mRNA_P-littoralis_Contig792.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig792.8.1
Unique NamemRNA_P-littoralis_Contig792.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig792.8.1 vs. uniprot
Match: D8LP69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP69_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.530e-23
Identity = 53/150 (35.33%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:    1 CYGCDKGSVWYRCINGTGDVTKSCESFKTVERRAASAGMLFSSLSEQASAFVDKM*EFDISDLPDMIGDFINTIEESLVQLKSKVAEKIQLVITFLREKAAEMFGRIKGAAIDVYDNHIRKVIDPMIAFVMNFIVDPFVSLINKIIELRK 450
            C+GC K   WYRC+  TG  T SC + K  + R  +AG +     ++A  ++D + +F  ++LP +I DFI T+++ ++ LK ++AEKI L++TFLR+K    + ++KG A+  Y+  +  VI+P+I F +  ++ P   +  KI+E R+
Sbjct:   42 CFGCQKDGFWYRCVMDTGHGTASCAAHKAAKNRVETAGRIM----DEAGVYMDNLWDFTKTELPGVISDFIATLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAVSTYERFMDVVINPVIKFFVANLLQPATVVFEKIMEFRE 187
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BLAST of mRNA_P-littoralis_Contig792.8.1 vs. uniprot
Match: Q8QNM9_ESV1K (EsV-1-34 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM9_ESV1K)

HSP 1 Score: 112 bits (280), Expect = 1.080e-22
Identity = 53/149 (35.57%), Postives = 90/149 (60.40%), Query Frame = 1 
Query:    1 CYGCDKGSVWYRCINGTGDVTKSCESFKTVERRAASAGMLFSSLSEQASAFVDKM*EFDISDLPDMIGDFINTIEESLVQLKSKVAEKIQLVITFLREKAAEMFGRIKGAAIDVYDNHIRKVIDPMIAFVMNFIVDPFVSLINKIIELR 447
            C+GC K   WYRC+  TGD T SC + K  + R  +AG +     ++A  ++D + +F  ++LP +I DFI T+++ ++ LK ++AEKI L+I FLR+K    + +IK  A+  Y+  +  VI+P+I F +  ++ P + +  K +E R
Sbjct:   42 CFGCQKNGFWYRCVMDTGDGTASCAAHKAAKSRVETAGRIM----DEAGVYMDNLWDFTKTELPGVISDFIATLKDQVLGLKDRMAEKINLIIAFLRDKIELFWSKIKNVAVSTYEKFMEVVINPVIKFFVANLLKPAIVVFEKNMEFR 186
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BLAST of mRNA_P-littoralis_Contig792.8.1 vs. uniprot
Match: A0A836CIF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.270e-6
Identity = 30/105 (28.57%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  181 SDLPDMIGDFINTIEESLVQLKSKVAEKIQLVITFLREKAAEMFGRIKGAAIDVYDNHIRKVIDPMIAFVMNFIVDPFVSLINKIIELRKPGVGHPENGIREDGK 495
            S LP  + DF N +   + ++ ++V  ++Q V    ++K AE+F  +K   +D ++    KVI+P++A +M ++++P   L++KII   K  +G   + + + GK
Sbjct:   15 SHLPQYLYDFANVLLAKVREIAAEVYVRLQNVAAIAKQKMAEVFHSLKNVVLDTWETVYDKVINPVMAALMKYVLEPVTELMSKIIAFAKMIIGGVSDMLDKGGK 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig792.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP69_ECTSI2.530e-2335.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
Q8QNM9_ESV1K1.080e-2235.57EsV-1-34 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A836CIF8_9STRA8.270e-628.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig792contigP-littoralis_Contig792:50436..51865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1430
Hectar predicted targeting categoryother localisation
Exons1
Cds size834
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.9333563-UTR-P-littoralis_Contig792:50435..505441680791621.9333563-UTR-P-littoralis_Contig792:50435..50544Pylaiella littoralis U1_48UTRP-littoralis_Contig792 50436..50544 -
1680791621.959477-UTR-P-littoralis_Contig792:51378..518651680791621.959477-UTR-P-littoralis_Contig792:51378..51865Pylaiella littoralis U1_48UTRP-littoralis_Contig792 51379..51865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.9435859-CDS-P-littoralis_Contig792:50544..513781680791621.9435859-CDS-P-littoralis_Contig792:50544..51378Pylaiella littoralis U1_48CDSP-littoralis_Contig792 50545..51378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig792.8.1prot_P-littoralis_Contig792.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig792 50545..51378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig792.8.1

