mRNA_P-littoralis_Contig791.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig791.2.1
Unique NamemRNA_P-littoralis_Contig791.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig791.2.1 vs. uniprot
Match: Q8QN61_ESV1K (EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN61_ESV1K)

HSP 1 Score: 211 bits (538), Expect = 6.480e-66
Identity = 116/197 (58.88%), Postives = 129/197 (65.48%), Query Frame = 1 
Query:   85 RVRRQQTYDCFRDHGAEELSPVQALGKLSAV------------------------------GLVTTDSQMGAKKQITHYVDGHVLNPPVTIWQRSYISGISAKDLGHKG*P*P*P*T*VDGVDFFIGRHGHVPPYALTHYIKVTMAHQND-EPDFCTSMPMATHTLGYDLSCFLPEVQHVVQSDTCTRIVEEDAFVV 582
            R+RRQ+ YDCF D G EELSPVQALGKLSAV                              GLVTTDSQMGAKK ++H+ DGHVLNPPVT WQRSYISGI AK LG K          VDGVDFF+  HG  PPYALTH I VTM  Q D EP+F T++PMATH L Y LS  LPEV+HV+Q+DTC RIVEEDA +V
Sbjct:   26 RIRRQRVYDCFGDQGPEELSPVQALGKLSAVAMLTTVRVGDPGEDASMAQARPYLSEVNKRGLVTTDSQMGAKKHLSHHFDGHVLNPPVTQWQRSYISGILAKGLGGKFAQ---KMRLVDGVDFFLDWHGESPPYALTHDINVTMYRQGDNEPNFFTNVPMATHPLAYSLSGVLPEVEHVLQNDTCVRIVEEDALLV 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig791.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN61_ESV1K6.480e-6658.88EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig791contigP-littoralis_Contig791:4590..5171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size582
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.6957123-UTR-P-littoralis_Contig791:4589..48471680791621.6957123-UTR-P-littoralis_Contig791:4589..4847Pylaiella littoralis U1_48UTRP-littoralis_Contig791 4590..4847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.716321-CDS-P-littoralis_Contig791:4847..51711680791621.716321-CDS-P-littoralis_Contig791:4847..5171Pylaiella littoralis U1_48CDSP-littoralis_Contig791 4848..5171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig791.2.1prot_P-littoralis_Contig791.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig791 4848..5171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig791.2.1

>prot_P-littoralis_Contig791.2.1 ID=prot_P-littoralis_Contig791.2.1|Name=mRNA_P-littoralis_Contig791.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MSSPPGSPPGTPPSQRGGQPPPVRRSSNRVRRQQTYDCFRDHGAEELSPV
QALGKLSAVGLVTTDSQMGAKKQITHYVDGHVLNPPVTIWQRSYISGISA
KDLGHKG*
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mRNA from alignment at P-littoralis_Contig791:4590..5171-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig791.2.1 ID=mRNA_P-littoralis_Contig791.2.1|Name=mRNA_P-littoralis_Contig791.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig791:4590..5171- (Pylaiella littoralis U1_48)
ATGTCCTCTCCCCCAGGCTCGCCACCGGGCACGCCTCCGAGCCAGCGCGG
GGGGCAACCTCCGCCTGTGCGACGTAGCAGCAATCGTGTCCGAAGGCAGC
AGACCTACGATTGTTTCAGGGACCACGGCGCGGAGGAATTGTCTCCTGTA
CAGGCGCTTGGGAAGTTGAGTGCCGTCGGTCTCGTAACGACAGATTCGCA
GATGGGAGCGAAAAAGCAGATAACCCACTATGTTGACGGACACGTCCTCA
ATCCTCCGGTAACAATCTGGCAACGATCGTACATCAGCGGTATCTCGGCA
AAAGACTTGGGGCATAAGGGTTAACCCTAACCCTAACCCTAAACCTAGGT
CGATGGCGTAGACTTTTTCATCGGTCGGCACGGCCACGTTCCGCCTTATG
CCTTGACACATTATATAAAAGTCACGATGGCACACCAAAATGACGAGCCT
GACTTTTGCACTTCTATGCCTATGGCGACTCACACTCTTGGTTATGATTT
ATCCTGCTTTTTGCCCGAGGTTCAGCATGTAGTGCAGAGCGACACCTGTA
CAAGGATTGTGGAAGAAGACGCTTTCGTGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig791:4590..5171-

>mRNA_P-littoralis_Contig791.2.1 ID=mRNA_P-littoralis_Contig791.2.1|Name=mRNA_P-littoralis_Contig791.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig791:4590..5171- (Pylaiella littoralis U1_48)
ATGTCCTCTCCCCCAGGCTCGCCACCGGGCACGCCTCCGAGCCAGCGCGG
GGGGCAACCTCCGCCTGTGCGACGTAGCAGCAATCGTGTCCGAAGGCAGC
AGACCTACGATTGTTTCAGGGACCACGGCGCGGAGGAATTGTCTCCTGTA
CAGGCGCTTGGGAAGTTGAGTGCCGTCGGTCTCGTAACGACAGATTCGCA
GATGGGAGCGAAAAAGCAGATAACCCACTATGTTGACGGACACGTCCTCA
ATCCTCCGGTAACAATCTGGCAACGATCGTACATCAGCGGTATCTCGGCA
AAAGACTTGGGGCATAAGGGTTAA
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