mRNA_P-littoralis_Contig79.133.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.133.2
Unique NamemRNA_P-littoralis_Contig79.133.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig79.133.2 vs. uniprot
Match: D7G1Q6_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q6_ECTSI)

HSP 1 Score: 587 bits (1514), Expect = 1.820e-205
Identity = 318/505 (62.97%), Postives = 364/505 (72.08%), Query Frame = 1 
Query:    1 MSSLSSAMFAGYNKFDNAKVRIGSWREELALKELTGVTRLANPRDKAVFNATGVRVLYHADKPGEKDPGEGKSVSETSFVHPEKVSTTKDRSAYRAPGPRSVLAKQRTRQCSYLHLPVHPFRAILASEVAERAALEVEKKNKGDFDTTFKQSYRRYSDEASRSAKQESLKPRPNKPKQGASGPTPETLAVNASDIIASGSEPEF-EVGHYSTGKTITLWDAGGMAHGGKHGRGLFGRTSTFTEPGVHPSFFQEVWPDPGPHHKSLPRGLSDLEAASLMFLKRRVLERAQKQPLPSVRGLWRLLWPRTYRDAVGKIGQREFREAMAAFEVPVTQCEVWTVTTAFDNDGSGQICLDKLIHFVRVGGLSEARRNRVRELFRRLDSTNAGEVSLGRILAACDFSRLPAVTKGKTGEGQVAAAFQQHFNINGESRAGEKVDMVSTERFQEAFRDIGAACVDTEETCTWEAACPRRHSECKEGVDVDTVGKDKDKDEGDLLFEAVLSSLGG 1512
            M+SL SAMFAGYNKFD+AKVRIGSWREELA+KELTGVTRLANPR++AVFNAT VRVLYHADKPG KD G GKS S TS++HPEKV+ TK+RSAY  PGPR+V ++Q  ++             I+ +E AER ALE EKK  GDFDTTF+QSY+RYSDEASR+AKQ+S+KP+P    Q    P P T A   S   +     E  EVGHYSTG T+TLW+ GGMA GG   R  FGRTS FTEPGVHPSFFQEVW DPGPHH SLPRGLSDLEA SLMFLK RV+ERAQ++PLPSVRGLWRLLWPRTY DAVGK+G  EFRE MA FEVPVT+CEVW VTTAFD D  GQICLDKL+HF R GGLSEARR  V +LFR LDS N G V L  I AACDFS  PAV +GK  E ++   F QH   N +   GE   MV+ E FQ+AFRDIG AC      C+WEAA  +   + +  +D D  G       G+ LF  V+SS+GG
Sbjct:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRQAAKE-------------IVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQA---PAPTTKAFKNSMRRSGDVMSEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWRDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKVGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHKLFRGLDSANTGAVPLSSIRAACDFSSSPAVIEGKACEEEITTEFLQHLQNNEQEGLGESSSMVTAEHFQDAFRDIGTACTSLA-ACSWEAASLQEEKKDRGHLDTDADGN-----AGEALFMGVVSSVGG 483
[Close]
BLAST of mRNA_P-littoralis_Contig79.133.2 vs. uniprot
Match: A0A6H5L3H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H9_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 5.780e-163
Identity = 273/470 (58.09%), Postives = 306/470 (65.11%), Query Frame = 1 
Query:    1 MSSLSSAMFAGYNKFDNAKVRIGSWREELALKELTGVTRLANPRDKAVFNATGVRVLYHADKPGEKDPGEGKSVSETSFVHPEKVSTTKDRSAYRAPGPRSVLAKQRTRQCSYLHLPVHPFRAILASEVAERAALEVEKKNKGDFDTTFKQSYRRYSDEASRSAKQESLKPRPNKPKQG-------------------------------------ASGPTPETLAVNASDIIASGSEPEF-EVGHYSTGKTITLWDAGGMAHGGKHGRGLFGRTSTFTEPGVHPSFFQEVWPDPGPHHKSLPRGLSDLEAASLMFLKRRVLERAQKQPLPSVRGLWRLLWPRTYRDAVGKIGQREFREAMAAFEVPVTQCEVWTVTTAFDNDGSGQ-------------------------ICLDKLIHFVRVGGLSEARRNRVRELFRRLDSTNAGEVSLGRILAACDFSRLPAVTKG 1221
