mRNA_P-littoralis_Contig795.31.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig795.31.3
Unique NamemRNA_P-littoralis_Contig795.31.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig795.31.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig795contigP-littoralis_Contig795:96915..99338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size990
Hectar predicted targeting categoryother localisation
Exons2
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791624.9027693-UTR-P-littoralis_Contig795:96914..970931680791624.9027693-UTR-P-littoralis_Contig795:96914..97093Pylaiella littoralis U1_48UTRP-littoralis_Contig795 96915..97093 -
1680791624.9424384-UTR-P-littoralis_Contig795:99070..993381680791624.9424384-UTR-P-littoralis_Contig795:99070..99338Pylaiella littoralis U1_48UTRP-littoralis_Contig795 99071..99338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791624.9196155-CDS-P-littoralis_Contig795:97093..973861680791624.9196155-CDS-P-littoralis_Contig795:97093..97386Pylaiella littoralis U1_48CDSP-littoralis_Contig795 97094..97386 -
1680791624.9312031-CDS-P-littoralis_Contig795:98820..990701680791624.9312031-CDS-P-littoralis_Contig795:98820..99070Pylaiella littoralis U1_48CDSP-littoralis_Contig795 98821..99070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig795.31.3prot_P-littoralis_Contig795.31.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig795 97094..99070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig795.31.3

>prot_P-littoralis_Contig795.31.3 ID=prot_P-littoralis_Contig795.31.3|Name=mRNA_P-littoralis_Contig795.31.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
MDSAQNKFTAVAAGTRASSSKHPACVKEQTPCTVRPHSVCFKVETDGRRT
QRGDSPQMAALAALPLPPPKTPEAKGQFIVVKSEVQTRHDVFSRHISRSG
TVVESTRMTRFSRTPLLSRHLPSPLPMPYRPASGADQIGGATTTLLRLPL
RLPLPMPLLLPLAGSSPFPFLMPLLCSPTL*
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mRNA from alignment at P-littoralis_Contig795:96915..99338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig795.31.3 ID=mRNA_P-littoralis_Contig795.31.3|Name=mRNA_P-littoralis_Contig795.31.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2424bp|location=Sequence derived from alignment at P-littoralis_Contig795:96915..99338- (Pylaiella littoralis U1_48)
CAAGGCGAGGGTGAGGACCAGTGCGCCAGCAGCGGCAGGAAGCGGCGCCA
GGACGAAGATGAAGGCGCGAGCAGCGACGAAGAGGTACGTTCGACCAGCA
TTTCGTGTGCACAGATGAAGAAAAGCATCACTCGCTCACGGGGAGTTGAC
CTTTGAACCACTCTCTGTTGTCGAGTAATCTAGGCTAGACTAGGCTAGGC
TAGGCTGCAACGCTTATTTATCGCCATCACATTACCGTGGTCACATTGGA
GTATTTCGAGTGGCGTGCATGGATAGCGCGCAAAACAAATTTACAGCAGT
AGCGGCAGGGACTCGAGCAAGCTCTAGCAAGCACCCCGCATGCGTGAAGG
AACAAACACCCTGCACCGTCCGTCCCCACTCTGTTTGTTTCAAAGTGGAG
ACGGACGGACGCCGAACGCAGAGGGGTGACTCGCCGCAGATGGCGGCGCT
GGCGGCGCTCCCACTCCCGCCACCCAAGACCCCCGAGGCCAAAGGGCAGT
TCATTGTCGTCAAATCAGGTGGGTGGCGGGCGCGCTCGAGAAGGCTGCCG
