mRNA_P-littoralis_Contig79.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.88.1
Unique NamemRNA_P-littoralis_Contig79.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig79.88.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.850e-10
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = -3 
Query:    1 DRSGDP-RQPHRLWG*SPMENKKQSMIYWTLIG*SDAPSDYRKLRSAHHFFLLRCIGWKKRERTDRPL 201
            DR G P R   RL     +E      + W L      P++YRKLRSAHHFFLLRCIGWKKRER DRPL
Sbjct:  165 DRPGGPLRLKVRLLQAEVVETLLYGCVTWNL-----KPAEYRKLRSAHHFFLLRCIGWKKRERKDRPL 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE3.850e-1055.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:337612..342309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size935
Hectar predicted targeting categorysignal peptide
Exons3
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791617.554048-UTR-P-littoralis_Contig79:337611..3378201680791617.554048-UTR-P-littoralis_Contig79:337611..337820Pylaiella littoralis U1_48UTRP-littoralis_Contig79 337612..337820 -
1680791617.5649707-UTR-P-littoralis_Contig79:340827..3408391680791617.5649707-UTR-P-littoralis_Contig79:340827..340839Pylaiella littoralis U1_48UTRP-littoralis_Contig79 340828..340839 -
1680791617.599913-UTR-P-littoralis_Contig79:342138..3423091680791617.599913-UTR-P-littoralis_Contig79:342138..342309Pylaiella littoralis U1_48UTRP-littoralis_Contig79 342139..342309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791617.5757244-CDS-P-littoralis_Contig79:340839..3413211680791617.5757244-CDS-P-littoralis_Contig79:340839..341321Pylaiella littoralis U1_48CDSP-littoralis_Contig79 340840..341321 -
1680791617.5866606-CDS-P-littoralis_Contig79:342077..3421381680791617.5866606-CDS-P-littoralis_Contig79:342077..342138Pylaiella littoralis U1_48CDSP-littoralis_Contig79 342078..342138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.88.1prot_P-littoralis_Contig79.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 340840..342138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.88.1

>prot_P-littoralis_Contig79.88.1 ID=prot_P-littoralis_Contig79.88.1|Name=mRNA_P-littoralis_Contig79.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
MRLPGVTGAIWASFIIAAPKASGARPVLDTCTPLDIVSLLGAQPNQDGWR
TSASVEQDLDLDDNAVSSSLRNACIGVKGKQLRKDLWDRLGKKGVYRRLG
RQRPHRVWWLAFCGEGNPAPEISPPRDFDERVRMGLLVAEEDAVDEDRSA
AAQEKETYASGGISRARDEEGCCCWGGSDR*
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mRNA from alignment at P-littoralis_Contig79:337612..342309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.88.1 ID=mRNA_P-littoralis_Contig79.88.1|Name=mRNA_P-littoralis_Contig79.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4698bp|location=Sequence derived from alignment at P-littoralis_Contig79:337612..342309- (Pylaiella littoralis U1_48)
GAGGGGTCGGTCTGTTCTCTCCCTCTTTTTCCATCCGATGCAGCGAAGGA
