mRNA_P-littoralis_Contig796.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig796.12.1
Unique NamemRNA_P-littoralis_Contig796.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig796.12.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.860e-63
Identity = 143/247 (57.89%), Postives = 168/247 (68.02%), Query Frame = 3 
Query:  117 QFWKPGETKPRGGGKDGDEP--------GDARSGGSGQRSGKGDSNSSRGSTGRKRDSSREDHAERRNGSSSGSAXXXXXKGKGKDAQQR-SRVGGIDAEVSRSASKPPVSGPSQGLLAMKFMQRKVKAEEAQKQQQDKREKLEREFSSSYAKRLKADK-SAKDR---LICQEDELDPALVLLGRRSFGGFNTVAEAAYNACVRDIAAGERLGQPQRRANGGGDGGGISDTEMAETFSKNVRRIGRR 818
            Q+WKPGE +P GGG+ G            D  S G G+   K   + SR      RD       ++ N  SS  A     KGKGK+     S +GGI  EVSR+ASKPPV+GPSQGLLAMKFMQRK +A+EAQKQ+Q+KREKLE +FSSSYAKRLKADK + KDR   LIC+ DE DPALV++GRRSFGGFN VAEAAY+AC+RDI AGERLG+P R  + GGDG  ISDTEMAE   KNVR  G+R
Sbjct:    2 QYWKPGEKRP-GGGEGGXXXXXXXXXXXSDRVSDGQGRTDSKKRVDKSR------RDEGGRGSTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVLICRRDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERLGRPGRGEDAGGDG--ISDTEMAERLGKNVRHAGQR 239
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BLAST of mRNA_P-littoralis_Contig796.12.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.250e-59
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = 3 
Query:  333 KGKGKDAQQRSR-VGGIDAEVSRSASKPPVSGPSQGLLAMKFMQRKVKAEEAQKQQQDKREKLEREFSSSYAKRLKADK-SAKDRLICQEDELDPALVLLGRRSFGGFNTVAEAAYNACVRDIAAGERLGQPQRRANGGGDGGGISDTEMAETF---SKNVRRIGR 815
            KGKGK+       +GGI  EVSR+ASKPPV+GPSQGLLAMKFMQRKV+A+EAQKQ+Q+KREKLE  FSSSYAKRLKADK + KDRLIC+ DE DPALV++GRRSFGGFN VAEAAY+AC+RDI AGER+G+P R  + GG  GGISDTEMAE F   SK+V   G+
Sbjct:   78 KGKGKERHSTGGGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTGKDRLICRHDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERIGRPGRGEDAGG--GGISDTEMAERFVGSSKSVLSRGK 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLI5_9PHAE2.860e-6357.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK6_ECTSI1.250e-5970.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:34310..38019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000025705
PFAMsMPP6
Model size1345
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000717
EggNOG OGs2DA8C@1|root,2S5F9@2759|Eukaryota,1MHB8@121069|Pythiales
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
DescriptionSource PGD
Cds size717
