mRNA_P-littoralis_Contig792.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig792.7.1
Unique NamemRNA_P-littoralis_Contig792.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A6H5L661_9PHAE (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L661_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 9.380e-45
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADARGDVFRGLEVVEQACGVG AMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLA+AAGNTFV+ 
Sbjct:  143 LADARGDVFRGLEVVEQACGVGAAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAIAAGNTFVMK 221
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: D8LR91_ECTSI (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR91_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.700e-44
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADARGDVFRGLEVVEQACGVG AMMGETLGGVAAGMDTYSYREP+GVCAGICPFNFPAMIPLWMFPLA+AAGNTFV+ 
Sbjct:  104 LADARGDVFRGLEVVEQACGVGAAMMGETLGGVAAGMDTYSYREPIGVCAGICPFNFPAMIPLWMFPLAIAAGNTFVMK 182
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BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A7S2WPV6_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPV6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.500e-36
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADARGDVFRGLEVVE AC V  ++ GETLG VA+G+D+YSY+EPLGVCAG+CPFNFPAMIPLWMFP+A+A GNTFV+ 
Sbjct:  156 LADARGDVFRGLEVVETACNVATSLQGETLGNVASGLDSYSYKEPLGVCAGVCPFNFPAMIPLWMFPVAIACGNTFVLK 234
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: C5KER5_PERM5 (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) (Fragment) n=3 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KER5_PERM5)

HSP 1 Score: 129 bits (324), Expect = 4.690e-36
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   19 DARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVINLRRIVP 267
            DA+G VFRGLEVVE +C V   MMGET+ GVA G+DTYS+REPLGV AGICPFNFPAMIP+WMFPLAV AGNTF++     VP
Sbjct:   79 DAKGSVFRGLEVVEHSCSVQTIMMGETVQGVANGVDTYSFREPLGVVAGICPFNFPAMIPMWMFPLAVTAGNTFILKPSPRVP 161
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A835YL85_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL85_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.160e-36
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADARGDVFRGLEVVE A G    MMGETL  ++ G+DTYS+R+PLGVCAGICPFNFPAMIPLWMFP+A  AGNTFV+ 
Sbjct:  110 LADARGDVFRGLEVVEAAAGAAPLMMGETLEQLSGGLDTYSFRQPLGVCAGICPFNFPAMIPLWMFPMACVAGNTFVLK 188
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A392LZ29_9FABA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LZ29_9FABA)

HSP 1 Score: 129 bits (325), Expect = 1.780e-35
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   19 DARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
            DA+GDVFRGLEVVE ACG+G   MGE +  V+ G+DTYS REP+GVCAGICPFNFPAMIPLWMFPLAV  GNTFV+ 
Sbjct:  121 DAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSNGVDTYSVREPIGVCAGICPFNFPAMIPLWMFPLAVTCGNTFVLK 197
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A811SJH1_9POAL (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811SJH1_9POAL)

HSP 1 Score: 126 bits (317), Expect = 3.520e-35
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   19 DARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
            DA GDVFRGLEVVE ACG+G   MGE +  V+ G+DT+S REPLGVCAGICPFNFPAMIPLWMFP+AV  GNTFV+ 
Sbjct:   43 DAWGDVFRGLEVVEHACGMGTLQMGEYVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLK 119
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: F3GML8_PSESJ (Methylmalonate-semialdehyde dehydrogenase (Fragment) n=2 Tax=Pseudomonas syringae group TaxID=136849 RepID=F3GML8_PSESJ)

HSP 1 Score: 124 bits (311), Expect = 5.070e-35
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADA GD+FRGLEVVE AC +G   MGE    VA+G+DTY+ R+P+GVCAGI PFNFPAMIPLWMFP+A+A GNTFV+ 
Sbjct:   14 LADAEGDIFRGLEVVEHACSIGTLQMGEFAENVASGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVLK 92
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A067BI88_SAPPC (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BI88_SAPPC)

