mRNA_P-littoralis_Contig79.104.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.104.1
Unique NamemRNA_P-littoralis_Contig79.104.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.980e-71
Identity = 111/141 (78.72%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
            RRRLDRYCT PEAV+ L++AVAI+GCVLDMCGGPEDAVAQ F  TCEVLTNDVSS          S+LSFRD+F KAN GK+PDWVVTSPPYKGAVGFVKAALAVATKG ALKLP SFLEPCADRGGWL + PPAVC+FLR
Sbjct:  123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLR 263          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.200e-57
Identity = 92/145 (63.45%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS---------------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFL 390
            RR LDRYCTSPEAV+AL  AV + GCVLDMCGGP DA+A R G TC+V+TND+S+               S+ SF  DFL A  G+RPDWV+TSPPYKGA+ +VK+AL++A KG ALKLP SFLEPCADRGGWL   PPAVCVF 
Sbjct:   77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.420e-54
Identity = 90/141 (63.83%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
            RR LDRYCTSPEA+DA   AV I+GCVLDMCGGP DAVA R   TCE+LTNDVSS          S+ SF +DFL A SGKRP+WV TSPPY  A+ FVKAA+++ATKG   K+   FLEPCAD GGWL   PP++CVFLR
Sbjct:   24 RRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLR 164          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.280e-54
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVS----------SSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFL 390
            RR +DRYCTSP  ++AL   V+ISGCVLDMCGG +DAVA R   TC+VLTNDV           +S  SF DDFL A+ G++PDW+VTSPPYKGA+ FVKAAL VA KG ALKLP SFLEPCADR GWL   PPA+C+ +
Sbjct:   65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMM 204          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.480e-47
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSSSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKL 312
            RRRLDRYCTSP AVDALR AVAI+GCVLDMCGGPEDAVAQ FGGTC     ++ +S++ F D+F+K N GK+PDWVVTSPPYKG+VGFV AALAVATKG ALKL
Sbjct:   42 RRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTC----TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKL 141          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.750e-44
Identity = 85/147 (57.82%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSSSVLS----------------FRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
            RR LDRYCTS  AV+AL DAV +SG VLDMCGGP+DAVA++   TCEV+TNDVSS + S                F  +FL     ++P+ VV SPPYKGAV FVKAAL VA  G ALK   SFLEPC DR  WL   PP VCVFLR
Sbjct:  113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLR 259          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.500e-43
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   88 MCGGPEDAVAQRFGGTCEVLTNDVSSSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
            MCGGPEDAVA  FGGTCEVLTNDVSS +         A+ GK+PDWVVTSPPYKGAVGFVKA LAVA KG AL+LP SF +PCADRG WL + PP +C FLR
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRL-------SPAHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLR 95          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.290e-42
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   88 MCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLPPSFLEPCADRGGWLAETPPAVCVFLR 393
            MCGGP DAVA R   TCE+LTNDVSS          S+  F +DFL A SGKRP+WVVTSPPY  A+ FVKAA+++ATKG A K+P  FLEPCADRGGWL   PP+VCVFLR
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLR 112          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.350e-41
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGAALKLP 315
            RR LDRYCTSPEAV+AL  AV+I+GC+LD+CGGP DAVA R G TCEVLTNDVSS          S+ SF DDF  A+SGKRPDWVVTSP YK A+ FVKAA+++AT+G  +  P
Sbjct:   90 RRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204          
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.110e-37