>prot_P-littoralis_Contig792.8.1 ID=prot_P-littoralis_Contig792.8.1|Name=mRNA_P-littoralis_Contig792.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
MANIGIADFVGDVVDIGKKIPEAIENLEEMIINLLNGMKGKLFDVVNGAV
SGTVNGVNKSVNTLPDGLENGIRGIVSGINNAMDVAERGVGGIVTGVNNS
MNSVESVVNGVSNGMEGSVYRIVGSVNSVVSKISSIKNKEIKVSLWGVKP
FSFLGDTPTVRTLNIPTLNIKDMHAKAQLPKRQGTKHPGDQAEAPHDPRT
GGPGSGRFQHASYPGLRIFFGKDCLPEVIGREHLRDGNGAPIRRGCNTVV
NRHHRGRVDVNIHQREPDFGEYRGEAW*
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mRNA from alignment at P-littoralis_Contig792:50436..51865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig792.8.1 ID=mRNA_P-littoralis_Contig792.8.1|Name=mRNA_P-littoralis_Contig792.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1430bp|location=Sequence derived from alignment at P-littoralis_Contig792:50436..51865- (Pylaiella littoralis U1_48)
TGCTACGGCTGCGACAAGGGTTCCGTGTGGTACCGGTGCATCAACGGCAC
TGGCGACGTCACCAAGTCCTGCGAGTCGTTCAAGACCGTCGAGAGGAGAG
CCGCGTCGGCCGGGATGCTCTTCTCGTCGCTCTCCGAGCAGGCGAGCGCC
TTCGTGGACAAGATGTGAGAGTTCGACATTTCTGACCTGCCCGACATGAT
TGGAGATTTCATCAACACCATCGAGGAATCCCTGGTACAACTCAAGTCGA
AGGTCGCGGAAAAAATCCAGCTGGTGATAACCTTCCTGAGGGAAAAAGCG
GCCGAAATGTTCGGGAGGATAAAGGGGGCGGCGATAGATGTCTACGACAA
CCACATCAGGAAGGTGATCGACCCGATGATTGCGTTCGTGATGAACTTCA
TCGTGGACCCGTTCGTGAGTCTCATCAACAAAATCATAGAGCTCCGGAAA
CCTGGTGTGGGACACCCTGAAAACGGCATACGAGAAGATGGCAAATATAG
GGATCGCGGACTTCGTGGGGGACGTTGTGGACATCGGCAAGAAGATCCCG
GAAGCCATTGAGAATCTCGAGGAGATGATAATTAACCTATTGAACGGCAT
GAAGGGGAAGCTGTTCGACGTCGTGAACGGGGCCGTTTCCGGGACGGTCA
ATGGAGTGAACAAGAGCGTCAACACGCTGCCCGATGGGTTGGAGAATGGC
ATCAGGGGTATCGTGAGCGGGATCAACAACGCGATGGATGTTGCCGAGAG
GGGGGTCGGGGGGATCGTAACTGGGGTTAACAATTCCATGAACAGCGTAG
AGAGCGTGGTCAACGGCGTTTCAAACGGTATGGAGGGTTCCGTGTACAGG
ATTGTGGGTTCCGTAAACAGCGTCGTCTCAAAGATTTCCTCCATCAAGAA
CAAGGAGATCAAGGTATCATTGTGGGGGGTGAAACCGTTCAGCTTTCTGG
GGGATACCCCGACTGTAAGAACGCTAAACATACCAACTCTGAATATCAAG
GACATGCATGCCAAAGCCCAACTTCCCAAGCGTCAGGGCACCAAACATCC
CGGGGATCAAGCTGAAGCTCCCCACGATCCGCGAACCGGAGGACCTGGAA
GCGGACGATTTCAACATGCCAGCTATCCCGGGCTTCGGATTTTTTTCGGA
AAAGATTGCCTGCCTGAAGTCATCGGCCGTGAGCATCTTCGAGACGGCAA
TGGTGCCCCTATTCGACGCGGTTGCAATACTGTCGTTAACCGTCACCACC
GTGGTCGTGTCGATGTCAACATTCATCAACGAGAACCTGACTTTGGAGAG
TATAGGGGGGAGGCTTGGTGACCTGTTGAGCGTGGTGGGTGCGCAGAAGG
ACAAGCTGGTGGGGTTCATCGGGGACACCCTCGTGCCCGCGCTAGTGGAG
CTCATCAAGGCAGTTTCCGAGCCGATCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig792:50436..51865-

>mRNA_P-littoralis_Contig792.8.1 ID=mRNA_P-littoralis_Contig792.8.1|Name=mRNA_P-littoralis_Contig792.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig792:50436..51865- (Pylaiella littoralis U1_48)
ATGGCAAATATAGGGATCGCGGACTTCGTGGGGGACGTTGTGGACATCGG
CAAGAAGATCCCGGAAGCCATTGAGAATCTCGAGGAGATGATAATTAACC
TATTGAACGGCATGAAGGGGAAGCTGTTCGACGTCGTGAACGGGGCCGTT
TCCGGGACGGTCAATGGAGTGAACAAGAGCGTCAACACGCTGCCCGATGG
GTTGGAGAATGGCATCAGGGGTATCGTGAGCGGGATCAACAACGCGATGG
ATGTTGCCGAGAGGGGGGTCGGGGGGATCGTAACTGGGGTTAACAATTCC
ATGAACAGCGTAGAGAGCGTGGTCAACGGCGTTTCAAACGGTATGGAGGG
TTCCGTGTACAGGATTGTGGGTTCCGTAAACAGCGTCGTCTCAAAGATTT
CCTCCATCAAGAACAAGGAGATCAAGGTATCATTGTGGGGGGTGAAACCG
TTCAGCTTTCTGGGGGATACCCCGACTGTAAGAACGCTAAACATACCAAC
TCTGAATATCAAGGACATGCATGCCAAAGCCCAACTTCCCAAGCGTCAGG
GCACCAAACATCCCGGGGATCAAGCTGAAGCTCCCCACGATCCGCGAACC
GGAGGACCTGGAAGCGGACGATTTCAACATGCCAGCTATCCCGGGCTTCG
GATTTTTTTCGGAAAAGATTGCCTGCCTGAAGTCATCGGCCGTGAGCATC
TTCGAGACGGCAATGGTGCCCCTATTCGACGCGGTTGCAATACTGTCGTT
AACCGTCACCACCGTGGTCGTGTCGATGTCAACATTCATCAACGAGAACC
TGACTTTGGAGAGTATAGGGGGGAGGCTTGGTGA
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