            M+SL SAMFAGYNKFD+AKVRIGSWREELA+KELTGVTRLANPR+KAVFNAT VRVLYHADKPG KD G G S S TS++HPEKV+ TK+RSAY  PGPR+V ++   ++             I+ +E AER ALE EKK  GDFDTTF+QSY+RYSDEASR+AKQ+S+KP+P    QG                                        P P T  +         +  E  E GHYSTG T+TLW+ GGMA GGK  R   GRTS FTEPGVHPSF QEVWPD GPHH SLPRGLSDLEA SLMFLK+RV+ERAQ++PLPS+RGLW    PRTY DAVGKIG  EFRE MA FEVPVT+CEVW VTTAFD +  GQ                         ICLDKLIHF R GGLSEARR  V ELFR LDS N G V L  I A CDFS  PAV +G
Sbjct:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNKAVFNATDVRVLYHADKPGAKDAGRGTSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRLAAKE-------------IVLAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQGNHPTDIFKPTWQPIPKLPADLFVTKYLCSGHAARAVPTKAPAPSTKVLKNGMTRGGDAMSEIGEGGHYSTGTTVTLWNTGGMARGGKADRASLGRTSRFTEPGVHPSFSQEVWPDAGPHHASLPRGLSDLEARSLMFLKKRVIERAQEKPLPSMRGLW----PRTYADAVGKIGPAEFREGMAEFEVPVTKCEVWVVTTAFDTNNRGQEDAQRHGLHRSFKTKATNDFPVILQICLDKLIHFFRAGGLSEARRKVVHELFRGLDSANTGAVPLSSIRAVCDFSSSPAVIRG 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.133.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Q6_ECTSI1.820e-20562.97EF hand family protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3H9_9PHAE5.780e-16358.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:599125..612066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000021007
PFAMsEF-hand_7
Model size1518
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons12
Evalue5.38e-05
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,1MJ3N@121069|Pythiales
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_000040.1
DescriptionEF-hand domain pair
Cds size1518
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.133.2prot_P-littoralis_Contig79.133.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 599125..612066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791620.337429-CDS-P-littoralis_Contig79:599124..5993591680791620.337429-CDS-P-littoralis_Contig79:599124..599359Pylaiella littoralis U1_48CDSP-littoralis_Contig79 599125..599359 -
1680791620.3561106-CDS-P-littoralis_Contig79:599746..5998091680791620.3561106-CDS-P-littoralis_Contig79:599746..599809Pylaiella littoralis U1_48CDSP-littoralis_Contig79 599747..599809 -
1680791620.3664823-CDS-P-littoralis_Contig79:601239..6014121680791620.3664823-CDS-P-littoralis_Contig79:601239..601412Pylaiella littoralis U1_48CDSP-littoralis_Contig79 601240..601412 -
1680791620.3805583-CDS-P-littoralis_Contig79:601781..6018641680791620.3805583-CDS-P-littoralis_Contig79:601781..601864Pylaiella littoralis U1_48CDSP-littoralis_Contig79 601782..601864 -
1680791620.3919501-CDS-P-littoralis_Contig79:602826..6028821680791620.3919501-CDS-P-littoralis_Contig79:602826..602882Pylaiella littoralis U1_48CDSP-littoralis_Contig79 602827..602882 -
1680791620.400478-CDS-P-littoralis_Contig79:603301..6034981680791620.400478-CDS-P-littoralis_Contig79:603301..603498Pylaiella littoralis U1_48CDSP-littoralis_Contig79 603302..603498 -
1680791620.4109476-CDS-P-littoralis_Contig79:604599..6047761680791620.4109476-CDS-P-littoralis_Contig79:604599..604776Pylaiella littoralis U1_48CDSP-littoralis_Contig79 604600..604776 -
