mRNA_P-littoralis_Contig792.10.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig792.10.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE) HSP 1 Score: 344 bits (883), Expect = 1.110e-108 Identity = 269/534 (50.37%), Postives = 326/534 (61.05%), Query Frame = 1
Query: 1 TQAFQSAFLASGASMMHRSPSFSSTLAPAA-VTMDCTPWGMEGYAVHPFDAGGGLQR--------------RXXXXXPRRDTRSGPMILAPANLLQGPHAQLQRQPQRQHLEISDPTVAKDTDDLYALTFDLPADVDHDGLEVVVTGRLLTVKARITREEDSGPSASRGGWVMRSSRTDSVSRSFVLPEGISTSTATASLSANSRAEVSFFSKGKAAGDEGTPDSSSPTATAAPSTTDSAAPVEKATTDAYTSSADYLASLFRVKPLEATDAADAAAADGESTTTDGDAPAAAVGAPTADAAAAERPR-TRPESPFEALDQEFRELAKAMWGEEVVENLRAPTQEELAEKAAAAKEAWAKREAXXXXXXXXXXXXXAKRLAAMRRATMAADVSLAGDGTAYLVKVALPEGSTRDKVKLTANPDKSLRVTVSDGSTTAAVDGGGRSLYKDVRLPKDALLSEISAKFETEQEHNEGQSANSRIKEEGRDGVEGAATTAAADEVDATKTRIGGASVSGLEVAVGRAVPPQSKRIDIM 1554
+QAF S FL+ MHRS S SST P VTMDC PW +E Y VHPF + G R R R GPMI AP+ QHL++ DP V +T+DLY L FDLPA VDHDGLEV V+ RLLTVKA ITRE+++ P +RGGWV RSSR DSVSRSFVLPEG+ S+ATASLS +AEV F +K K+ E ++ P PSTT +AA TT A TSSAD R P ++T + A P A P AA+ PR +RP PFEA+DQEFRE AKAMWGE V+E L+ PTQEELAE+AA A+EAW KR XXXXXXXXXXXXX KR+ AMRRATMAA++SL+ +G++Y+V+ ALPEG+TR+ VKLT NP S+RV VS ST AA G R +YKDV LPKDA+LSEISAKFE EQ H +G+ I+EEG + G ATK +V+G+EV VG+A PPQ K ++I+
Sbjct: 18 SQAFTSTFLSPSKLAMHRSTSPSSTAVPTTTVTMDCGPWDLECYGVHPFGSERGRGRGVRXXXXXXXXXXXRRNRGIQRYRPSFGPMIFAPSE-----------GQANQHLQVGDPAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLS-EGKAEVRF-NKDKSVRGEAASTAAPPIT---PSTTGTAASAGD-TTAAPTSSAD----AGRTPPTDSTGSTAVAEXXXXXXXXXXXXPVDAASTP----AASTEPRPSRPTFPFEAVDQEFREFAKAMWGEHVLERLQVPTQEELAEQAAMAREAWTKRXXXXXXXXXXXXXXXXKRVLAMRRATMAANISLSEEGSSYVVRFALPEGTTREDVKLTVNPSNSIRVAVSARSTAAA--GPDRPVYKDVVLPKDAILSEISAKFEAEQ-HRDGKGT---IEEEGEEATAGGG--------GATKE----GAVAGVEVTVGKASPPQPKHVEIL 508
BLAST of mRNA_P-littoralis_Contig792.10.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI) HSP 1 Score: 330 bits (847), Expect = 2.840e-103 Identity = 270/563 (47.96%), Postives = 326/563 (57.90%), Query Frame = 1
Query: 1 TQAFQSAFLASGASMMHRSPSFSSTLAPAA-VTMDCTPWGMEGYAVHPFDAGGGLQRRXXXXXPRRDTRS----------GPMILAPANLLQGPHAQLQRQPQRQHLEISDPTVAKDTDDLYALTFDLPADVDHDGLEVVVTGRLLTVKARITREEDSGPSASRGGWVMRSSRTDSVSRSFVLPEGISTSTATASLSANSRAEVSFFSKGKAAGDEGTPDSSSPTATAAPSTTDSAAPVEKATTDAYTSSADYLASLFRVKPLEATDAADAAAADGESTTTDGDAPAAAVGAPTADAAAAE----------------------------RPR-TRPESPFEALDQEFRELAKAMWGEEVVENLRAPTQEELAEKAAAAKEAWAKREAXXXXXXXXXXXXXAKRLAAMRRATMAADVSLAGDGTAYLVKVALPEGSTRDKVKLTANPDKSLRVTVSDGSTTAAVDGGG-----RSLYKDVRLPKDALLSEISAKFETEQEHNEGQSANSRIKEEGRDGVEGAATTAAADEVDATKTRIGGASVSGLEVAVGRAVPPQSKRIDIM 1554
+QAF S+F + MHRSPS SST P VTMDC+PW +E Y V PF G R XXXX R GPMI AP+ + QP QHL + DP + +TDDLYAL FDLPA VDHDGL+V V+ RLLTVKA ITRE+++ P +RGGWV RSSR DSVSRSFVLPEG+ S+ATASL A S+AEV F G+ + TAAP PV +TT S+ D T AA A++AD T P D+ + PR +RP SPFEA+DQEFRE AKAMWGE+V+E L+ PTQEELAE+AA A+EAWAKREAXXXXXXXXXXXXX R+ AMRRATMAAD+SL+ DG++Y+V+ ALPEG+TR+ VKLT NP KS+RV VS S RS+YKDV LPKDA+LSEISAKFE EQ +E +A EEG + A A ATK +V+G+EV VG+A PPQ K ++I+