HSP 1 Score: 133 bits (335), Expect = 7.210e-35
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
             ADARGDVFRGLE+VE +CG+G  MMGETLG +A  +DTYSY++PLGVCAGICPFNFPAMIPLWMFP+ +  GNT+++ 
Sbjct:  117 LADARGDVFRGLEIVEASCGIGNHMMGETLGNLANSLDTYSYKQPLGVCAGICPFNFPAMIPLWMFPVGITTGNTYILK 195
[Close]
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Match: A0A2V0PLS9_9CHLO (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PLS9_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 7.970e-35
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:   13 FADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPLGVCAGICPFNFPAMIPLWMFPLAVAAGNTFVIN 249
            F DARGDVFRGLEVVE A G+   +MGET+  VAAG+D YSYR+PLGVCAGICPFNFPAM+PLW+FP+A+AAGNTFV+ 
Sbjct:  136 FQDARGDVFRGLEVVEAAAGIAPLLMGETVENVAAGIDCYSYRQPLGVCAGICPFNFPAMVPLWLFPMAIAAGNTFVLK 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig792.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L661_9PHAE9.380e-4593.67Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
D8LR91_ECTSI1.700e-4492.41Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
A0A7S2WPV6_9STRA1.500e-3675.95Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
C5KER5_PERM54.690e-3672.29Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
A0A835YL85_9STRA7.160e-3674.68Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
A0A392LZ29_9FABA1.780e-3575.32Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
A0A811SJH1_9POAL3.520e-3574.03Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
F3GML8_PSESJ5.070e-3568.35Methylmalonate-semialdehyde dehydrogenase (Fragmen... [more]
A0A067BI88_SAPPC7.210e-3570.89Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]
A0A2V0PLS9_9CHLO7.970e-3574.68Methylmalonate-semialdehyde dehydrogenase (CoA acy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig792contigP-littoralis_Contig792:45971..46729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR91
PFAMsAldedh
Model size279
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004491,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Exons2
Evalue2.78e-45
EggNOG OGsKOG2449@1|root,KOG2449@2759|Eukaryota
EC1.2.1.18,1.2.1.27
Descriptionmethylmalonate-semialdehyde dehydrogenase (acylating) activity
Cds size276
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791622.1748416-CDS-P-littoralis_Contig792:45970..461331680791622.1748416-CDS-P-littoralis_Contig792:45970..46133Pylaiella littoralis U1_48CDSP-littoralis_Contig792 45971..46133 +
1680791622.1889977-CDS-P-littoralis_Contig792:46614..467271680791622.1889977-CDS-P-littoralis_Contig792:46614..46727Pylaiella littoralis U1_48CDSP-littoralis_Contig792 46615..46727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig792.7.1prot_P-littoralis_Contig792.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig792 45971..46727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig792.7.1

>prot_P-littoralis_Contig792.7.1 ID=prot_P-littoralis_Contig792.7.1|Name=mRNA_P-littoralis_Contig792.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
ENSGFADARGDVFRGLEVVEQACGVGVAMMGETLGGVAAGMDTYSYREPL
GVCAGICPFNFPAMIPLWMFPLAVAAGNTFVINLRRIVPARR
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mRNA from alignment at P-littoralis_Contig792:45971..46729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig792.7.1 ID=mRNA_P-littoralis_Contig792.7.1|Name=mRNA_P-littoralis_Contig792.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig792:45971..46729+ (Pylaiella littoralis U1_48)
GAGAATTCCGGCTTTGCAGACGCGCGAGGTGACGTGTTCCGAGGTCTGGA
GGTGGTTGAGCAGGCGTGTGGAGTGGGGGTGGCCATGATGGGCGAGACTC
TCGGAGGGGTGGCGGCGGGGATGGACACTTACTCGTACCGCGAACCTCTT
GGCGTCTGCGCCGGTGAGACGTGATTAAGATGGATCATGGCTTGTTTTTG
CACCTAGCCATCCTTTTGATAAAAAAGAGAAAGGCTACCGTAAGTGCCGG
CAGTTTCATTGCTGGTCAACCTCGCTTCCGCCGATGTTATGGTTGGCCGA
GAACGCTCGACTGGCGGACGGTGGCCTCCAGAATCTTGGCGTTACTTTAC
TTTTCGGAAAACGTCAATTTGGCGGTGGACGGTGCATGGACGACGCCATC
GATCCTCCTTTCACAGCTTGAGAAAGGGACCGAAATAATCGCTTGTACCA
GTAGATTTCAACCCGCCGTGCTCTCTGAACGCGAGCGTTTTTACTTTGGT
GTTGCGTGTATGATATGTCGTTTGAAAATTCATCCCAGATGTCATCGTGG
GTCAATTTCTCTAATGCGTGAGTTCGATGTGCAGAAGCAGACTCCCCTCC
CTCCCCTGCTCCCGCTCCCGCCGCTGCCCTTTTTTCTCCTGCAGGAATCT
GTCCGTTCAATTTCCCCGCCATGATCCCTCTGTGGATGTTCCCCCTCGCT
GTCGCGGCCGGAAACACGTTCGTCATAAACCTTCGGAGAATTGTCCCGGC
GCGGCGATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig792:45971..46729+

>mRNA_P-littoralis_Contig792.7.1 ID=mRNA_P-littoralis_Contig792.7.1|Name=mRNA_P-littoralis_Contig792.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig792:45971..46729+ (Pylaiella littoralis U1_48)
GAGAATTCCGGCTTTGCAGACGCGCGAGGTGACGTGTTCCGAGGTCTGGA
GGTGGTTGAGCAGGCGTGTGGAGTGGGGGTGGCCATGATGGGCGAGACTC
TCGGAGGGGTGGCGGCGGGGATGGACACTTACTCGTACCGCGAACCTCTT
GGCGTCTGCGCCGGAATCTGTCCGTTCAATTTCCCCGCCATGATCCCTCT
GTGGATGTTCCCCCTCGCTGTCGCGGCCGGAAACACGTTCGTCATAAACC
TTCGGAGAATTGTCCCGGCGCGGCGA
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