1680791620.4256563-CDS-P-littoralis_Contig79:604946..6050271680791620.4256563-CDS-P-littoralis_Contig79:604946..605027Pylaiella littoralis U1_48CDSP-littoralis_Contig79 604947..605027 -
1680791620.4349773-CDS-P-littoralis_Contig79:605924..6060471680791620.4349773-CDS-P-littoralis_Contig79:605924..606047Pylaiella littoralis U1_48CDSP-littoralis_Contig79 605925..606047 -
1680791620.4470263-CDS-P-littoralis_Contig79:607326..6074041680791620.4470263-CDS-P-littoralis_Contig79:607326..607404Pylaiella littoralis U1_48CDSP-littoralis_Contig79 607327..607404 -
1680791620.4594693-CDS-P-littoralis_Contig79:607935..6080231680791620.4594693-CDS-P-littoralis_Contig79:607935..608023Pylaiella littoralis U1_48CDSP-littoralis_Contig79 607936..608023 -
1680791620.479942-CDS-P-littoralis_Contig79:611902..6120661680791620.479942-CDS-P-littoralis_Contig79:611902..612066Pylaiella littoralis U1_48CDSP-littoralis_Contig79 611903..612066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.133.2

>prot_P-littoralis_Contig79.133.2 ID=prot_P-littoralis_Contig79.133.2|Name=mRNA_P-littoralis_Contig79.133.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=506bp
MSSLSSAMFAGYNKFDNAKVRIGSWREELALKELTGVTRLANPRDKAVFN
ATGVRVLYHADKPGEKDPGEGKSVSETSFVHPEKVSTTKDRSAYRAPGPR
SVLAKQRTRQCSYLHLPVHPFRAILASEVAERAALEVEKKNKGDFDTTFK
QSYRRYSDEASRSAKQESLKPRPNKPKQGASGPTPETLAVNASDIIASGS
EPEFEVGHYSTGKTITLWDAGGMAHGGKHGRGLFGRTSTFTEPGVHPSFF
QEVWPDPGPHHKSLPRGLSDLEAASLMFLKRRVLERAQKQPLPSVRGLWR
LLWPRTYRDAVGKIGQREFREAMAAFEVPVTQCEVWTVTTAFDNDGSGQI
CLDKLIHFVRVGGLSEARRNRVRELFRRLDSTNAGEVSLGRILAACDFSR
LPAVTKGKTGEGQVAAAFQQHFNINGESRAGEKVDMVSTERFQEAFRDIG
AACVDTEETCTWEAACPRRHSECKEGVDVDTVGKDKDKDEGDLLFEAVLS
SLGGS*
back to top

mRNA from alignment at P-littoralis_Contig79:599125..612066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.133.2 ID=mRNA_P-littoralis_Contig79.133.2|Name=mRNA_P-littoralis_Contig79.133.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=12942bp|location=Sequence derived from alignment at P-littoralis_Contig79:599125..612066- (Pylaiella littoralis U1_48)
ATGTCGTCGTTGAGCTCGGCGATGTTTGCCGGCTACAACAAGTTTGACAA
TGCAAAAGTCCGCATTGGGTCGTGGCGTGAGGAGCTGGCCCTGAAAGAGC
TCACAGGAGTGACCCGCCTAGCCAATCCGCGGGACAAGGCCGTGTTCAAC
GCGACCGGCGTAAGGTGGGGGCTATCACAGGTCGGCACCGATAAAGTATT
AGTATTGGCTCTCAGTACTCCATCAGGGGTATCATCGTATCACAAGTGCC
TACGTCTACCCTAATACCGGTATTCTGCATTACTCTTTGGTGGCGTATTA
TATGCCTGCTGCTTCACAGCAGTGCTGCTGCTACAGAATAGCTGGTGGTG
TGCTGGTGTACGTGTGCGCCAGCACAACGAACACAAAATGCCTCTCGTCA
TTTTTCACAAAAAAGGGACCCCAATAATAACGGGCCTCCGGTAAAAAAGC
TGTGCGCACATGACGCGGGCTGCGGTGAACCCAGCAGCAGTGGGTAGATG
ACATTTATCTCATCAGTTCAAGCCGTTGGTCGTAGCGATCTGTGCTGATC
TGGTGTCAAAGTGTTGCAATATGTGGCCATTATCTCGGACATGCAGACTC
ACACACAGACAAACCGACACCATAAACCTCCAAAACTAAATAAAGGCATC
CCTGTCTCCGATTTTTTTGTTTATTTTTGTTCGCACATACACTCACACCT
ACAACATCACGACAAGTCGGTATGAATTCGAAGCAGTTCGACACCGAAGT