Identity = 68/91 (74.73%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLTNDVSS----------SVLSFRDDFLKANSGKRPDWVVTSPP 243
            RRRLDRYCTSP AVDALRDAV I GCVLDMCGGPE AVA  FGGTCEVLTNDV S          S+LSF  DFLKA+ GK+PDWVVTSPP
Sbjct:   57 RRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK3_9PHAE1.980e-7178.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI1.200e-5763.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Y0_ECTSI1.420e-5463.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K049_9PHAE2.280e-5462.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE1.480e-4775.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE1.750e-4457.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE3.500e-4370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI3.290e-4264.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE2.350e-4164.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZK3_9PHAE1.110e-3774.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:439309..439880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1524882.A0A076GD02_9CAUD
Model size393
Max annot lvl10699|Siphoviridae
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.32e-07
EggNOG OGs4QDWY@10239|Viruses,4QRR8@28883|Caudovirales,4QMIM@10699|Siphoviridae
Descriptionmethyltransferase activity
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791618.333722-CDS-P-littoralis_Contig79:439308..4394751680791618.333722-CDS-P-littoralis_Contig79:439308..439475Pylaiella littoralis U1_48CDSP-littoralis_Contig79 439309..439475 +
1680791618.3616598-CDS-P-littoralis_Contig79:439654..4398801680791618.3616598-CDS-P-littoralis_Contig79:439654..439880Pylaiella littoralis U1_48CDSP-littoralis_Contig79 439655..439880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.104.1prot_P-littoralis_Contig79.104.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 439309..439880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.104.1

>prot_P-littoralis_Contig79.104.1 ID=prot_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
RRRLDRYCTSPEAVDALRDAVAISGCVLDMCGGPEDAVAQRFGGTCEVLT
NDVSSSVLSFRDDFLKANSGKRPDWVVTSPPYKGAVGFVKAALAVATKGA
ALKLPPSFLEPCADRGGWLAETPPAVCVFLR
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mRNA from alignment at P-littoralis_Contig79:439309..439880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.104.1 ID=mRNA_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=572bp|location=Sequence derived from alignment at P-littoralis_Contig79:439309..439880+ (Pylaiella littoralis U1_48)
CGCCGGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACGCCCT GCGAGATGCTGTTGCTATATCGGGTTGTGTGTTGGACATGTGCGGCGGAC CTGAAGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCTCACG AACGACGTGAGCTCGAGGTAAGGAGGTCCATTCAGGAGAAAAGTCGTTTT CGAATATTTGAATATTTGTTTCCAGCAATTCTGTAGATAAGTATTTCCAA CGCAATGAAAACAAATGGCGTATTCACATTTCCTCTGTTGGTGTTTCTTT CCGTCCGCCACAAAAGGCTATCGCCGGATACCAACCTGGACGCGAGCGTG CTTTCTTTTCGGGATGATTTTCTCAAAGCCAACTCCGGAAAGCGACCAGA CTGGGTCGTCACGAGCCCTCCGTACAAGGGTGCTGTGGGGTTTGTCAAGG CGGCGTTGGCGGTAGCGACGAAAGGCGCGGCGCTGAAATTGCCGCCATCG TTCCTAGAACCCTGTGCCGACCGTGGTGGTTGGCTTGCGGAAACCCCCCC GGCTGTGTGCGTGTTTTTACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:439309..439880+

>mRNA_P-littoralis_Contig79.104.1 ID=mRNA_P-littoralis_Contig79.104.1|Name=mRNA_P-littoralis_Contig79.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig79:439309..439880+ (Pylaiella littoralis U1_48)
CGCCGGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACGCCCT
GCGAGATGCTGTTGCTATATCGGGTTGTGTGTTGGACATGTGCGGCGGAC
CTGAAGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCTCACG
AACGACGTGAGCTCGAGCGTGCTTTCTTTTCGGGATGATTTTCTCAAAGC
CAACTCCGGAAAGCGACCAGACTGGGTCGTCACGAGCCCTCCGTACAAGG
GTGCTGTGGGGTTTGTCAAGGCGGCGTTGGCGGTAGCGACGAAAGGCGCG
GCGCTGAAATTGCCGCCATCGTTCCTAGAACCCTGTGCCGACCGTGGTGG
TTGGCTTGCGGAAACCCCCCCGGCTGTGTGCGTGTTTTTACGG
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