mRNA_P-littoralis_Contig79.80.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig79.80.1 vs. uniprot
Match: D7FID5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID5_ECTSI) HSP 1 Score: 329 bits (844), Expect = 6.130e-90 Identity = 428/1494 (28.65%), Postives = 577/1494 (38.62%), Query Frame = 1
Query: 1 AVCFSALYAEKNKNLEQSAKQLFVRVSDQHG-HRETAPRGIS-AKPAAPRSDGKMVAGTTSGTWCEELEMPILSDVDGVLFELLLLATPRHADDERDRSQSAKPVDSNSTSGSFPVQLDRLSVANNDDLHHERYAGTDVGVRENGAPGGGVVCPAHVDGLETDQDKNPRPCLLVGAVALLLSEVADVWREMESPLFGSAGGVAGTIKLVARVLRGDSDGKKRIESTAWDETPNTMSGAQN--PTAAVHQETCLTRTAVRVSASPSVEVGLATPFAVARPTSTEGGTAAACPP--RTGDGRDRRR-----VHREGSVSGSPCCGGHWGSSRRGRPGSGQWGCAEQLGLLHETAPRATILYRGLKLPFRWFRSATVREIDEALRETLGERNCDAAIPSPLLYDVGTGNRVDLKPSTPSGRNFFAFFENNVSPNNDWTGCTVGIGVGFRDAASPSALFGPRLSQTGEHNPCAPASRKAFPLRRGQQRRLHRYCRGVGAVDFERH-GQKAEQVCKVPGRNVSQNGSP--LRRSLSVGDIPSR-SHA---TSKGGSVTAARALLADKSLLDNQGWSGTSGVTLDTVVGKEALRHWQQHQQLQQSQQRQECVALERSIRQGKEHVK-------AKAVAFQLACLVLRRSHRTRLLATALWRWKAQAAAYELDQVRRGEQKHEQQQAVALLQGLRKDVASLTTSTYEELVAVSIDALERDFNASSVSGAGARSAADFPIDCLPREDLKGTLDSESVDLAVMALKTDIDGLKMLGAEKTECIKKRLREARDVQGSTATCRHGPEIVFATATATAAAIAGTPPPVSPRTSIK----------QGNPKFK---NGKNEDGSLGANIAETKAE-----QIDTRGGQVNRLIEE------------------------------------------QGQAVDGRA---WGRVRDREGDDDVLQGFLAHHAEELYSSFGKRLDRTCAR-RGCDADGGDERLAGLGTITAGSEWGLEVLWALFRAFSDYPPPSRSEVLRTRFSVSCAGANIPVKVNGVTDRPSPADSDFLTMDRGLDQYGTKRTTMSLLAFLGVCESAGLVIPAVRAASTLGGNDRGGGLVEGVVGSQREGGIPRRGRGDGGCFAKDGECKLLEVPREAVALLDPADAASIFARTMRRYGRCRTAAHHRARSASPGVRDGRNGEVRRDHRTXXXXXXXXXXXXXXXXGLCCRGDAGTHTDSQQQRQSENYHTRRQRQRNCPRSSRSSRENRSDPEEGLEFPQFVAAIEGVTELLTVGHDDSGVGGSDVVGSGSGGGKRGEGGGLKDDDGLSEESAGGIR--GEG---------------VVTMTPELARTCLVRVAQDLAAKELLARDRRARETLALLDPSLQSALEVNEEILHELFRHYGHKYRQHSGPTSRKHDHRCHRANHKESLGGPDGG---GGFASSGGDGG--GLERESHVATPGLRINGGQALVADFGLA-IRAEQLGAV 4146
A+ S+L ++L+ + + + +R+SDQHG HRET PR S P AP SDG+ A WCEEL+MPIL VD +LFE+ L+A P + + ++ + S GS P + DRL AN D HHE G+ G+ GG P G D ++ +P L+GAVALLLSEV WR MESPLF AGGVAG I++ A ++ + G E + A+ P +A+ + C T R+ A+ E P R + + C R G G R R +G P G G P + + GC ++G + E P+A ILYRG+KLPFRW RS T R +D++LR+ LG D +I SP LYDV G ++SP Q R R R VGA F GQ +P +NV +G+P +RRS S G + HA T+ G + A A ++ L++V G+ + W++ ++ +RQ+ + +R + +E + AKAVA +LA VL R RTR+LA QA+ +L Q +Q E +QA+ALL+GLR++VASLT + YE LVAVSIDALERD N S + + P LD E