mRNA_P-littoralis_Contig12.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.77.1
Unique NamemRNA_P-littoralis_Contig12.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:363282..368318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size285
Hectar predicted targeting categoryother localisation
Exons3
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.276969-UTR-P-littoralis_Contig12:363281..3632821680789504.276969-UTR-P-littoralis_Contig12:363281..363282Pylaiella littoralis U1_48UTRP-littoralis_Contig12 363282..363282 -
1680789504.3069654-UTR-P-littoralis_Contig12:368106..3681171680789504.3069654-UTR-P-littoralis_Contig12:368106..368117Pylaiella littoralis U1_48UTRP-littoralis_Contig12 368107..368117 -
1680789504.315054-UTR-P-littoralis_Contig12:368270..3683181680789504.315054-UTR-P-littoralis_Contig12:368270..368318Pylaiella littoralis U1_48UTRP-littoralis_Contig12 368271..368318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.2860067-CDS-P-littoralis_Contig12:363282..3633611680789504.2860067-CDS-P-littoralis_Contig12:363282..363361Pylaiella littoralis U1_48CDSP-littoralis_Contig12 363283..363361 -
1680789504.2977479-CDS-P-littoralis_Contig12:367960..3681061680789504.2977479-CDS-P-littoralis_Contig12:367960..368106Pylaiella littoralis U1_48CDSP-littoralis_Contig12 367961..368106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.77.1prot_P-littoralis_Contig12.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 363283..368106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.77.1

>prot_P-littoralis_Contig12.77.1 ID=prot_P-littoralis_Contig12.77.1|Name=mRNA_P-littoralis_Contig12.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MLSPTMRPLEPRSARTTSDPRCLAEAIVVCATRNLHDLLLLLLGGCYRCG
AFCFFSPFFEPAATSPPPGRQLGQ*
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mRNA from alignment at P-littoralis_Contig12:363282..368318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.77.1 ID=mRNA_P-littoralis_Contig12.77.1|Name=mRNA_P-littoralis_Contig12.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5037bp|location=Sequence derived from alignment at P-littoralis_Contig12:363282..368318- (Pylaiella littoralis U1_48)
CTCGTTGTACTGAATTGGAATATTTCCATTTAGTTTTGCAAAACGCATGT
ATGTGGTACAAAATATGCGCCAACCGCGACAGACAAACAACAACTTCTCA
ACCCCCTCCACGTCCACCCCGCGTTTAATTTGACGGTCGTTGAGCTTATT
ATCTGTGTATCCATCCTGAGCTTGCTTCGTCCCTTCCTCCCCCCGGTGCA
GATGTAATTCCAATGTTGTCGCCTACTATGCGGCCGCTGGAGCCACGTTC
GGCGCGGACAACATCGGACCCGCGGTGCCTTGCTGAGGCGATTGTGGTGT
GCGCAACACGCAACTTGCACGACCTCCTCCTGCTACTTTTAGGGGGTTGT
TACCGGTGGCGGGTTCCGCGCTAAAGACATATTTTTTTGGGGGGGGGGCG
GTAAGTTATCATCCCCCCCCTAGTTAAGCTTTTTTTTTGCTTACTATACC
