mRNA_P-littoralis_Contig12.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.58.1
Unique NamemRNA_P-littoralis_Contig12.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:266822..267220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.7185106-UTR-P-littoralis_Contig12:266821..2668221680789504.7185106-UTR-P-littoralis_Contig12:266821..266822Pylaiella littoralis U1_48UTRP-littoralis_Contig12 266822..266822 +
1680789504.7354677-UTR-P-littoralis_Contig12:267149..2672201680789504.7354677-UTR-P-littoralis_Contig12:267149..267220Pylaiella littoralis U1_48UTRP-littoralis_Contig12 267150..267220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.7276027-CDS-P-littoralis_Contig12:266822..2671491680789504.7276027-CDS-P-littoralis_Contig12:266822..267149Pylaiella littoralis U1_48CDSP-littoralis_Contig12 266823..267149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.58.1prot_P-littoralis_Contig12.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 266823..267149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.58.1

>prot_P-littoralis_Contig12.58.1 ID=prot_P-littoralis_Contig12.58.1|Name=mRNA_P-littoralis_Contig12.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MECGFCLAGVIEERGGEARASWVASFFGGCHHLYECRCVPQVCIEVFCVY
IRYSCFSFVLWMECFGVCFPFYCKEAFFFSEGAECSKTFKNMCCLLTHRA
KRPGHTFS*
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mRNA from alignment at P-littoralis_Contig12:266822..267220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.58.1 ID=mRNA_P-littoralis_Contig12.58.1|Name=mRNA_P-littoralis_Contig12.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig12:266822..267220+ (Pylaiella littoralis U1_48)
AATGGAGTGTGGCTTTTGTTTGGCAGGAGTTATCGAGGAGCGGGGGGGGG
AGGCACGAGCATCGTGGGTGGCTTCTTTTTTTGGTGGATGCCATCATTTA
TATGAGTGTCGTTGTGTGCCACAGGTATGTATAGAAGTATTTTGCGTATA
CATTCGATACTCTTGTTTTTCCTTTGTACTCTGGATGGAGTGTTTCGGGG
TTTGTTTTCCCTTTTATTGCAAAGAGGCGTTCTTTTTCAGCGAGGGGGCG
GAATGTAGCAAAACCTTCAAGAATATGTGTTGTCTTCTCACACATAGAGC
CAAAAGACCAGGGCACACGTTTTCTTAACGCGCTCGTTTGCTCTCGTGCC
GGGGCGGGGGGGGGTGAATGTTTATATCCAGCAGGAGCTCGCGTTTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:266822..267220+

>mRNA_P-littoralis_Contig12.58.1 ID=mRNA_P-littoralis_Contig12.58.1|Name=mRNA_P-littoralis_Contig12.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig12:266822..267220+ (Pylaiella littoralis U1_48)
ATGGAGTGTGGCTTTTGTTTGGCAGGAGTTATCGAGGAGCGGGGGGGGGA
GGCACGAGCATCGTGGGTGGCTTCTTTTTTTGGTGGATGCCATCATTTAT
ATGAGTGTCGTTGTGTGCCACAGGTATGTATAGAAGTATTTTGCGTATAC
ATTCGATACTCTTGTTTTTCCTTTGTACTCTGGATGGAGTGTTTCGGGGT
TTGTTTTCCCTTTTATTGCAAAGAGGCGTTCTTTTTCAGCGAGGGGGCGG
AATGTAGCAAAACCTTCAAGAATATGTGTTGTCTTCTCACACATAGAGCC
AAAAGACCAGGGCACACGTTTTCTTAA
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