GGAAGAAGTGGTGGGCTGACCGAAGCTTGCGGTAATCTGATGGGGCGTCA
CTTCAGCCAATGAGTGTCCAATATATCATAGATTGTTTTTTATTTTCCAT
CGGAGATCATCCCCACAAGCGATGCGGCTGCCTGGGGTCACCGGAGCGAT
CTGGGCCAGCTTCATCATCGCTGCCCCAAAAGGTACGACGTTCGACTATG
TTGTAGATTGTGTTGAAAGATGACGACGCTGCAAGTTTCGTGTCTTTTGG
TGCGCTGTGTGTCAAAGTCTGGCAGCGACGTGTTTTGGGCCCCGACCACC
TACTACGTTCAACATCAGCAGGAGGCCGCTAATAGCGCCCACTCCGGCGT
CCGCACCCCACAGGTCGAAACCTCAATAGGTTTTTCAAGTATGTCCATTG
CCATGTGTTCGAGATGGGCTAGGAACTGTGCCCGACCTCAATCAGTCCAC
TACAAGTTGAGAAATGTTCTAAAATGTGTTAAAATAACAGTTTGTTCGTG
GATCAGCTGGAGGGGACAATAATGACCCGAGGCACAGCAGCCAGTGCCCC
ACAAGGCAGTAAGCACTTCCGGAGGACTGTGAAAGTTTCCCCCGTCTTTA
GTCACAGTACGTGGCCTGCGAATGACGGTGGAATTGATGTTGTACATGGA
CTACAGCAGAAGAAACCCGTTTTTTATTGTATGGGTCGTGGTTGAAGGTC
AGCTCCCACCTTGCCGTGACCCCATGACAAGGTCTCTATCGTGCATAGTG
CTGTTCTCTTTGGCTTCGATATGTATCAGGGCGTTGGAGCACTTGAAAGA
TAGCTGAGACCAAGGAGAAGCACAAACAAATAAACCCTGTAGTCTAGAGG
TTACGAATTGGGCACAGTTCAAAACGTCGATACCGCAAAGCCTAAAATGC
CCCTAAAACGCTCTTATTGTACCGTTTTTACTATGCAGCCAGCGGAGCGA
GGCCCGTCTTGGACACCTGCACACCACTGGACATCGTCTCTTTGTTGGGC
GCCCAACCAAACCAGGATGGTTGGCGTACGTCCGCAAGCGTTGAGCAAGA
TCTAGACCTTGATGACAACGCCGTATCTAGCTCACTACGCAATGCATGTA
TCGGAGTAAAAGGAAAACAACTCAGGAAGGACCTGTGGGACAGACTAGGG
AAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTG
GTGGCTTGCGTTTTGTGGAGAAGGGAACCCTGCCCCAGAAATTAGCCCTC
CACGGGACTTCGACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGAAGAG
GATGCCGTAGATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTA
CGCGTCTGGCGGTATCTCCAGAGCACGAGATGAGGAAGGCTGCTGCTGCT
GGGGAGGAAGTGACCGATAAAGTTCGCCAAAGGTGCGGTCCTTCGAAATG
GTCCATTTTCTGTGCATGATTGATAAGTCTGTCCTGCGTTGACAATGGTA
CGTTGATGTTACGCTTTCGTGTCCGTAATTTGGTTAATTGCAGAGCTTTC
CCTCTAAGGGTCTGTCTAATCATTGCGGATTTTTGCCAAGAAACAGAGAA
CCATTCCTGGTAACCTAAAATCTCCGACAATATGCAGGCGTTCTTCTCGG
TTTCCCTGAAATGAGCACTGCCCAAAAAATCCCGAAATACTCATTTCAGG
GTTCCCGGAAATTTGAATCCGCATTTCGGGCAGACGTGCCTCCAAGTTCG
GGCACGCCTGCATAGGTGCTCAGTTCACACGAGCTGTCGTATGCACGCCA
TCCCCAGGCCACACAACCACACAGTGAGTTCACGGGGTCGCCCTAAGGCC
ATGGCTGATGGGAGGAAGCGTCTTCGGATGCTTTGCTTGGCGTCTAGAGT
TCGGATGCGGCGTGACTGCTGTGGGCGGGAAGAAGCTCGGGCTTCAGGAT
AAAAAACAGAGAAAAGACATTTTGAAAACAAATACTCGCCCAATCGTTTA
GAACAGAGCGAAACTCAGTTCATGTTTCCCGGGAATGGTTCTCTGTTTCC
CGGCAAAAATCCGGAATGATTAGACAGGGCCTAATAGCAAGTACTTGTAG
CGAGAGACAGCGAGAGACATTGCCGTATGAGAGGGTTACTAAAATACGAC
ACCTGCTGAAGCGACTTAAAACCACAGATACTCCACACCGAAGAGAGCAT
CACCATCAAACGATACGTTTACTCTCGATGCGTTTCCAACACGCCCTCTG
CGGCACCTACACATGTAATGAATCGTGCTTTGAAAATCGGTCCAGGGGGG
TCCGTCGTATCTTACGGCACCCACGGAACACACGCGTCACGCTGCCACAC
ACACCACGCTGTAGAGCTGTATTCTGCTGTACAGCTGTATTCAACTGTAC
TGCTGTTGCTTTACTGCTGCTGCTGTACTGCTGCTGCTGCTGCGCTGCTT
ATTCTGCTTTACTGCTGCTGCTGCTGCTACTTCGCTGCTGTTGCTGCTGT
ACTGCTGCTGCTGGGATGTGTAATGATGTATCATCTCGAAGTATCATACT
CTCACTCGAGACGGAAAGCATAGCAGTGGCATCGTTACAACAACACAAGA
ACAGAAGTACAGCAAGATAAGAGCGTTGTGTGTGCGGCAGGCTGCGGCGT
GATGTGTAAATGCTGTGATGCGATACTTTAACACGAAAACAGGTCATATT
ATCATCACCTACAGGCGTCAACAACAGTAGTACAGCCGACCGTGGGAACG
GACTGTAGACATGCTCGTAATGCTGGTGTGGTGTCGCTGGCGTAGGGGTG