TACACTTCGCTGCGCTCGTGGACTTCTTCTCAACATGAGGACGAAAACAT
CGCCAAAATCTCAAACTCACCCAACATTCGCCCACAAGCACTTTGTGTCA
CGTGTTGTGAAACATTTCGAAAACTTCGGCTGGGGATTCCCAGACCGACC
AGTGTCGACCCTTCTTCCTTTTTATTTTCTCACAACATTCAATGTGTTCG
CCTCTCTCTAGACGAGGATCTGGAGTAAATTGGCGACGAACACAGAGATG
AGAGTAGTACATCCACTTGCGTTTCTACAACTTTTACAGGATTGAAATTG
TTTTGGGGCAACATTTCCCAAACCCTGTAGCTTTGAACAATCTGTGTACG
AGTGCATTAGGGAACCCTTGAATTGGAAAACCTTTGCTTAGGGGACCCCC
TTAAACTTTTGCCGCGGGATCCCTTGGATTAGGGGACCCCTAAGTAAAAT
TGCCAGGAATCCCTTTGCTAGGGGTACTAGGGGTACCTCAACCTCGTTCG
TGAGTGTACTTTTTCGTACTGCAAAAGTTGAGAACCATTCCAGCTCTTAA
AGTAAAAGTTCGTTGGTGTACAGCACTGCGACGTCACACTGCTGTACTGC
TGAGTGCACTGTACTTGGTGTGAACTACACTAGACAAAACAGAACGATTT
CGTGAATTTGGTCTGCGACATGCTGAGCTGAATCTTTGGTTTTATTTTCG
TATTGTTGGTGACAGCGTACTAAACCCAACACAAGGTAACACGAAGTCGT
ATTTGCTTTGCCCTGAGAATAGCTGTGGCTAGCTCCCCAAGTTAATACAA
AAGTCGTTTTTCGTTGTCGGGAAGACAGCGTAGTCCCCCCAAAAAAAGAT
CCGACATCGTATTGGCTTTGTCCTGTGAAAAGCGAAATCACCTTTAAAAA
ATATTACAACATCGTGTTATATTTGTGTTTGGTGACAGTGTACCAAACTC
AAACATCAAGTACGAAATCGTCGGGGCTTTGCCCTGAGAACAGCTGTGTT
ATCAAGACGAACACGGCAGTGCTGTTCGCCGTTGAACTATTTTTTTCGAG
AGCTTGAATGATTCTCACGTTTTGCTGTACGAAATGGTACACTCAAGAAC
ATCTCACGAACGGTTGAGGGTAGGGGTTCCCCTGGCAATTTTTTCTTGGG
GTCCCATGATGCAACGGTTCCCCTGACAAAAAAACGTAAGGGATCCTCGA
TGCAAGGGTTCCCCATGGCAATTTCTAAAACTATGTCCTTTACTGCAAGG
GTTCCCTTAAGCACTACACCTGTCCGACGCGGCGAGATTGCGAATACCAC
ACGGGTCAATCAACAACACCAACCACTGGGCCATGGAACCTTCATGTGCG
CAGCTCGCAAAGGTCGCTAGTGTCGCCGTACCAGCGCTTCGGCCGCTGGT
TTGTGGCGAGCACGCGCAAGGCATGCAAAAACAAACATTTGACAAGCGGC
TCTTGATTTACTGTACGGGGTCACGTGACACGTGCGCTGTTTTCGTCAGG
ACCCTTCATTTCCGCGAATATTAGACTACACCAAAGCAGTCGCGTTCTCA
CTTCCCACACCACCTAGCGGAGCTTCACCTTCTTAGCTGTTGCCTCCATT
CATTGCTCGCCGTTAACGGAGTGATTGGTCGGAGGTGGGCGCATGCAATC
GGCAGAGAGAAGCATCGCTCGTTGTTCGAAGTACATACAAATCGACAGAC
CAATCTGGCCTTTCCCCCCTTGAAAATACAATGCTTGCCTGCCGCCCAAA
AACTTGAATCTAGATCAGTACAACAGATCCGATACACGGCGATGCTTCTG
CGGTCGGTTCAATAACTCCAACTCCACCTTAACCACCTTACCGATGGAGG
GCAGATAATGGAGGTGACAGCCAGTAAGATCTCGCTCGGAGAGGTGGTGC
AGGGGACGATAACGTGACTGTGTTACAGCTTGAAATCACTAGTACCTCTG
CATGAAAGGCTGTCGTTTGGGAACATACTATTAGTTACCGAGGGTGAACC
TTGTGGGTGGCCATCGTGTGGCGTCCGTCTTGTAGACAGTGTGCAGAGGC
TTACAGAGTTGCCCTGTAGGGTACTCTTGTGGATATTCGAGAGAGAGAGA
GAGAGAGTGTATAAAGTACTGTAGTGCTCATGTGGCCAAGATAGAAAATT
GTGGGAGCGTCCTGAGGCTCACAAGAGTCCCGAAGGGTCCTGAAGAAAGC
CAAGGGGTGTGGGAGAGTTCGAGGACTGTTAAAAAGTCCACACTTAATTG
TGGGAGAGTGATCAGTTAGGGGCAAGCACCACGGAGGCGAGCCATCATCT
GTCATCTAGGAAAGTTGCACACACGGGCTAATGTGCTTACCACAAACACA
CAATCAGGTGGTTAGTCCGGCCTCAAGCAAGGATGCCATAACATGTCATG
GAACCCTGTACCGTTCAACTGAGACGTTTATGGCCTACGCTCTGTTCAAC
GGTACGTTCAATGATCCGAGCACCAACGCAATGAACCAAGGACAGTTCTG
GTGAAGCCCCGTCGCGCGTGCTACTTGAATGCTGTAGCTTGACGGCACTA
CTTAAAATGTTGGGTTTTTCGCATTGAATATTCAATCACACGCGCGCGAC
CTCATACAATCCAGGCGTTGTACGCTTTCGAGCTGCATCACTGCTGTACG
TGGAACATGAGCTCACCTGCCTGTTGTACACTGCGCCAACACCTAAGAAC
TTGGAAATTAACATATTAAGCCTCACATGTCTTAAAAAGAAAAGTAGGTG
AGCACAAATATTGATGCCTGGCTGAGCACTCTACTCTAGAATATATATCA
