mRNA_P-littoralis_Contig792.3.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig792.3.3 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE) HSP 1 Score: 278 bits (711), Expect = 9.450e-82 Identity = 190/501 (37.92%), Postives = 266/501 (53.09%), Query Frame = 1
Query: 109 AVISRTLAQEAAAAIRSRPAPSQLGIPLSRDLLWEFKRVLVKFGGKNLTQAGQKTFQALPIAYAAVATKQSGQMTGAEREVSSTNSLVKFAITNFLLLVKEAAHDLALPLPLDLDEKINLTTLGKGQKPVQTFVQNKGACWTKFTALKTDYTKGPQAHFDMGPQNEEEFESGKTSEDYLMALLKHMWTQSSEYKSAAAQDLTGDESGGDTIEINTGNFSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSPVGSKPVCDCK--EECKL-----GDGIWECANPDADAACSFVDFVGSPSKENGGVHPSANAGAVAAAGLVAGGSAXXXAAGASK---------------KLPEMPEGWFFQHLIMACAWSSWSGNTPSEWKYLCASSGKSQKVKDEDKLDLASNPLSSP----EAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLREEA 1533
A +R LAQEAA R S+LG+PLS DLL F+ VL+K GGK ++ QKTFQA PIAYAA+ KQS QM ER+V T +LV+FAI F++L K AA L LPLPLD+++K+ LT+LG G+KP +F ACWTK+ +K DYTK Q +D GPQ EFESG++SEDY L++ +W +S E K A A DLT + + G+ SAAA + KP CDC +EC + G W+CA S ++ +H + A GL + G A AG + +P+GWF ++I+A AWS W GN P++W+ L AS GK+ K D++ AS PLSSP E+ A+ARKM NG+S SRR +AA+ E +RVRR +D EN+A ++ +K+ + AM++ NE + ++ +++ M L+ +A
Sbjct: 69 AAAARALAQEAALRAREEAEQSKLGVPLSNDLLRAFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTSLGTGKKPAVSFKDKPRACWTKWETIKRDYTKEIQIIYDEGPQTASEFESGQSSEDYAAKLIEEVWQRSDECKKAEAVDLTQTTP---AVIADAGSLSAAAARFQEVGTGSAGEGSAGGHE-------------MDPKPECDCDPPQECTIAVDENGKKYWQCATEAVRPLESCFCYI---------LHGADEVDAAGEGGLPSSGGAEAAGAGVXXXXXXXXXXXXXXXXGESTPVPDGWFHPYIIIAAAWSPWGGNCPTQWQNLSASDGKAPTNKKGDQI--ASGPLSSPGALAESTASARKMENNNGNSVSRRAHQAALNAETDRVRRDKRDNENMAQQEKATALKKEALQAMQKGNENSGKLVASMEEMVGLKRKA 542
BLAST of mRNA_P-littoralis_Contig792.3.3 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI) HSP 1 Score: 199 bits (507), Expect = 7.580e-54 Identity = 169/516 (32.75%), Postives = 245/516 (47.48%), Query Frame = 1
Query: 178 LGIPLSRDLLWEFKRVLVKFGGKNLTQAGQKTFQALPIAYAAVATKQSGQMTGAEREVSSTNSLVKFAITNFLLLVKEAAHDLA--LPLPLDLDEKINLTTLGKGQKPVQTFVQNKGACWTKFTALKTDYTKGPQAHFDMGPQNEEEFESGKTSEDYLMALLKHMWTQSSEYKSAAAQDLTGDESGGDTIEINTGNFSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATSPVGSKPVCDCKEECKLGDGIWECANPDADAACSFVDFVGSPSKENGGVHPSANAGAVAAAGLV----AGGSAXXXAAGASKKLPE----MPEGWFFQHLIMACAWSSWSGNTPSEWKYLCASSGKSQKVKDEDK------------LDLASNPLSSPEAMAAARKMLTGNGDSSSRRQTEAAVKLEAERVRRATKDKENLALMRESQVTRKKGVNAMEQVNETAVEMNKNLKRMADLREEANSFEGLKIQAAKRARMIESLEKRCHLARGQDMALNEKLNRLL 1659
L I L+ D++W F R KFGG+ + QAG K Q +PIA+AA+A KQ M R + + + + A+ ++ + + A D L P + + TTLG G+ P QTF++N A +TKF ALKT+YTKG Q FD P++ E SG + D L L M+ ++++ +AA +D D I NT SA TSP+ + P ADA S A A AA + A +A +GA+ PE +P+ +++ +L++AC WSSWSGNTPSEWK+L ASSG + DK + NP+ SP AM ++ NGD+ SRRQ A +K E E+V++ K+KEN+AL E+ TRK+G+ AME N E++ N+K+M L+EE+N AA+R IE+LE++ LA + +LN LL
Sbjct: 14 LNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPRQTFMKNPKALFTKFKALKTEYTKGAQLWFDTHPESSTELNSGTQTTDALDDLSADMYRKATK-GNAAKEDAAAD------IFFNTPRRSAEGVVVSGVT----------------------TTSPLPT---------------------PAADAXXXXXXXXXXXXXXXXXXXTSPQALARRAAEALRREMASPTASGSGSGANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMG----LMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALDTRKRGLAAMESANTHVGELSSNIKKMVQLQEESNL-------AARRKDKIEALERKLMLAISDPNMVKAQLNALL 468
BLAST of mRNA_P-littoralis_Contig792.3.3 vs. uniprot
Match: A0A6H5LQW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQW7_9PHAE) HSP 1 Score: 122 bits (306), Expect = 3.280e-29 Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 109 AVISRTLAQEAAAAIRSRPAPSQLGIPLSRDLLWEFKRVLVKFGGKNLTQAGQKTFQALPIAYAAVATKQSGQMTGAEREVSSTNSLVKFAITNFLLLVKEAAHDLALPLPLDLDEKINLTTLG 480
A +R LAQ AA R S+LG+PLS DLL EF+ VL+K GGK ++ QKTFQA PIAYAA+ KQS QM ER+V T +LV+FAI F++L K AA L LPLPLD+++K+ LT+LG
Sbjct: 6 AAAARALAQAAALRARDEAEQSKLGVPLSNDLLREFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTSLG 129 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig792.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig792.3.3 >prot_P-littoralis_Contig792.3.3 ID=prot_P-littoralis_Contig792.3.3|Name=mRNA_P-littoralis_Contig792.3.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=533bp MASEMPNAAVISRTLAQEAAAAIRSRPAPSQLGIPLSRDLLWEFKRVLVKback to top mRNA from alignment at P-littoralis_Contig792:12569..16492- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig792.3.3 ID=mRNA_P-littoralis_Contig792.3.3|Name=mRNA_P-littoralis_Contig792.3.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3924bp|location=Sequence derived from alignment at P-littoralis_Contig792:12569..16492- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig792:12569..16492- >mRNA_P-littoralis_Contig792.3.3 ID=mRNA_P-littoralis_Contig792.3.3|Name=mRNA_P-littoralis_Contig792.3.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1599bp|location=Sequence derived from alignment at P-littoralis_Contig792:12569..16492- (Pylaiella littoralis U1_48)back to top |