mRNA_P-littoralis_Contig796.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig796.1.1
Unique NamemRNA_P-littoralis_Contig796.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A4ARJ5_MARSH (Multifunctional fusion protein n=10 Tax=Maribacter TaxID=252356 RepID=A4ARJ5_MARSH)

HSP 1 Score: 132 bits (331), Expect = 2.620e-33
Identity = 65/82 (79.27%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:  173 TNWKKEIDGDQNRPKTADH*KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            TNWKK +   +   K     KEVTLTGVGLHTGENV LKF PA ENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG
Sbjct:    2 TNWKKRLTVIKTTDKQRTIAKEVTLTGVGLHTGENVILKFAPAPENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 83
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A0A3B0C8M6_9FLAO (Multifunctional fusion protein n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3B0C8M6_9FLAO)

HSP 1 Score: 129 bits (323), Expect = 3.460e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG
Sbjct:   15 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 76
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: E6XFD6_CELAD (Multifunctional fusion protein n=12 Tax=Cellulophaga TaxID=104264 RepID=E6XFD6_CELAD)

HSP 1 Score: 120 bits (302), Expect = 3.190e-29
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEVTLTGVGLHTGENVT+K +PA ENHGYAFKR DLEGEPIIEADANYV+NTQRGTNLEKRG
Sbjct:   10 KEVTLTGVGLHTGENVTMKLVPAPENHGYAFKRTDLEGEPIIEADANYVINTQRGTNLEKRG 71
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A0A0S1S9R0_9FLAO (Multifunctional fusion protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A0S1S9R0_9FLAO)

HSP 1 Score: 120 bits (301), Expect = 4.570e-29
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KE+TL+GVGLHTGENVT+KF+PA ENHGYAFKRVD+EGEPIIEADANYVVNTQRGTNLEK G
Sbjct:   13 KEITLSGVGLHTGENVTMKFVPAPENHGYAFKRVDIEGEPIIEADANYVVNTQRGTNLEKNG 74
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: UPI00047C2434 (bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase n=1 Tax=Maribacter antarcticus TaxID=505250 RepID=UPI00047C2434)

HSP 1 Score: 120 bits (300), Expect = 6.330e-29
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRGSR 424
            K V+LTGVGLHTG NVTLKFLPA ENHGYAFKR+DLEG+PIIEADANYV+NTQRGTNLEKRG R
Sbjct:   13 KAVSLTGVGLHTGANVTLKFLPAGENHGYAFKRIDLEGQPIIEADANYVINTQRGTNLEKRGVR 76
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A0A221V3G5_9FLAO (Multifunctional fusion protein n=18 Tax=Arenibacter TaxID=178469 RepID=A0A221V3G5_9FLAO)

HSP 1 Score: 119 bits (299), Expect = 8.790e-29
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KE+TL GVGLHTGENVTLKF+PA EN GYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG
Sbjct:   13 KEITLKGVGLHTGENVTLKFVPAPENFGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 74
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A0A1G9IY55_9FLAO (Multifunctional fusion protein n=8 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1G9IY55_9FLAO)

HSP 1 Score: 119 bits (298), Expect = 1.230e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEVTL GVGLHTG NVTLKF+PAAEN GYAFKRVDLEGEP+IEADANYVVNTQRGTNLEKRG
Sbjct:   14 KEVTLKGVGLHTGANVTLKFVPAAENFGYAFKRVDLEGEPVIEADANYVVNTQRGTNLEKRG 75
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BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: UPI000420D5DE (3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI000420D5DE)

HSP 1 Score: 119 bits (297), Expect = 1.720e-28
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEVTL GVGLHTGENVTLKF+PA EN+GYAFKRVDLEGEP+IEADAN+VVNTQRGTNLEKRG
Sbjct:   15 KEVTLEGVGLHTGENVTLKFVPAPENYGYAFKRVDLEGEPLIEADANFVVNTQRGTNLEKRG 76
[Close]
BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: I3C9E3_9FLAO (Multifunctional fusion protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=I3C9E3_9FLAO)

HSP 1 Score: 118 bits (296), Expect = 2.370e-28
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEV+LTGVGLHTGENVT+ F PA ENHGYAFKRVDLEG+P+IEADANYVVNTQRGTNLEKRG
Sbjct:   13 KEVSLTGVGLHTGENVTMTFKPAPENHGYAFKRVDLEGQPVIEADANYVVNTQRGTNLEKRG 74
[Close]
BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Match: A0A5S3PWQ7_9FLAO (Multifunctional fusion protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PWQ7_9FLAO)