VD A ALKTDI L L AE+ +C+++RL E ++ + A C P T T AA+ A + RT K G+P NG E G GA AE +A Q+ GG ++R + Q A D RA W +R++ DD +L+ FL H + G + AR RG + +E G A S WG +LWALFR FSD S + + R +P A S R T + F V GS RE + + +DP A+ S RS R+ R P EGL F QF A+EGV E+LTVG G G G GGG +DD + GGI GEG VTM A +V++A++LA KELLARD ARET ALLDPSLQ L+VNE+ILHE+F HY +Y P + D N G +GG GG GGDGG G + GLR GG A +FGL + +GA+
Sbjct: 29 AISVSSLKLGVAEDLDGAERPIVIRLSDQHGNHRETTPRTCSNVNPLAP-SDGRATA------WCEELQMPILPGVDAILFEIFLVAKPAYTNHGCGNPETTDTIGSG---GSVPTRRDRLGPANPADHHHEPQQGS-------GSTEGGCKTPRS-GGAPADPNRESQPYALIGAVALLLSEVVGAWRTMESPLFDIAGGVAGRIRMAAIIVGRPNPGPG---GPLEGERRRSRGDAKRSEPPSALEDDDC---TPTRLPAAEVAEAERGGPCGCRRKSEFSPTSPCCCRQHGRRGSGGSGSRGGLPPFSRSEDPAGIPA---EQGDLLGGAPAAAKVGCCSRVGAV-EMVPKAVILYRGMKLPFRWLRSGTARLMDKSLRQMLGIN--DTSIASPALYDVDNGG----------------------------------------SSSSP------------------------------QHVRSSRSSRRVGATGFGHDDGQGLRPQLSLPKKNVCPSGAPSAIRRSASDGSLRRFIQHAVVTTTTGDGIVAGLAKIS------------LGCACLNSVTGESDVAFWKKGNFAREVTERQQRLTRKREEKNAEEEKQRRLETEHAKAVAGRLAHRVLCRVRRTRVLALXXXXXXXQASKLKLQQDMEEKQGREHKQAIALLEGLREEVASLTATAYEGLVAVSIDALERDLNDSDAADHQGMTGQSVSNATTP-----DALDKEGVDRAATALKTDIARLSRLRAERNKCVEERLVEIHAIKDAAAACDGPP-----TPTVAAASTAHIKHAAASRTPAKTRAGGAGTGNDGDPNNSPSVNGPGEHGGTGAANAEQRASFSAAGQLGRGGGTIHRSERDFSEHAFRGGSGDDRLTFHAPSPSPSATTKSAGIKGSGSRGRRQAAAADARAGDVWESIRNK--DDAILENFLTRHTRHAFELLGGKARLAHARARGVYEN--EEGTGGARLCDADSGWGSSLLWALFRHFSDCSLSSPTSLQRW-------------------SKPVTAGS-------------VSRETATAKTFSD------------------------------VRGSPRE---------------------------PSASSIDPPRASE--------------------------------------------------------------------------------------------SGRSRRKTRCLPPEGLNFSQFETALEGVLEVLTVGS------GEPCFGCG--------GGGREDDSEKNIVGYGGIGEGGEGDIGSVVGGGNAIRQRTVTMAQRFAMAGVVQLAKELATKELLARDCHARETFALLDPSLQYILDVNEQILHEIFAHYCRRYA--LSPILPRGD------NDSAVPGRAEGGSDLGGVGRGGGDGGRSGSDIVPRRTALGLRFEGGTAFAREFGLTTVVGGSIGAL 1193
BLAST of mRNA_P-littoralis_Contig79.80.1 vs. uniprot
Match: A0A6H5L1A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A1_9PHAE) HSP 1 Score: 331 bits (848), Expect = 2.450e-89 Identity = 430/1437 (29.92%), Postives = 585/1437 (40.71%), Query Frame = 1