GTTGGCTGTTGGATGTCCGCAAAGAAAAAGGACTCGAGCCTCCCGCTAAA
AAAAGCTTTCATGTGGTGGCGCTTCGTGTACTTTAGACAGTGCGATGGGC
TAATACTCCTCAAACAAGGCAGTGCGCACAGTCCACCGACATGTAGTGAG
GTGAGACAGCCATGACACGCTTTAGGAATACTTCCTGACTTGTGTCAAGA
ACCCTTCCAAGCTTGCACATAACAGAGCGTGCCTTATACTCACGCAGAAG
CAAGCAGTTGTTCTCTACACTTGTCGTAAGGCGTGCTGAGAACTTGTATG
TAGGAGGCTTCTCTAGGCATCCTTGCCTTGCTGATCTACAATATCGAAGT
TTGTGTATGCACTTTTTGCTTACGCGTCCGGCAGCAAAGCTACTGCGGGT
ACTCAGCGCCTTGCTCTGTGTCTCGCTTACCACCGCGCTTGACATTTCAC
ATTCCGCGCCTGGTCGACCACCTCGTACTACTGCATCGTGCAGGGTACTG
TATCATGCCGACAAGCCGGGGGAGAAAGATCCTGGTGAGGGTAAGAGCGT
GTCGGAGACCTCCTTTGTGCACCCTGAGAAGGTAGGCCTGGACCGCTCTG
AAAACTCTTTTTTTTCAAAGCCACCCGTCTGAAAGTGTTTCCAAACCGTC
AATACCATGCATGGTGCGGTAGCCCAACGCCTGTCATTCGATGATTGGGA
GCAGCCAAGAACAACTTTCCTTCCGTCCAACATGACTTCGGTACAGGGTG
TTAGCCATCAAAGGCTTTAGATGGGGATGGCGAGAGGCACTAGGTATCAG
ACGGGAAAACAAATACCTACAGAGAGAGAGAGAGAGAGAGGAAGAGAGCG
TCTGTGTTTTAGTCCCATTTATTCTGGGCAGCAGTCTACACCTCCGGTAT
GAAGCAGGTGCACCAGCCGGGGAAACACAGGAGGAAGGCCACCCGGGAGT
ATGATAGCAGAGGTAATGTACGGGATCTACTACATGAACATAAAAGGTTG
AGAGGCAAAATCTACTCATTTTGCGCTCCAGATTCGGATAGACGGAGACC
CGCAGCGTGTTGTTGGTGAGATGTTCGGAGAGTCTGATCCATGACCCGCT
GTTTACGAACAGGTTTCAACGACGAAGGATAGATCGGCGTACCGTGCGCC
GGGCCCGCGTTCGGTTCTGGCAAAGCAAAGAACAAGGCAAGTTTCCATAT
AGGCGTCGCAACTACGGTTGATCATCGAACTACACGTATGTGTGTATTGG
CTTTACACCCACATCAGTACGAAAGAGGACACATGATAGGTGTACGAACC
GTGTGCGTGGCGCAGCATTTTTTGTGTCCCTGTAAAACAACGTGTTTTCG
GTTATTTTGGAAATGGAAGTCTACATTCCATGAAAAGGTTCCGGAAGATC
TTTGCAAAACTCTCACAGAAAAGCGCTGGAATCGCCAGAGCCACCAAGCA
CCGCAGAAGGAAGGCATGGAAAACAAAAACATAAAAGTATTCTGTTGTTG
ACCTTCTTGTGTACTCCCGGCTTATGCGGCCACACATCCCGAAAGGTGTA
GACTTGCGCCCAACCAAGACGGGAGGCAAGACACACGCACACGTCAAGGG
GTGGCATATTTTCCGTTGTACTACAGTATACTCTGTTCAAAGAAAGACGG
TAAGTAGAAGAGTGGTACTCTGACGTACTCCCCCTCCCGACCCTTCTACG
ATTATCACGTAAATTACAGATCCCTGATGGCCCTTTTGCCGTCCTCTTAT
CTCTGAAGTGCACGCATTTAATGGTCTGAACCGTCTCTGAATAGAGGTAG
ATGATACCGGTGTGTGGATGATTTACTTTATTCTCGACTTCTTACAACAA
GAGTTCTTGTCCGACAAGTAAAATCGCCGCATTCTCCAAAAGTGGTAGGT
TGACTTTTTTCGCTCTCTTGAGACCATTCCAAATCATGCACAAAATGGCC
CTGAGAAAGCATCGACAAGTTCAAGACCAAATTATTGATCAAAGCAGGAA
TACGCTCTCAACTCAAGTTTGGTGCGGTTGCAATCAAAGTGAGTCGGCGA
ACGGTTCTTTCACTTAAAAGAGAATTCTCTACTGCATTTCGATTTGCGGT
CGAGCAGGTCGTCCATAGGAAACCCAAGGGAACCCTGAAAGCAAATCTCA
GCGGGCAGGGATCGACCCATCCCACGATACTGCTGTAGGGGTGTCGCTTT
GTGGGCCCAACGTTTCAGCGGCTCCGAGCCACTCGGCCGAGTAGCTACTC
ATGACACGTGACCGTATCATATTAAACACCTTGAAAAGAGTTGTTGCCCG
ACAGTAAGCGCGCTGCGCTTTTGTCTGGCGGTGTGAAAAACCAGGGTCAA
TCGCTAATTTTTGGCCAATTTTGAAATACACACGTGGCTAATCAAACCTC
CGCGTGTAAGTCTGGGGCACCCCCTACGATCCGATCGTGGGGAAAGTGGG
ATCGGACAATTGTGGAGAGTGCTCTTACTTACACTTACCCGTGCATCCAT
TCAGGGCGATACTGGCATCGGAAGTAGCAGAGAGAGCAGCCTTAGAAGTG
GAGAAGAAAAATAAAGGGGACTTCGACACCACCTTCAAACAGGTAGATGA
GGAAAAGTGCTTCTATTTTTTGCTTCTTATCATCAACTTTCGTGCTGCTG
TTCTTTTATTTTACTTTTCACGCCTTCAAGGTGACTAAGCTGAGATGGCC
ACGTCAAGAGATCATACTTCTACCCCTGGTGTATTTCTTACCAATTCCTT
TTCGTGCTAAGGGAGTAGCGACTGTTCGCGAAGAGATCGGCCACATTTGT
TGGAGAAGGCGTGGAACTGTTTTGTCGTATTCTGTTCCCATGGCTACACG