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.12.1prot_P-littoralis_Contig796.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig796 34414..37495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791626.265007-UTR-P-littoralis_Contig796:34309..344131680791626.265007-UTR-P-littoralis_Contig796:34309..34413Pylaiella littoralis U1_48UTRP-littoralis_Contig796 34310..34413 +
1680791626.3299694-UTR-P-littoralis_Contig796:37495..380191680791626.3299694-UTR-P-littoralis_Contig796:37495..38019Pylaiella littoralis U1_48UTRP-littoralis_Contig796 37496..38019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791626.2772353-CDS-P-littoralis_Contig796:34413..347611680791626.2772353-CDS-P-littoralis_Contig796:34413..34761Pylaiella littoralis U1_48CDSP-littoralis_Contig796 34414..34761 +
1680791626.2898579-CDS-P-littoralis_Contig796:36253..363811680791626.2898579-CDS-P-littoralis_Contig796:36253..36381Pylaiella littoralis U1_48CDSP-littoralis_Contig796 36254..36381 +
1680791626.3041544-CDS-P-littoralis_Contig796:36815..370191680791626.3041544-CDS-P-littoralis_Contig796:36815..37019Pylaiella littoralis U1_48CDSP-littoralis_Contig796 36816..37019 +
1680791626.3195133-CDS-P-littoralis_Contig796:37458..374951680791626.3195133-CDS-P-littoralis_Contig796:37458..37495Pylaiella littoralis U1_48CDSP-littoralis_Contig796 37459..37495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig796.12.1

>prot_P-littoralis_Contig796.12.1 ID=prot_P-littoralis_Contig796.12.1|Name=mRNA_P-littoralis_Contig796.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
MQATQFWKPGETKPRGGGKDGDEPGDARSGGSGQRSGKGDSNSSRGSTGR
KRDSSREDHAERRNGSSSGSAKKKERKGKGKDAQQRSRVGGIDAEVSRSA
SKPPVSGPSQGLLAMKFMQRKVKAEEAQKQQQDKREKLEREFSSSYAKRL
KADKSAKDRLICQEDELDPALVLLGRRSFGGFNTVAEAAYNACVRDIAAG
ERLGQPQRRANGGGDGGGISDTEMAETFSKNVRRIGRR*
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mRNA from alignment at P-littoralis_Contig796:34310..38019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig796.12.1 ID=mRNA_P-littoralis_Contig796.12.1|Name=mRNA_P-littoralis_Contig796.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3710bp|location=Sequence derived from alignment at P-littoralis_Contig796:34310..38019+ (Pylaiella littoralis U1_48)
CTCATCTGCTCGCACAGCATCCGAGCTCTAGCTACGTAGAACAGGACACC
CGCTTCACGGGAGTGTGGAAAAGCGCACCGCGAGAAACCGAGCGTGCGAA
GAACATGCAGGCAACACAATTCTGGAAACCCGGAGAGACGAAGCCACGAG