Query: 1 AVCFSALYAEKNKNLEQSAKQLFVRVSDQHGHR-ETAPRGIS-AKPAAPRSDGKMVAGTTSGTWCEELE-------------------------------------MPILSDVDGVLFELLLLATPRHADDERDRSQSAKPVDSNSTSGSFPVQLDRLSVANNDDLHHERYAGTDVGVRENGAPGGGVVCPAHVDGLETDQDKNPRPCLLVGAVALLLSEVADVWREMESPLFGSAGGVAGTIKLVARVL-RGDSDGKKRIESTAWDETPNTMSGAQNPTAAVHQETCLTRTAVRVSASPSVEVGLATPFAVAR-----PTSTEGGTAAACPPRTGDGRDRRRVHREGSVSGSPC---------CGGHWGSSRRGRPGSGQWGCAEQLGLLHETAPRATILYRGLKLPFRWFRSATVREIDEALRETLGERNCDAAIPSPLLYDVGTGNRVDLKPSTPSGRNFFAFFE--NNVSPNNDWTGCTVGIGVGFRDAASPSALFGPRLSQTGEHNPCAPASRKAFPLRRGQQRRLHRYCRGVGAVDFERHGQKAEQVCKVPGRNVSQNGSP--LRRSLSVGDIPSRSH----ATSKGGSVTAARALLADKSLLDNQGWSGTSGVTLDTVVGKEALRHWQQHQQLQQSQQRQECVALERSIRQGKEHVKAKAVAFQLACLVLRRSHRTRLLATALWRWKAQAAAYELDQVRRGEQKHEQQQAVALLQGLRKDVASLTTSTYEELVAVSIDALERDFNASSVSGAGARSAADFPIDCLPREDLKGTLDSESVDLAVMALKTDIDGLKMLGAEKTECIKKRLREARDVQGSTATCRHGPE-IVFATATATAAAIAGTPPPVSPRT----SIKQGNPKFK---NGKNEDGSLGANIAETKAE-----QIDTRGGQVNRLIEEQGQ--------------------------------------------AVDGRA---WGRVRDREGDDDVLQGFLAHHAEELYSSFG--KRLDRTCARRGCDADGGDERLAGLGTITAGSEWGLEVLWALFRAFSDYPPPSRSEVLRTRFSVSCAGANIPVKV-NGVTD-RPSPADSDFLTMDRGLDQYGTKRTTMSLLAFLGVCESAGLVIPAVRAASTLGGNDRGGGLVEGVVGSQREGGIPRRGRGDGGCFAKDGECKLLEVPREAVALLDPADAASIFARTMRRYGRCRTAAHHRARSASPGVRDGRNGEVRRDHRTXXXXXXXXXXXXXXXXGLCCRGDAGTHTDSQQQRQSENYHTRRQR---QRNCPRSSRSSRENRSDPEEGLEFPQFVAAIEGVTELLTV--GHDDSGVGG--------SDVVGSGSGGGKRGEGGGLKDDDGLSEESAGGIRGEG------VVTMTPELARTCLVRVAQDLAAKELLARDRRARETLALLDPSLQSALEVNEEI 3876
A S+L ++L+ + + + +R+SDQHG+R ET PR S P AP SDG+ WC EL+ MPILS VD +LFE+ L+A P + + ++ + GS P DR AN D H E + +G+ G P G + D + +P L+GAVALLLSEV WR MESPLF AGGV G I++ AR++ R +S +E + G P++A + C T R+ A+ E P R PTS P G RR GS G P G G P + + C ++G ET PRA ILY G+KLPFRW RS T R +D++LRE LG D +I SP LYDV TG V L P SGR A E ++ SP + + + G +AA S +G K F R +RR H G G D GQ + V + +P +RRS S G + + T+ G + A LA +SL G S L++V G + W++ + A E + RQ + H K + + R + + +A L A E +Q+ E Q ALL+GLR++VASLT + YE LVAVSIDALER+FN S + AD + D + D + VD AV +LKTDI L L AE+T+C+++ L E ++ +TA P V A TA A + P R + G+PK NG E G G AE +A Q+ GG ++ + + A D RA W VR++ DD +L+ FL H E + G RL A C+ + G G A S WG +LWALFR FSD+ PS + R V+ + N +D R SP + +++ + G MSL+AFL VC SAGL+ PA GG GGG+ LDP++AA IF RTM YG + AHH + + RD DHR G + ++ H +R R ++ S RS R +R P EGL F QF A+EGV E+L V G G GG +++VG G EGG E G + G G V M P LA +V++A++LA K+LLARD ARETLALLDPSLQ L+VNE++