GCGCGTTAAATGTATTGTCCGTGTTTCAGTGAAACCATTTTTAGTTTGTT
GATCTCACCGATTATACTTTTACGAATGATCTCCTGAAGTTTGTGCTGGG
TGCGCCCTTTGGGGTTGCGTCTCGCGCAAATGACAATGATGCACGACACG
CTGCCCTCTTTGGCAAAGAAGCGGACTAATAGTTGCAGCAGTTCTCGTGT
CGCTGCGAGCGATACCTCGCAAGAATCATTTCGCATTTGTTCTGCACTAA
ACTCTAGCACGCACGGTAGATATCACATTCTCACACATGCGCAGTTCTGT
GGTACGCTCTTCAAAAAACAAATGCGGCACTGTGTTTCGACACCTGAGAC
TTTTTTCACTGGATGACGTGTTCTTCATGTGTTCTTTTGGGCTCAATGTG
ACAGTAGTGTAGTCATGGTACAAATTATTCATGCTTTTGATCCGTCTTTG
TCTTTGTCTTTGTCTTTGTCTTTGTCTTTATTCTCTCGTTCTCTTCCTCT
TTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCT
CTCTCTGTTTCTGTCTCTGTCTTGCTCTCCCCCTCTCTCTCTGTGCTTGT
GTGTGATTTTGCGTTCTTTCTCTTTGTGTGTGCTTTAAGTCATACAGACG
GTACTCGGACGAGGCGTCAAGATCAGCCAAGCAGGAAAGTCTAAAGCCGA
GGCCCAACAAACCCAAGCAGGTGAGCCGACCAATCCAGTATCCTGAAAAA
ACACCGTGCAAGTACAGTTATGCATTGTAACGGAGAGCTGCCGCACGCAC
CCATCTTACTCATCTGAAATAATTACACCGCCTTTATTTCTCGTTTTTTG
TATTTTTGATGTCGCCCACCGTCGTCGTGGGGATCGGCAGGGTGCGTCCG
GGCCGACACCCGAAACGCTAGCGGTGAACGCTAGCGACATAATCGCGAGT
GGTTCCGAGCCGGAGTTCGAGGTCGGGCACTATTCCACCGGGAAAACGAT
CACCCTGTGGGATGCGGGAGGAATGGCCCACGGGGGCAAGCACGGCAGAG
GCTTGTTCGGGCGCACGGTGAGTGCGTTGGTTCTCGTCTCGCATCAGATG
CATGCGACGACCAGAGGGAAAGAAAACGATCCAGATGTCCGTTAAAAAAT
GCTCTCCTGTTCGCAGATGTAAACGACGGTTGGTTGGTTTGATTTTTTAT
CATTGCATGAAGTGAAAACAATACTCGTATACGAAGTATATGTATATTTT
CTTCTAAGTATATGATGTGATTCATACGAACATTTACATGCGCAAGCGTA
ACCTTTTCACCGAGGCGTGCAAAAAAAGGCGAGCGGTTACGCCTGACCTA
CGTACACCTGCTTCGGAGCGGAGAATAGTACGTAAGGCAAATGCTGCATT
GCCACGCTGAGAAATCACAGCGAAATGCAGAATGGTCTTACCAGATATTG
GTACGTACTACATCGAGTACTTTTTTGTTTCGAGTGGGGCGGCGTACCTA
CCGGAGCAAGCCGCAAGGAATGTATTCGGCAGCAGTAGCAGGCAGTGTAC
ACGGGCTGCCAACGGAGAACCCACTCTATGGCTGTGCTACTATTACAGTG
CCCTCGGAGTGGACGCTGTTGCTTTGGAGAAGCACAGCAGCTCAAGAATC
GTGGGCCTCACATTGAGTGTTCAAGGAATGCCGTAATAGCGCCGTGAGGC
GTGCGGACGTATTAACAGCTTTTCAACGGCTTCCACCACGACAAAAATAT
TACTACGCACCCCGTGCAGAGCTAGTAATTTCGTTTCGAGCGATAGACCG
TATGTCTCCTGTCCCTCCTTCTCCGTCCTTTTCCATCTGCGCCAAAAACC
CAGTCGTTCATTTACCTTTCTCGGCGAAAACGCGAGACGCTCACACCCAC
CCTACTCGATTTTACCCAAACGAGCCTCGAACCCTGTGACAGTCCTCAGA
TATCTCTTGTACACCTTCGTCACGTGCAGTCCCTCAAATGCCTGCCACAC
AACCTCAACAAAGCGATGCGCATTGTGCCTCCCGCCTCCCGCCGCCGCCG
CCGCCGCCGCCGATGGCATTTTCGTACCCCAACCCTAACCCCCCCCCGGC
CCCCGCCCCGCCGGCGAACGGTGGTCGTGCACCCGGAAAACGGCGCCGTC
GCCGTTAACGCTGCGCAGTCGACGTTCACAGAACCCGGAGTCCATCCGTC
GTTTTTCCAAGAGGTTTGGCCAGACCCTGGCCCTCACCACAAGTCTCTCC
CCAGGGGGCTCAGTGACCTTGAGGCGGCTTCCCTCATGTTCCTCAAGAGG
AGAGTCCTCGAAAGGGCCCAAAAACAGCCCCTGCCCTCGGTGCGCGGGCT
GTGGCGGCTGCTCTGGTGCGTTGCGTGCTTTCTCTAAGTCTGTCTCAATT
TACGCTTGGATCACGTAATGTATGCGTCTGCTTCGTGTCTGACATCTGTC
TGCACTTTGTTTTGATTATTACACGTTTTGCTGTCTTGTGTCTTTGGGAC
GTTTGACCCCGTTTACTTTCCATCTTCTCTTTCAATGGAAAGCCAAAGTC
ACCTGGAGGAGGTGTAGACGCGAGGCCAGACATCAAAGCCCCTCGCTTGT
CCTCGATTCGAAAGGTTGTGTGTATGTCCTGCTTGCTTCGTGTGCTCTGC
ACTTCAGCCCCAAATATTGAAAGTTGCCCGTCCACATCGAAGTATAGCTA
TGCCTTATTCTTTAAGCAAACCCACTGGTGGTGGGCTACATTTCTGTGCG
CTTGTGTCGTTGCCACGTTTCTCCGTCGACGAAGGCCTCGAACATACCGA