Sbjct: 18 SQAFTSSFFSPSKLAMHRSPSSSSTAVPTTTVTMDCSPWDLECYGVDPFGRERGRGRGGXXXXXXXXXRKRGMQRYRPSFGPMIFAPS----------EGQP-NQHLRVGDPVIILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTRGGWVTRSSRVDSVSRSFVLPEGLVESSATASL-AESKAEVRFNKDKSVRGEAAS--------TAAP-------PVTPSTTGTVASAGD-------------TTAAPASSADAGRT-------------PLTDSTGSXPXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRPSRPASPFEAVDQEFREFAKAMWGEDVLERLQVPTQEELAEQAAMAREAWAKREAXXXXXXXXXXXXXXXRVLAMRRATMAADISLSEDGSSYVVRFALPEGTTREDVKLTVNPSKSIRVAVSATSXXXXXXXXXXXXPDRSVYKDVALPKDAILSEISAKFEAEQHPDEKGNA-----EEGGE-------KATAGGGGATKE----GAVAGVEVTVGKASPPQPKNVEIL 511
BLAST of mRNA_P-littoralis_Contig792.10.1 vs. uniprot
Match: D7FTP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP7_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.540e-17 Identity = 121/376 (32.18%), Postives = 171/376 (45.48%), Query Frame = 1
Query: 292 ISDPTVAKDTDDLYALTFDLPADVDHDGLEVVVTGRLLTVKARITREE---------DSGPSASRGGWVMR--SSRTDSVSRSFVLPEGISTSTATASLSANSRA-----EVSFFSKGKAAGDEGTPDSSSPTATAAPSTTDSAAPVEKATTD-----AYTSSADYLASLFRVKPLEATDAADAAAADGESTTTDGDAPAAAVGAPTADAAAAERPRTRPESPFEALDQEFRELAKAMWGEEVVENLRAPTQEELAEKAAAAKEAWAKREAXXXXXXXXXXXXXAKRLAAMRRATMAADVSLAGDGTAYLVKVALPEGSTRDKVKLTANPDKSLRVTVSDGSTTAAVDGGGRSLYKDVRLPKDALLSEISAKFETE 1356
I DP V ++TD YALTF+LP+ + GLEV V+GRLLTV+AR TREE D G S+G WVM +++T++ +RSF LP+ +S TAS +++ +V+ + A G + + PVE+ D A +S+A+Y L+ K DG S +P S E LD EFR L + MW + ++R PT+E++A A A++ K + A+RRATMA DVS Y+VK ALP+G+TRD V+L PD ++G A G + K V LP DA S+ISA+F E
Sbjct: 106 IPDPEV-RETDAGYALTFNLPSGISDTGLEVSVSGRLLTVEARTTREENHDVISKSADKGSEGSKG-WVMTRCTTKTNAAARSFTLPDSVSNEV-TASWGNDNQVVINLTKVAHYDPVNAGGMNNVFSTMEDSGVV---------PVERRHGDDQHPSASSSAAEY---LYGSK------------LDGAS--------------------------LKPSSILE-LDLEFRSLVRDMWHGDG--SVRFPTEEQVAATVARARK------------------ERKKIVKALRRATMATDVS--EKELEYVVKFALPQGATRDDVELMVTPD-------NNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTPE 398 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig792.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig792.10.1 >prot_P-littoralis_Contig792.10.1 ID=prot_P-littoralis_Contig792.10.1|Name=mRNA_P-littoralis_Contig792.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=505bp MMHRSPSFSSTLAPAAVTMDCTPWGMEGYAVHPFDAGGGLQRRRRRRRPRback to top mRNA from alignment at P-littoralis_Contig792:62985..66168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig792.10.1 ID=mRNA_P-littoralis_Contig792.10.1|Name=mRNA_P-littoralis_Contig792.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3184bp|location=Sequence derived from alignment at P-littoralis_Contig792:62985..66168- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig792:62985..66168- >mRNA_P-littoralis_Contig792.10.1 ID=mRNA_P-littoralis_Contig792.10.1|Name=mRNA_P-littoralis_Contig792.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1515bp|location=Sequence derived from alignment at P-littoralis_Contig792:62985..66168- (Pylaiella littoralis U1_48)back to top |