Sbjct: 199 AFSVSSLKFRVAEDLDGAERPIVIRLSDQHGNRRETTPRTCSNVNPLAP-SDGRATV------WCGELQASACIDVVDDTYPAWETFVPFGSDGDHCIRVVFSTLQMPILSGVDAILFEIFLVAKPTYTNHGCGNPETTNTI---GRGGSVPTWRDRRGPANAADHHREHQ-------QLSGSIERGCKTPRSW-GSQVDPKRESQPYALIGAVALLLSEVVGAWRTMESPLFDIAGGVTGRIRMAARIVGRPNSGPGGPLEGERRRSRGDAKRG--EPSSAFEGDGC---TPTRLPAAQVAEAERGGPCGCRREWDCSPTS----------PCCGRQHGRRGRGASGSRGGLPSFSRSEDPAEAAAEQGDLLGGAPAAAKVLCCSRVGT-DETVPRAVILYHGMKLPFRWLRSGTARSMDKSLREMLGIN--DTSIASPALYDVSTGEHVRLDPRNASGRTLLAVSEGDSSFSPQHTRSSRSSQRVGGGENAAGLSTSKNAFTHTSGRDE-------KRFCRRFRCRRRRHDTATGFGHDD----GQGLRLQLSLARTKVCPSEAPSAIRRSASDGSLRCFTQPAVVTTTAGDGIVAG---LAKQSL-------GCS--CLNSVAGASDVALWKK-----------DNFAREVTERQQRLHRKREEKNAEXXXXXXRETEHAKAVAGRL----AHRGMEE-------KQEREHNQTTALLEGLREEVASLTATAYEGLVAVSIDALEREFNDSDADDH--QGMADQSVGNTTTTDAQ---DKKGVDRAVTSLKTDIALLSRLRAERTKCLEECLGEIHAIKDATAAFDGPPTPTVAAATTAYIKRAAASRTPAKTRAGGAGAGNDGDPKTSPSVNGPGEHGGTGVANAEQRASFLAAGQLGREGGTIHHSERDSSEHVFRGGGGDDRLSFHAASPSLSATTKSSGINGSGSRGRRQAAAAAADARAGDVWESVRNK--DDAILENFLTRHTRETFELLGGKARLAHARASGVCENEEGP----GGARFDADSGWGSSLLWALFRHFSDFSLPSPTSPQRWSKPVTAGSVSRETATTNDFSDVRGSPREPTASSIEPPVGCDGVPERRMSLMAFLLVCRSAGLIWPA-------GG---GGGMXXXXX----------------XXXXXXXXXXXXXXXXXXXRRLDPSEAARIFTRTMIIYGSMGSGAHHHTATCNDHERDSTAQHC--DHRRAKSPRDGRRKAAH---GKDQQSPGDFKASPARRHLQRTKHIKRIRPFDEQRASESGRSRRNSRRLPPEGLNFRQFETALEGVLEVLAVDSGQPCFGCGGXXXXXXSENNIVGFGG----TSEGG---------EGDIGSVVGGGKTIRQRTVRMAPRLAMASVVQLAKELATKDLLARDCHARETLALLDPSLQCILDVNEQV 1499 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig79.80.1 >prot_P-littoralis_Contig79.80.1 ID=prot_P-littoralis_Contig79.80.1|Name=mRNA_P-littoralis_Contig79.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1442bp AVCFSALYAEKNKNLEQSAKQLFVRVSDQHGHRETAPRGISAKPAAPRSDback to top mRNA from alignment at P-littoralis_Contig79:254060..262622+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig79.80.1 ID=mRNA_P-littoralis_Contig79.80.1|Name=mRNA_P-littoralis_Contig79.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8563bp|location=Sequence derived from alignment at P-littoralis_Contig79:254060..262622+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig79:254060..262622+ >mRNA_P-littoralis_Contig79.80.1 ID=mRNA_P-littoralis_Contig79.80.1|Name=mRNA_P-littoralis_Contig79.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4326bp|location=Sequence derived from alignment at P-littoralis_Contig79:254060..262622+ (Pylaiella littoralis U1_48)back to top |