GTGGCGGTAAAGATGGCGACGAGCCAGGCGATGCACGGAGTGGTGGGTCA
GGACAAAGATCTGGCAAAGGGGACAGCAACAGCAGCAGAGGTAGCACGGG
GAGGAAGCGAGACAGCAGCCGGGAAGATCACGCCGAACGTCGCAACGGTA
GTAGCAGCGGGAGTGCCAAGAAGAAAGAGAGAAAGGGGAAAGGGAAGGAT
GCGCAACAAAGGAGCAGGGTCGGTGGCATCGACGCCGAGGTCTCACGATC
TGCCTCCAAGCCTCCAGTCTCTGGACCATCACAGGGCCTCTTGGCGATGA
AGGTATTAGAAGAGCACTGCTGCTGTGTACTTCGAAGTACAAATCATACA
TCGACTTCTCAATTATGTATGCTCCACACCGCTGTTGTATACCATGGAGG
AACTTCATTTGATCGAGAGAAGAGAGAGGCGTGCGGTTGGGATGAAGTAA
ATGCAGACCAGAGCCCAGCCAGGAATACGGGCGCCCCGACCGGGCTTTGT
TTCTTGATTTTCATGTTTTGCACTGTGTGTGTTGTCATCCCTTTCATTGG
ACGCCACTCTACACCTTTCGGGTAGGTAGACGCTCCAACCGTGGTCACAC
AGGGGGAAGTCAACACAGGAGTTTTTTTTTTTTTTTGCTCCACTTCCCTC
TCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAAGGGACAGCATTTCC
TTTCCCTCGTCGATGGTACGATCGAATTTTGTTTACTCACGAATTGATCG
CTTTCCACTTTCACGCTCAATGTGAGAAAAAGCCCCAGATCGTGTTACGG
CACTGGGATTCGAACTCACGCGTAAATGTCAGAAGGTGCACTATACATAT
GTAATCTGCTAGTACTCTTTTTAGGAGTAGACCTGCCAGCTACCTGCGCA
AAGGGCCACTACTGCTGTACTGCTGTAGCACTGCTGCTTTAGCCTTTCTG
CACGGACTTCAGGTTAAAGTTTGATAGCAGAGCTGTGAGACGCCTTGCCT
GCTACAGTACTGACTGCTGCATGCTTGAAGGGCAGCTGTGTTTTTTCACG
TAGGGTCATTGGAAACGGTATTGCTGTACAAGTAGATGCAACCGCCTCAA
AGTAGATGCAGCAACGTTTGCATATCGGTACGGTGTTACTTCGAAGTATA
TACGAACCTTTGTAAGATACAAGTACAATGTATGCATCCGTACTTTGCCT
GGAGCCGTACTGCCTGGGGCCGGGGCACCAGCAAGCAAGCATTTCAAAAC
TGCAAACTCGACACAATTACTACAGCAGTACTGCTGCTGTATGCACGACG
ACACACCAGTGATCTGATGTACTTCGTAATATCTTAGCGCAACCGGTATT
GCTGCCGCCCCACGGTTGTGCTAAATCCTCCCGCCAACGTGGCTTCAAGC
CCCGGCTAATACAGGCAGTGGGCAGAAAGCCCGCGGAGTACTGCGACAAC
GCTCGGCCTAGCGCCGCAAGGATCAATCCTTAATCGAGACATCGCCGAGA
AGAAACGCGCTACCTCCCTCTCTACGTATGCCCATCACCACCTAAATCCG
TGAACCTTCGGATGTGACAAAGAAGGGTACCGCAATATTGCCTTTCTACG
CACTGCTGTTTTTTGTCTCTCTTGCATATACCGGTGCCATGAATACACGT
CTGTCCTCGTTAGGGTACGTAACACCAAAGGAAGGCAGTATCTTGGGTCT
GGCGATTGACCAGCGCGTTGTTCTTGGCTGCGTCTCGTGGTCATCTCCGC
GGCGCGGCGCACGATTTGTACTTTGTTTTTTTCGTTTGTCGCAGTTCATG
CAGCGTAAGGTGAAGGCAGAAGAGGCTCAAAAACAGCAGCAGGACAAGAG
GGAGAAGCTGGAGAGAGAATTCAGCTCGTCTTACGCGAAACGGCTCAAGG
CCGACAAATCTGCAAAAGATCGGTGGGTGCGCATCAAGCAGCAGTGTAGT
GTGCTGGCCTTTCATGGTCGAGAAGCCACCGCGTGCGTCTAGGCAAAGGC
TACAGAATCCCCCGTCACAACCTCCAGACGACGCTCTGAGGCGGGGGGTT
GGTTAATACTTCACTTGCGGCTAGCGCCATCCACTGCAGAGGTTGGTTGG
CGTAAATGCTCTTGGGAGGTAAAAGCGCCGACTACTGCCGTACGGGTACA
AGCATGCGTGGGCGGTATCGCGACGGCCTTGAGACGTCGAGCTTCCCAGC
CGAAAGTATTGCTTCCGCTCAGATCTTTGAACTCTTTTCACGTGCGACTA
TTCTTCTGTCGGCACATACTTCTGATTCCTCGACCCTCCAACGTCTCTAA
