mRNA_P-littoralis_Contig796.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig796.43.1
Unique NamemRNA_P-littoralis_Contig796.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:125170..126342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791625.8251822-CDS-P-littoralis_Contig796:125170..1252501680791625.8251822-CDS-P-littoralis_Contig796:125170..125250Pylaiella littoralis U1_48CDSP-littoralis_Contig796 125171..125250 -
1680791625.84266-CDS-P-littoralis_Contig796:126260..1263421680791625.84266-CDS-P-littoralis_Contig796:126260..126342Pylaiella littoralis U1_48CDSP-littoralis_Contig796 126261..126342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.43.1prot_P-littoralis_Contig796.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig796 125171..126342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig796.43.1

>prot_P-littoralis_Contig796.43.1 ID=prot_P-littoralis_Contig796.43.1|Name=mRNA_P-littoralis_Contig796.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
DILRVATHFEFCGNTQYRLRTRNRRAPGCRRCFRRRRRMREGRGHDRTPR
PPRV
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mRNA from alignment at P-littoralis_Contig796:125170..126342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig796.43.1 ID=mRNA_P-littoralis_Contig796.43.1|Name=mRNA_P-littoralis_Contig796.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1173bp|location=Sequence derived from alignment at P-littoralis_Contig796:125170..126342- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGTTTGAACTTAAATTTTA
CGTTCCGCCGACGCACACCGGCTCTCTTCATCTTCCGCGCCAAAAAGAAA
AACAGATGTACTTCGTGTGTCGCTAGACTGATTAGGTTTTTCCGCGGGCG
CGCGAATCCACGGCCCCCGCGAATCTGCTGGGCCCCTCCTATTTTTTCGC
CGGTGCGCAGCACTGTTCCTCGCAAGCCGTTTCACCAATGTCAGCTGACT
GCGGTTCAGGCTTCCGGGCAATTTCGAATGGGTGTAGACTAGTCTTACAC
GTGACAAATTCTTCGTCCTGCCTGAACCCTTCCTCACTGCCGCGAACATC
GATTGACTTATGCGCACACACTCTTATCATTCGAAGATAACAATATGCGG
ACCATGACCATTGCTCCCATTCCCTGTCCTCCACAGCAGTACTTCCTCAA
AGAGGCAGCGTCCCACAAGAGGAAATGACGTAGAATACCACCCCTCTTGC
GCAAATATGAATCTACCGTGCTCGATGTTTCGCGCGCTAGTGGTTTCATA
CTTTCCACCACTATTAATAGCTGTTAATTTGCTTGCATGATTTGCACCCT
TGTTTTGGCGAGCGTTAAAGGCTGTATTTCAGCTGTTGTTTTTGTCTCAT
TGAAAACCGTTCCGTTCTCTCTATCCAGTACCTCCAGCTGTCCGTGCTCT
TCCAACACTTGCGTCGGGCGATTCCCGTGGTCACAAGCTAACTACCCTAA
GAAAAGGTATTCTAAAATATAACACAATAAAAAATGGACCACGGAGCCGA
AAGATCAGCAAAGCAGTAGAAAGAAGCAGCAGAAGCATATTTAAAATATA
ACTCAACGCATGCCGTGCTCAAGAGGCGGGGAATGGACGGGGAGTTTGTG
CATCTTAGGCGATAGGTGTCTCAATGGCAATCAGGTATAACCTCTTGTCG
CGTGAACACATGTGCATGCCTATTCATAAAAGCCGATGAATTTCGAATAG
TTCCCATTTTTATTTCGTTCACACCGCAACGGCTACCGACAGGCTGCCGT
CGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCG
CACACCACGCCCACCACGAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig796:125170..126342-

>mRNA_P-littoralis_Contig796.43.1 ID=mRNA_P-littoralis_Contig796.43.1|Name=mRNA_P-littoralis_Contig796.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig796:125170..126342- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGCTGCCGTCGATGCTTTC
GACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCACACCACGC
CCACCACGAGTG
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