GCCCATGTCATAATGATGATGCTTCAAGGTGTTGAAAAATTTAATGTGAT
GTGTAACACCCGGGTTTCAAAGCGTTTTATTCCTCTCGGTAAAGAAATAT
GCAAACATGCAGCACCAGGGGATGGTTACAAAAAATCCCCGGATTTCAAA
CGTTCGCCGAACGACATGAAATTTTCAGGATAGGGTCATTTTTGGGCGGT
GATCACGAATATGCCATCAGAACTTCCCAAATAAAAAAAGATGTGGAGTT
ACAGCGGCATACATATGATTGATACTTGGCGGTTTAGTTTCATGACCGGC
GTCCATAAAAATCATCACATTTACAAAATATTACAAGCCTGCACGTACGA
GCGTTACGACCGCACGCAAAAAAACACACAGTTGAACCAGATAAGATCGC
TCGCCTCTCGCTCCCTCCCTCTAAGCACTACTGCAGTGGCCCTCCTCGAA
CTGCGTACCAGCAACTCTTTTCATGACCGAGACTTTCTGTCTACCATCGA
ACTCGATTTTGGCCGTTTTTTTGCCGTTGTACAACCCCGTATCCGGGTCA
ACGGTCTTCGGATCCACCCCAGTATCCATGACAACCCTTTCCTCCACTGT
TCCTTCTTTCAACGTTGGAACAAGGCGCGGGTACGTCGCATTGATGTAGC
ACTCATCGTAATGACGAACACGGCAGGCTGAGCAAAAACACGATGCTGAA
CGGGTGAAAAGTTTGTGCAGGAGAACAACCTTCCTCACACCAACCATTTC
ATCGGGGGGAACCTCCGAATCAGACTCGCGCCCCTCTGCTTCCTCTCGAG
GCTCGTCCTCTTCGCCTCCAGACGTGTCCTGTTCACCTTCAGACGATCGG
TACTCCTCCTCCTCCTCCTGCTCATCGTCCTCCCCCTCCTCCTCGTCTTC
TTCAGACGTCTCTTCCTCGGAATCCATGGCCTCCTCGGTCTTCCTTCTCT
TCCTCCTGCCGCGCCTGACGCCGACAGGCGCACCCTCCCGTCACTACTTC
CGGATTCATTGGCCTTGCTAGTTTTCCTTCTTTTTCTCATGCCCCGCCTG
ATACCCGCAGAAGTCCCCCCCTCCTTCCTCTTGCTCTTTCTCTTCTTCCT
CCTCGTCGGCACTCATTGCCCTCGCGCTCTTCCTCCGCACTCTGGTGCTA
CGCCTCTGAACCCCAAGGGCACCCTCACCCCCCCCCTTCCCCCCTTGTCC
GCTCCGAACTTGGTATTTCCCACCACCACCACCACCTTCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCGCTAACGTGGCCGCCCCCGCTGGCAAAT
ACTCCCGTGCTGTCTTTACGCTGAGCCCCGTCCCCTCCACCTCCCCAGGG
TTCACTCCCGACGCCAACGTCAAATCGTTCTCCATGTCCGCAGTCGTCGT
GGACGCGTTGAAACTGGTCGAGTCGGCTCCGACGAAAAAGTACATGGACT
GAGTACCCTTGATACCCTCCAGGACGTCCTGCGGCCGATAGATCTCTCCA
ACCTTGATGAGCTTGACGTGCATACGTAGGACACGATACGGAGTCCACTT
CGCGAAGAAGCTCGAAAGGTCCTGTTCCCCGACTTTGCTAAAAAACTCCG
TCAAGAACGTCACCACCCCTTCAGCGCCGGTGACGGGCTTTCCATGGTCC
TCGGAGTTGCGCATGGCGTTCTTCGCCACACCGCCATAGCCATCGTGACA
CCCTTTGAAGTGAGAGGTCACCGCAAAGTGATGCTCCGTTTTGAAGCCGA
TCTGCGCCGGGGAGGCCGACACGAAACGGAACTCGCGCTTGCCCTTGTAT
TGCTTGGCACAGCCGTCCGTGAAGATGTACATGCGGGGCATCCGGGTCTC
CTCCCGAGCGGCGGCAGTCGCTGCCCGTCCGTCGCCAACCAAGTAATAGT
CGGCGATCTGTGTCATCGCATGGCGGTGGAAGTCGAAATCGTGCTGAGGA
TCCTCCGAAGCAAAGATCCATGTCTCGGTCTGATGTACCCTGCCGCCCCT
TCCCACAGCTGCGGACTAAAATGGACGACGGCCACCATAAGGGTGGTTTG
GTCGTACCTCTCACACGTACCAGACTGCCGGGGCTGGTGGGTGTACTTCT
CGATGAAATCCGTCTCGATGACGATGTCGCCGTCTTCGAAGGTCTCCAAA
CAGGTGGTGTGGCAAGCTCTCTGCCACTTGGCCTTCGAGTGATGGGCCAT
GTAGAGCTTGGTGTGCTTCTTGAACTCCGCCCAAAGTTCACTAAGCTTAC
CCTCCTCCTCCACTTGCTGGTTTTTTAGCGTCTTTTTCTTGCCCTCCTTC
CCAGTCCTCTCCACGTCCACAAAGCGCTTCCATCGTACCACTTGGTCGGA
GTTCTCCAGTGCGCCGCAAGGAGGAATTCCTCCGTCCGGTCCAAACCCAC
ACTCGGTGCAGTCCAAGGAACTGCAATCCGGCTTCCGCCCCATGCATCCT
CTGTCGTCATGCGGGTCCCCTTGCCGCAGGTCTACCTTCGGACAGCAGAG
TGCATCCGAAAAAGTCCCCAAGTGCGTCCAAATCGCTTTCCACTCCTTGG