AAAGGCTCGGGGGAAGTAGCAGCCAGGGCTGATAATGTCGTGAGGGAAGC
AGCGGCAGGTGGGCGGACTGCTGCTGCCGTTGAGCGTGCTGCCAAAGGCA
AACAACCTGCAAGGGGTGGGAAGCTTCCAAAGGAGTGAGTCCGTGTGACC
TTTTTGTTTGACTCTTTGTGCGCGGGCCGTCACACATTGTAACCCTAGAT
GGATGTGACTGTACACCGTTTTTTGTTGTTGGATAGAGGACAGATAAAAC
TACACATTTGTGGCGTTGTTTTTTCGTTGTTGTGAATAGACACAATGACA
TTTTTGTGTTATTTTGCTCTTGTGGGTAGATACAATAGCACCTTTCTTTT
TTTGTTTATTGTACAGTAGCGGCTACGGTTTAACGGAAAATGTTTAAGAG
AAAGTACCGATTTAAGAGAGTAAAACGGCTTGGCACGCCCGAAATCGATT
TAAGAGAAAATGTAGCATATTTCTGAGATTTTCTCTTAAATCGAGCTTCT
GGAGGCCACGTCACATACAGTAGCGGCTACGGTTTAAGAGAGGGTCGGCA
TATGTTGGTGGGATGATGTAGGGTTGTGGGTGTTGGGCGTTGGGTGCAAG
GGATGGGAGGGGTATTCAGTGGGTGAGAGGGTGTTTTTTTTCTAGCAGCC
TGGTGCATCCTTGGTCCCGTGTTGCAGTTCTCTAGAAGAGGTGCGAGTAT
GCGGCAAACCTATCACTGACAAAACGAAATATGTATAGATATGTGTACAG
TATCCACGCGCACTAGTGTGTCGCACTACAAAGGTACAGCAGTGTACCAC
GTACTTCGGTCTTGAAGTGCTCGCCATCCGACAGATGAAGCGGCGTGTGG
AGCGAACCGAAGGTGCTCTGACGCTAGCTGCGCAATGTAACATTAATGAT
ACGCTCTCTTCATGACCATTTTAGGCATTACTAGTCTAGCTGGGACGTGA
GAGTCCCTGTTTCACGACCTTCAGTTTTGGCTATGGTATAAGAGAATATT
CTCTTAAAGTGAGCTACCGTTTAAGAGAATACTCTGTTATACCGTAGCCA
AAACGATATAACAGAAAGCACGATTTAAGAGAATAACACTGGGTTGTCCC
GACCCTCTCTTAAACCGTAGCCGCTACTGTAGTGGATAGATAAAATCACA
TCGTTCTTGTACTGATTTTGTTTAGAAGATGGGCAAAATAGTACCGTTCA
GTTTTTTTATCATTTGCGATACAGTAGATAAAATCACCCCGTTCATATAA
TGTTTGTTTTGTTGGAGTGGATAGACAAAATCACATCGTGCTTGTTTTTG
TTTACTTTTTTTGTGGCGGATGGAACAAATCGCATGTTTTTTTTGTTATT
GTGTGATCACACTGTGCTTGTACTAATTTTGTTTTTGGTATTGTGTTTTC
ACACTGCTTGTATTTTTTTTAGGGTCAGGAAAGAACCAATCACACTTTTT
TTTTCATTTTGTAGCGCGTAGATAAAATCCCGTCGTTACAACACCGACGT
TCTTGTACTATTTTTTAAAGTGCAAACATCACATGTCCATGAAACCATAC
CCATCTTGTATTGTACATCGTTTCTTTACTTCATGGACATAATCACCCTG
CTGTTCTTGTACTTTTTCTTTCAACGTCGGCTGCGACAGATGGTAGGCGG
AGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGGTAAA
CAGCGGTACACCAAACGCCACTGGCAAGCCAGAAACACCGCCGTCATCGC
TTGCTGCCACGCCAAAAACGTCGACTGCGCCCAATGGTAGGAAGAGGAAA
AGGAAGGGAGCGGACCCAGCAGCGGCACCAATCATTGAGGCAGACAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:337612..342309-

>mRNA_P-littoralis_Contig79.88.1 ID=mRNA_P-littoralis_Contig79.88.1|Name=mRNA_P-littoralis_Contig79.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig79:337612..342309- (Pylaiella littoralis U1_48)
ATGCGGCTGCCTGGGGTCACCGGAGCGATCTGGGCCAGCTTCATCATCGC
TGCCCCAAAAGCCAGCGGAGCGAGGCCCGTCTTGGACACCTGCACACCAC
TGGACATCGTCTCTTTGTTGGGCGCCCAACCAAACCAGGATGGTTGGCGT
ACGTCCGCAAGCGTTGAGCAAGATCTAGACCTTGATGACAACGCCGTATC
TAGCTCACTACGCAATGCATGTATCGGAGTAAAAGGAAAACAACTCAGGA
AGGACCTGTGGGACAGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGGT
AGACAGAGACCACATAGGGTTTGGTGGCTTGCGTTTTGTGGAGAAGGGAA
CCCTGCCCCAGAAATTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGA
TGGGATTGCTGGTTGCTGAAGAGGATGCCGTAGATGAGGATCGCAGTGCC
GCTGCTCAGGAGAAGGAGACGTACGCGTCTGGCGGTATCTCCAGAGCACG
AGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGATAA
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