GATGCCGTGGGGAAGATCGGCCAGAGGGAGTTTCGAGAGGGTGAGCCAGA
CGTGCATCACACCCATGTGGTTCAAGTAGTGTATCGTTCTACGACAGCTC
CCTTTCAACCTTTTTTTGCGCTGGCGTCCATCGCCGGTTTCGACCCAACT
CCAAGCCCTGAATCCCGAGGTCTGGCGTCTCTCGAGACCCAGACTTCGTG
TTTTGATGATCCCCGGCGTACATGTAATGGAGGCATTTGTTGGCAACAGT
CGTTGGTTTTTTCGGGGGGGCATCTCACGATCACAAAAGAGTGGCGCTGA
TTTGAAACAAGTTCCTCGACGAAAAAGTACCGTTTTTTGTTCATGTATGT
GTATTGTTTGCTGCCAATCGTCGTCGATGGTTGTCGCGGTGCTCATTGCG
TCTCCCAGAGGGCGTCCATAATCCCTACCGATCTCACCGAGATATGGATG
GGTCGACTCCCGTGGCCACGGGCAACGTCACGAAAAAAGGCATCGTAAAA
GCCAAGACACCACGACACGCGTAGCATTTTCTCGAGGATGATGCTGTGTG
ATTGCGTGCCGTCAAATCTTGGCTATTCGAAACGTCCCGTATGTGTGGGG
TGCATCTCAGCCAGGCGGGGTGACACAGGCGGAAGGTCGACACCATACTG
CACAGTGTTCGTCATCTCTTCATTTATTTTTGCATTCATTCATTTTTTTG
TTTCTCCTTCTTCATTTTCCTACTGCGGTGGGGTGCCTTGATGTTTGAAG
GGTACAGCTGAAATATTGACGAACGATCTCAAATGTCTGTTTGCGTGGGT
TGATTCACGTTGGATCGTGAATGTATGTTCGCCATTACCGGGGCCATACC
CGCCTCGTTGGTGCGTGGCCAACCCTGCCGATTGTGATGTGTACTCGCAT
GTGTTTTTTGCTTATGCATACTGTACCGTGATAAGATTTTCCCATGTGTG
TGCTGTGTGTTCTGACTGGAGTCCTGAAACCTAACCGCTATTACGCTTGC
AGCAATGGCGGCGTTCGAGGTTCCCGTTACGCAATGCGAGGTTTGGACCG
TGACGACCGCTTTCGACAACGACGGCAGCGGGCAGGTGAAATAAACGGAC
ATGGTTGTAACTCGGAAGGTGCCGACGAGGGTGGCCAAGGCCATATTCAA
TGTAAATCCGGACATGGCCTCAACCGATTACGGCCGATTGCGCTACAGTA
TTGATCCTACCACGACCGCCAACTCCAACATGGTCGCTGGATTTTTCAGC
ACGGGCTCAGATTCGGCGTCTTACGCCGATGTTCGATGAACGCTATCAAA
TCGTCATCTAGGAGACGATCACGAATATTTGCTGCCTTCTTGAGCCATCA
GAACACCACCGTGCAATGTTGCATCGAGTTGGTTTGAATCTACGCATGTA
CTCTGTAGGTCTGACGGAGCACCTGCTCCAAAATACAACAAACGGTGATG
TCAGATCTGTTTGGACAAGCTCATTCACTTTGTCCGTGTTGGAGGTTTGT
CCGAGGCTCGCCGCAACAGGGTGCGCGAACTATTCCGTCGCCTGGACTCC
ACCAACGCGGGAGAAGTAAGCCTGGGCCGCATCCTAGCGGCCTGCGACTT
CTCACGCCTGCCGGCGGTAACGAAGGGGTGAGGGTCGATGTGTGTCTGTC
GCAGGGAGAGCAAGCGTTTGACGAACAGTAGTACCTGAAGCATTACTTTG
TTCGGGGTCTGAGTGACATTTTTTGCTTGCTGTGGTGTGCACATTTTTTG
TGGTGGTGGTGCTGCTGCTGGATCGCGCTCTCCGAGCGCTCTTCTTGTTG
CTGTTGCTCTCCTCCCGTAAAAGTGAGCTCTCATCCGAACAGTCTACTGC
TGTGTAGCTCGAGGTATCACAGCAAAATCGCACTGAAGCGCTCCAGAAGG
GTTATGAAAAATTGAAGATTGACTTGCCAAGCAAGGCCAACAGCCGCGCT
GTTGTACATTCTCAAGAAAGAGCGTAAGAACAAGGCGTTGGGCAGAAAGG
GGGCTGGGGGGGGGGCGGGCGTCGGGAGGGGGTGCTCGACCGTGCACGCC
CGTAGTCACGATACCATAGACCCTCGCATCTCCCTGCATTGCCGGGATGG
AGCATGTATGATCGTTTATTTTAACAGACCATACAGAGATGTTGCTTGCA
CCAAGCGTGTTTCGAGGAGGCGTCGTGAGGCTTTCGGCGAGTCGCGCACA
AAAAGTGCACTACTGTACATCCTCGTATCATGTGTGCGCACATTGTTCCA
TGTGGATGACGATTACCTGGAATGACTTCGTAAGTTGTACACTAATCACT
TTCCAGACAGCCATGAGTATACATACTCGGAAAATGTTCGTGATCTTGCC
TTGACTGTTTGTCTTTAGCGACCGTTTATCTTTAGAATGCACTACTCTTA
CGCATGCATGATACGATGAGGCCCCCACTACGCTGGCGTGGAGTGGCAAA
TTCGGAACGAGGGGGAGCGGGGTGCTGGTTGAAATGTTTTTTTTTTTAAT
TTTGATAAACCTGCCAACTTGGGGTAGTTTTTTTTTGCTGCCAACGTTGG
CAGATTTAATAATTGTGCCAACGGTATGTCACTGATTTTGACGCCACCGT
CCTTTTCTCGTGACACGAACATTCAGTGGTCAAAGTAGGAGTTGAGACGG
ATTACTGCGGTCTTGGGCTGCCCTACTGGGAGCTTTTCATCGTGGACCAA
TAAAAAAAAAAGGCCACGTCACAGATGTTTTACCCCCTTTCACTCGGTCG
ACAATATAGCTCCCAGCAGGACAGCCCAAGGCCGTAGCAAACCACCCGTT