CCCAACTAACCTCACTAAATCCCCCACCGACACGGACAACACTACCGACG
CACCAGGCTCATTTGTCAGGAAGACGAGCTAGACCCAGCGCTCGTTCTGC
TCGGAAGGAGGTCATTCGGGGGTTTCAACACAGTCGCCGAGGCGGCATAC
AACGCTTGCGTTAGAGATATAGCGGCTGGGGAGAGATTAGGGCAGCCGCA
GAGGAGGGCGAATGGAGGGGGTGATGGTGGTGGGATATCGGACACGGAAA
TGGCTGAAACGTGAGTTTCGCTTGGTTGGAATGAGAACGGGTCGAATTGC
TTGGGGAAGCGCGCACGTACACATTGTTGTACAGGTGTCGTCTGCACGTT
TGAGAGTATCAGGGATCAGTCTAAACTTCGACCGGTATCCATGTTTTACC
GCTCCCCGTGCGGCGTACTTCGTGTACGTCTTTGCGTTGAGGCAGTTGTT
TCTACTGTACGCAGTTGACAAATGCTTTCATCTTGGGTTACACCAATATA
TTCCACCACAATATGATATCGCCAATTATACGCTCGTCTAGTGGTTGCAG
TACCCGTATATGGACGGTCGTGGTGTCCACGGAATAGGTCTGTGAGCGCA
CGTGCGTAGTTGTGCCTGTGCTCATCCCCTTCCCAAGCGCTCCCTCTCTA
GAGAGCTCTGACTCGCTGTCTCTCGCTTTTTTTTCTGTTCACCCGGCAGG
TTTTCGAAAAACGTGCGCCGTATTGGTCGAAGATGACCCGACCGAAAACT
TATCCTTCCATCAGTTCACCTTTTGTCCTTCCCCCGCAGCAGGCAGCAGT
ATCGGTTGTGTGGGCGAAACAACATGTGTTTGGGGCATTTGATACTTGGT
CTTAGCAGAAGGCACCTGCAATGATTGACTGCCTTGACGGTACGGCGCTT
TTTGTTCCACGAGTTGTCGGTGGATTGGGTTTTGGTTTGTGGCACTTGCC
GGATAGAGCTATCATTCGTTTGGGAGCGCTTTATTTGCCCTCAAATCCGA
GGAGCAGTCGGACGCTCGGTTGGTTTCTATTAATAGGTGTTTAATTGTCC
TTGCTTGCCGCTTGTGCTGCTGCGGCTGCTGCTGCCGCCGGCGCCAAAAA
TTGGGTGCGCAACGTTGGCTTTCAAGATTGGGTCAGCACTTTTTGACCGT
TGCATGAAGTTTGCCATTTTCGGGGACATAATGAGCCATCCTCGTCGACG
TCGATGCCAACATCAAGGCCGCAACATCACCACATATATATGTACCGCGC
CAGGATCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig796:34310..38019+

>mRNA_P-littoralis_Contig796.12.1 ID=mRNA_P-littoralis_Contig796.12.1|Name=mRNA_P-littoralis_Contig796.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig796:34310..38019+ (Pylaiella littoralis U1_48)
ATGCAGGCAACACAATTCTGGAAACCCGGAGAGACGAAGCCACGAGGTGG
CGGTAAAGATGGCGACGAGCCAGGCGATGCACGGAGTGGTGGGTCAGGAC
AAAGATCTGGCAAAGGGGACAGCAACAGCAGCAGAGGTAGCACGGGGAGG
AAGCGAGACAGCAGCCGGGAAGATCACGCCGAACGTCGCAACGGTAGTAG
CAGCGGGAGTGCCAAGAAGAAAGAGAGAAAGGGGAAAGGGAAGGATGCGC
AACAAAGGAGCAGGGTCGGTGGCATCGACGCCGAGGTCTCACGATCTGCC
TCCAAGCCTCCAGTCTCTGGACCATCACAGGGCCTCTTGGCGATGAAGTT
CATGCAGCGTAAGGTGAAGGCAGAAGAGGCTCAAAAACAGCAGCAGGACA
AGAGGGAGAAGCTGGAGAGAGAATTCAGCTCGTCTTACGCGAAACGGCTC
AAGGCCGACAAATCTGCAAAAGATCGGCTCATTTGTCAGGAAGACGAGCT
AGACCCAGCGCTCGTTCTGCTCGGAAGGAGGTCATTCGGGGGTTTCAACA
CAGTCGCCGAGGCGGCATACAACGCTTGCGTTAGAGATATAGCGGCTGGG
GAGAGATTAGGGCAGCCGCAGAGGAGGGCGAATGGAGGGGGTGATGGTGG
TGGGATATCGGACACGGAAATGGCTGAAACGTTTTCGAAAAACGTGCGCC
GTATTGGTCGAAGATGA
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