CCTCCGAGCTCGTGCGCGTCCTCGACGGTGAGCTTACGGCTGCTGCCGCT
GCCGCGGACGTCCGTCGCCTCTTTAGTATCAGACTCGGAGCTGCCACCGC
TGTCATCTCTCACCGAGCTCAGGGTTCCTACGAGGGGGGGCGCTTCTTGC
TTGCAGTGAGCTACTATGCGGCAGTTGTCGTTGTCGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTTTTGTTGTTGTCGACTCTCACATTTTAGCTCA
CTCCACCAACGTCTAGCCCGTGGTCACAAACCAGACACACATCGTGCTAG
GAGGAAAACCATAACAACGGAAATAAACTATGGTCACCAAGACTGCATCA
GAGATGTAGCATCGTTGGGGTACCTTCTGTAATGGCCAAAGAGTACAAAA
ATACAGAAACGTAGGCTCGAAAAACAAAACTTGGAAACTTGGAAACAAAC
GGAACCAAGACAAACCATAAAAACCAACCAGAGCACAGAACCAATACGAA
CCAAAGCAAAACGAGAGCTCAAGAGCCCAGCAAAGGTTATTGCGGTCTCA
ATGAGAACAAAATAAAAATAACAAAGAGGGCGAGCAAAGAGCTAGAAAGA
AAAGACGACAATATGAATGCCGAGAGAGATAGGGGGGGGTACAACGAGTG
AGGGAGGGTAAACAGAGAGGAAGCAGGAAAAAAAAAGAAGTGAGAAAAAA
CGACACCGAGAGCAGAGCGAGCAAGGAAAAACGGAAAGAAAGAGGTTCTC
ACCGATGTGGAGGCCCGGTTGGTTGATTTCCCTGATGTCCCAGTGGCCCT
CTTTGGCCAAAGAAGGGTATCATCCGCGTAAGCAAGGCTTCGTACCCTTC
CAGACATGTGGACTTGAGCCACTATTTTCTATCATGAAGTGTTTTGGATA
TGCGAAACACGTCATAACAGAAAGTCATGGCACAGGTCCGCATGTCTCTG
GAGGGATACCGAGCCCGACCCACGCGGATACCCTCCTTTGGCCCCAAGGG
CCAGGACGACGTCAGTGAAATCCATCGATGGTCCCGGGCTTCCACGTCGG
TGAGAACCCCCCCGAACCTCGCGGTACCCCACGATGCACACAGTGTGTAG
ATAGAGGTCAAGCACTTTTTTCACGAGAAGTACCTATTGGTCGTTGTAGG
ATACAGCTGTATGTGGGTGGTGCAGGCCACCTCTGTTGATACGTTTGTTT
GTAGACGTTCACGTGTGCACCGGCCACATCACCCCCCGCGTCCGACGCTA
ACGAAACACACAACAACATCCGATGCGCGCATGAAGAGAACCAGTGATAA
TCCCCGTTGCACCTCCCACTACCCCCTCCCCTATCCCCTACCCCCTCCCC
CTGCCCCTAATATTCCATCCCCACGCCCGTCCGTCCCCACTCTCTAAAAC
AGAGGTGCAAACCCGGCATGATGTCTTCAGCAGGCACATCAGTCGATCAG
GAACTGTCGTGGAGTCTACACGTATGACGAGATTTTCGCGTACGCCTCTT
CTCTCTCGGCACCTACCCTCGCCCTTGCCGATGCCGTATCGCCCGGCGTC
CGGAGCCGACCAAATTGGTGGTGCCACGACAACGCTGCTTCGGCTCCCGC
TACGGCTGCCGCTTCCGATGCCGCTGCTGCTTCCTCTCGCGGGATCCTCT
CCCTTTCCCTTCCTCATGCCGCTGCTCTGCAGTCCGACACTTTGAGCCGA
CGACACCGGCGTTCCGACAAGCCACCCGCGATGCCACCGCCGCTCCACCG
CCTGCAGGCCACCTGCCCTAGCTCTGCAGCGTATCCAGAGCTGCCGCGGC
CGAGCTATAGGCTGCTGCCGCCGCCTCCGAGGACGCCTGCCGCCGCCAGT
TTTCGCTTAATTCTTCCTATCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig795:96915..99338-

>mRNA_P-littoralis_Contig795.31.3 ID=mRNA_P-littoralis_Contig795.31.3|Name=mRNA_P-littoralis_Contig795.31.3|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig795:96915..99338- (Pylaiella littoralis U1_48)
ATGGATAGCGCGCAAAACAAATTTACAGCAGTAGCGGCAGGGACTCGAGC
AAGCTCTAGCAAGCACCCCGCATGCGTGAAGGAACAAACACCCTGCACCG
TCCGTCCCCACTCTGTTTGTTTCAAAGTGGAGACGGACGGACGCCGAACG
CAGAGGGGTGACTCGCCGCAGATGGCGGCGCTGGCGGCGCTCCCACTCCC
GCCACCCAAGACCCCCGAGGCCAAAGGGCAGTTCATTGTCGTCAAATCAG
AGGTGCAAACCCGGCATGATGTCTTCAGCAGGCACATCAGTCGATCAGGA
ACTGTCGTGGAGTCTACACGTATGACGAGATTTTCGCGTACGCCTCTTCT
CTCTCGGCACCTACCCTCGCCCTTGCCGATGCCGTATCGCCCGGCGTCCG
GAGCCGACCAAATTGGTGGTGCCACGACAACGCTGCTTCGGCTCCCGCTA
CGGCTGCCGCTTCCGATGCCGCTGCTGCTTCCTCTCGCGGGATCCTCTCC
CTTTCCCTTCCTCATGCCGCTGCTCTGCAGTCCGACACTTTGA
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