CTGAGTCAGCGGAGCTGCACCATCGACAGCTGCATGTCTCGCGACCCTCC
ACGTTTACGCCATGCAGTGCCTCGAGATACATCGCTTGCTGCGTGTGAAT
CTTGCAGCAGCACTGTTCTCGTTTCGGCAGAACCAAGCATTTGCACCTCG
TCGACAGAAACAGAGTGCGCCTAGGGTCCTCTAAATCCTCCCCTTTTCAG
ATTTCCAGATCGCTTTGAAGCTGATGAATCTTTCCCACTTGAGAAACTTC
TTGTACACTGCTTCTCCCCCACCTGACTCCGTAAGCTGCCGACGAGGGTG
AGTGGGAGCACCTTGCTTCTTGGACTCCTTGTACATGTCCCTGTTGGCCG
AGTTGCCTGTTGCGCGCGACACATCATCTGTATGCCAGAACTGCTTCATG
AGCAGCACCAGTTCCCCCGGGGTGGCGTCGCTCCTTTTCGACCGGGGATG
AAACCAGTACTTGCCCTCGCCCGTGGCTGCTGCTGGACTGACGTCCGTCC
TCAGTGATTCCGCTCGTTGTTTTGCGTCCCCCATATGGTTAGGATCAACG
CCGAGAAGCTCGGCCTTGCGCCTGGCCGTGAGTCTTGACGGCCCATCACC
GTCGTGTGCAGCAGCCGTAAGAACCGTCTGATACACTTGCCTGCCCTCGT
TGGTTCGTGAATGTACTCTAGCGGCCCTGATCCCATTCTGGAAGCCGCCA
ATCAGCCCCCGCTGCTCTGCACACACCTCTTGAAGTTGGCTGGCGGCCGG
AACACCGAGAGAAGCAAGGTGCTCCAACAACCCATCCGTCGTCATGGCCT
TCATTGCTGGCAACGATGCTGGCAAAGCGTCTAACTCATCGTCCTCCCCG
ATGGCTGTGCAGTCACGCAGAACACAGTAGAGTATAACGCAGTGTGCGGT
GTGGGCAATGAAACAGTCAGCGGCAGCCGCGGTAAACATGAAGACATCAA
AATGTTTGTTGTTGAAGAGCAGCAGCACTCCGTGGACAGCCAACAACGGC
AGCGGTAGGGTAGAATTAAGCAAGGACACGAGCATTGTAGGCAGAGTTGG
CCGAAAGAAAGCAAGGTCGAGGCGTTGTATTCAAGTACGGGGAGGTGATA
AATCTAGTCTTCACACAGCAGTAGCGCCCAACACAAGTCTACGTGCAATA
TAGCAGTCACCAGCAGTACAACAGTAACGGCACAACACAAGCCTAGTACA
ATACAGCAGTACGTCGATTGTACACAAAGTGATACGTGCTGTTCTCTTAC
CTCTGGGTCGGCAGGCGTTCTGGATTTGCCTGCACGGGTCCTGTTCCCGA
CTGCGCCAGGGTGCAACTGCGCGACAACGGGGCAGGTCACACCCATCTTT
TCGCGTCTGGTTTGAGGGTCGCCATTCTTCACCGCGGCCCGGTTGTGCTT
GTCTCGCCTGTTCTGGAGGATGTCGTTTGCCTTTGTCAGGGCCAAGGTGC
TCAAAGCCTGCTCGTTCGCGTCACAGAAGGCGTACGTTCGTCCGGCTTCT
CTGGTTGGTCTCTGCGCATCGAAGACGGCGGTCCTGAGCTGCAGTCCTCT
TTCTTTGTGCGGTGTCCACGTTTGCTTCAAGTTGTACTGCTTTGCTCCAA
CCATCATGGTGCGCTCGCACATCCCTCGGGTCGCTACCGCCGGGCCCTGC
GGGCCACCCCCAGCAACACTCATCGAAACGCTTATGGACGTGCGAGTTTA
TCTCTGATTGCTGTTCTGAGTGGCTCTACCCCCTAAATCGGCCGAGCGGA
AGCGATTGCCGCGGAGAGCAAAAAAAAAAAGTTCGGGAATGCGGCGAAAA
AAAAAGTTCGACCCGAAGGGAAACGATTTTTTTTTTGCTCTCTTTTTTAA
ACGTCATTATTCAGCGTTAAAATGCGAACCACAAAACCAAAAAAAAAAAA
AAGATTTTCCTCCGACCTCCAGAACAAATATGTCTCTAGTGCGGAACCCG
CCCGGTGCGGGGCGTTTTGTTTTTTTTCCCCTTTTTTTGAGCCAGCCGCG
ACAAGCCCGCCCCCCGGTCGACAGCTCGGTCAATGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:363282..368318-

>mRNA_P-littoralis_Contig12.77.1 ID=mRNA_P-littoralis_Contig12.77.1|Name=mRNA_P-littoralis_Contig12.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig12:363282..368318- (Pylaiella littoralis U1_48)
ATGTTGTCGCCTACTATGCGGCCGCTGGAGCCACGTTCGGCGCGGACAAC
ATCGGACCCGCGGTGCCTTGCTGAGGCGATTGTGGTGTGCGCAACACGCA
ACTTGCACGACCTCCTCCTGCTACTTTTAGGGGGTTGTTACCGGTGCGGG
GCGTTTTGTTTTTTTTCCCCTTTTTTTGAGCCAGCCGCGACAAGCCCGCC
CCCCGGTCGACAGCTCGGTCAATGA
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