ACTTTGGCCACCGGATGCTCGTGCCACGAGTTAGGGGTCGACGCCTTCGA
AATTGGTGGCAAACAGCTTGCCGGGTTATAAAATCTGCCAACGTTGCAGC
GAAAAAACACACCTTGCCCACGTTGGCAGATTTATCATGACTGAATGTTT
TGAATGGCGTCGACGTTTTACCCAACTTCGTCTCGGTATTGCTGGCGATC
CACACCCTCCTCTTCTCCATTCACGCCATGTGTCTCACCTTGATATTTTC
GACGCAGGAAAACAGGGGAGGGGCAGGTGGCGGCGGCGTTCCAACAGCAC
TTCAACATCAACGGGGAAAGGTCAGGGTATAACATGCAGTAGTAGTAGTT
GCAGAAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTGCAGGAGA
AGTAGCAGGAGAAGTAGCAGTAGTAGGAGTAGTAGTAGTATGCAGCAGCT
GCGGATGCTGGCATTATTGTCGACGGTGGTGGGGTGGTGGTCACGGTGAA
CAGTATTTTTTCACGGCGTTCTTTCCCTCTCAAAAGTAGTGCCTACGACC
CCCCTCAAGTATGCCTTCGCCTCGCCCTCTCCTTCTGGACGGATGAATGT
AACGGTTCGTATGAATTTCGGGATAATCAAATGTAACGATTCAGTACACT
TTTGGGAAATATCGTGCGCATTCCAACCTCCGCCCGCAACGAAACACCAA
CTCCGAGCAGGGCGGGTGAAAAAGTGGACATGGTTTCCACAGAACGGTTT
CAGGAGGCGTTTCGGGACATCGGGGCAGCGTGTGTTGATACGGAGGAGAC
GTGCACGTGGGAGGCTGCCTGCCCTCGGCGGCACTCGGAGTGCAAGGAGG
GTGTGGATGTCGACACTGTTGGCAAGGATAAGGACAAGGACGAGGGTGAC
CTCCTGTTTGAGGCAGTGCTGTCTTCGTTGGGCGGGTCATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig79:599125..612066-

>mRNA_P-littoralis_Contig79.133.2 ID=mRNA_P-littoralis_Contig79.133.2|Name=mRNA_P-littoralis_Contig79.133.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1518bp|location=Sequence derived from alignment at P-littoralis_Contig79:599125..612066- (Pylaiella littoralis U1_48)
ATGTCGTCGTTGAGCTCGGCGATGTTTGCCGGCTACAACAAGTTTGACAA
TGCAAAAGTCCGCATTGGGTCGTGGCGTGAGGAGCTGGCCCTGAAAGAGC
TCACAGGAGTGACCCGCCTAGCCAATCCGCGGGACAAGGCCGTGTTCAAC
GCGACCGGCGTAAGGGTACTGTATCATGCCGACAAGCCGGGGGAGAAAGA
TCCTGGTGAGGGTAAGAGCGTGTCGGAGACCTCCTTTGTGCACCCTGAGA
AGGTTTCAACGACGAAGGATAGATCGGCGTACCGTGCGCCGGGCCCGCGT
TCGGTTCTGGCAAAGCAAAGAACAAGGCAATGCTCTTACTTACACTTACC
CGTGCATCCATTCAGGGCGATACTGGCATCGGAAGTAGCAGAGAGAGCAG
CCTTAGAAGTGGAGAAGAAAAATAAAGGGGACTTCGACACCACCTTCAAA
CAGTCATACAGACGGTACTCGGACGAGGCGTCAAGATCAGCCAAGCAGGA
AAGTCTAAAGCCGAGGCCCAACAAACCCAAGCAGGGTGCGTCCGGGCCGA
CACCCGAAACGCTAGCGGTGAACGCTAGCGACATAATCGCGAGTGGTTCC
GAGCCGGAGTTCGAGGTCGGGCACTATTCCACCGGGAAAACGATCACCCT
GTGGGATGCGGGAGGAATGGCCCACGGGGGCAAGCACGGCAGAGGCTTGT
TCGGGCGCACGTCGACGTTCACAGAACCCGGAGTCCATCCGTCGTTTTTC
CAAGAGGTTTGGCCAGACCCTGGCCCTCACCACAAGTCTCTCCCCAGGGG
GCTCAGTGACCTTGAGGCGGCTTCCCTCATGTTCCTCAAGAGGAGAGTCC
TCGAAAGGGCCCAAAAACAGCCCCTGCCCTCGGTGCGCGGGCTGTGGCGG
CTGCTCTGGCCTCGAACATACCGAGATGCCGTGGGGAAGATCGGCCAGAG
GGAGTTTCGAGAGGCAATGGCGGCGTTCGAGGTTCCCGTTACGCAATGCG
AGGTTTGGACCGTGACGACCGCTTTCGACAACGACGGCAGCGGGCAGATC
TGTTTGGACAAGCTCATTCACTTTGTCCGTGTTGGAGGTTTGTCCGAGGC
TCGCCGCAACAGGGTGCGCGAACTATTCCGTCGCCTGGACTCCACCAACG
CGGGAGAAGTAAGCCTGGGCCGCATCCTAGCGGCCTGCGACTTCTCACGC
CTGCCGGCGGTAACGAAGGGGAAAACAGGGGAGGGGCAGGTGGCGGCGGC
GTTCCAACAGCACTTCAACATCAACGGGGAAAGCAGGGCGGGTGAAAAAG
TGGACATGGTTTCCACAGAACGGTTTCAGGAGGCGTTTCGGGACATCGGG
GCAGCGTGTGTTGATACGGAGGAGACGTGCACGTGGGAGGCTGCCTGCCC
TCGGCGGCACTCGGAGTGCAAGGAGGGTGTGGATGTCGACACTGTTGGCA
AGGATAAGGACAAGGACGAGGGTGACCTCCTGTTTGAGGCAGTGCTGTCT
TCGTTGGGCGGGTCATGA
back to top