HSP 1 Score: 118 bits (296), Expect = 2.440e-28
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 2 
Query:  233 KEVTLTGVGLHTGENVTLKFLPAAENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKRG 418
            KEV L GVGLHTGENVT+KF+PA ENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEK G
Sbjct:   15 KEVILKGVGLHTGENVTMKFVPAPENHGYAFKRVDLEGEPIIEADANYVVNTQRGTNLEKHG 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A4ARJ5_MARSH2.620e-3379.27Multifunctional fusion protein n=10 Tax=Maribacter... [more]
A0A3B0C8M6_9FLAO3.460e-32100.00Multifunctional fusion protein n=4 Tax=Flavobacter... [more]
E6XFD6_CELAD3.190e-2990.32Multifunctional fusion protein n=12 Tax=Cellulopha... [more]
A0A0S1S9R0_9FLAO4.570e-2988.71Multifunctional fusion protein n=3 Tax=Flavobacter... [more]
UPI00047C24346.330e-2987.50bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetyl... [more]
A0A221V3G5_9FLAO8.790e-2991.94Multifunctional fusion protein n=18 Tax=Arenibacte... [more]
A0A1G9IY55_9FLAO1.230e-2891.94Multifunctional fusion protein n=8 Tax=Flavobacter... [more]
UPI000420D5DE1.720e-2890.323-hydroxyacyl-[acyl-carrier-protein] dehydratase F... [more]
I3C9E3_9FLAO2.370e-2888.71Multifunctional fusion protein n=3 Tax=Flavobacter... [more]
A0A5S3PWQ7_9FLAO2.440e-2890.32Multifunctional fusion protein n=1 Tax=Maribacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:1..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121875.KB907548_gene1598
Preferred namelpxD
PFAMsHexapep,Hexapep_2,LpxD
Model size498
Max annot lvl976|Bacteroidetes
KEGG rclassRC00039,RC00166
KEGG koko:K02536
KEGG ReactionR04550
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.16e-24
EggNOG OGsCOG1044@1|root,COG1044@2|Bacteria,4NE5G@976|Bacteroidetes,1HWJD@117743|Flavobacteriia
EC2.3.1.191
DescriptionCatalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Cds size195
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.8754113-UTR-P-littoralis_Contig796:0..3031680791625.8754113-UTR-P-littoralis_Contig796:0..303Pylaiella littoralis U1_48UTRP-littoralis_Contig796 1..303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.8917067-CDS-P-littoralis_Contig796:303..4981680791625.8917067-CDS-P-littoralis_Contig796:303..498Pylaiella littoralis U1_48CDSP-littoralis_Contig796 304..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.1.1prot_P-littoralis_Contig796.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig796 304..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig796.1.1

>prot_P-littoralis_Contig796.1.1 ID=prot_P-littoralis_Contig796.1.1|Name=mRNA_P-littoralis_Contig796.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
IVGHITIGDNVKIQAQSGIGRNVKDNEVLQGSPALNYGDYNKSYVHFKNL
PRIVNRIDQLEKRD*
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mRNA from alignment at P-littoralis_Contig796:1..498-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig796.1.1 ID=mRNA_P-littoralis_Contig796.1.1|Name=mRNA_P-littoralis_Contig796.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig796:1..498- (Pylaiella littoralis U1_48)
ATTGTAGGGCATATCACCATCGGAGATAATGTAAAGATACAAGCGCAGTC
CGGGATTGGGAGAAACGTAAAGGACAACGAAGTATTACAAGGTTCTCCCG
CTTTGAATTATGGGGATTACAACAAATCCTACGTACACTTTAAAAATTTG
CCTAGAATAGTAAATAGAATCGACCAATTGGAAAAAAGAGATTGACGGTG
ATCAAAATAGACCAAAAACAGCGGACCATTAAAAGGAGGTAACCCTTACA
GGCGTGGGGCTACATACCGGTGAGAATGTTACACTCAAGTTCTTGCCTGC
CGCGGAAAATCATGGATATGCATTTAAACGCGTTGACCTTGAGGGCGAAC
CAATTATTGAGGCTGATGCAAACTATGTCGTAAATACCCAAAGGGGCACC
AATCTGGAAAAACGAGGGTCAAGATCAAGACTTCGGAACATGTCCTTGCA
GCACTTGTGGGGATGGAGATCGATAATGTTTTGATCGAACTGGATTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig796:1..498-

>mRNA_P-littoralis_Contig796.1.1 ID=mRNA_P-littoralis_Contig796.1.1|Name=mRNA_P-littoralis_Contig796.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig796:1..498- (Pylaiella littoralis U1_48)
ATTGTAGGGCATATCACCATCGGAGATAATGTAAAGATACAAGCGCAGTC
CGGGATTGGGAGAAACGTAAAGGACAACGAAGTATTACAAGGTTCTCCCG
CTTTGAATTATGGGGATTACAACAAATCCTACGTACACTTTAAAAATTTG
CCTAGAATAGTAAATAGAATCGACCAATTGGAAAAAAGAGATTGA
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