mRNA_P-littoralis_Contig79.71.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.71.2
Unique NamemRNA_P-littoralis_Contig79.71.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig79.71.2 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.030e-65
Identity = 112/158 (70.89%), Postives = 124/158 (78.48%), Query Frame = 3 
Query:    9 MNEGTLMRALRQHRKVRGPDFHQPATRSNQGKLENGDGGIEKRQPLTKEERAEAEKITAAAVXXXXXXXXDGEDAENVDPQQALAEGGAGVG-DAG---PGLIDPVNFFKEFDAWVDGKYPGDRGSATRVKVAFRKQHRAFVAGLNLEDIEEVAQAMQ 470
            MNE +L+RALRQ+RKVRGPDFHQPATRSNQGK+ENG+GG+EKRQPLTKEERAEAEK+ A A          G   E+   QQAL  G AG G DA    P LIDPV F KEFDAWVDGKYPGDRG +T+VKVAFRKQHRA V+ LNLEDIEE+AQAMQ
Sbjct:    1 MNEASLLRALRQYRKVRGPDFHQPATRSNQGKIENGNGGVEKRQPLTKEERAEAEKVLAEAAAAG------GGGLESAHTQQALPGGDAGAGADADTTRPDLIDPVEFLKEFDAWVDGKYPGDRGRSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ 152
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BLAST of mRNA_P-littoralis_Contig79.71.2 vs. uniprot
Match: A0A836CKU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-18
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 3 
Query:    3 ATMNEGTLMRALRQHRKVRGPDFHQPATRSNQGKL-----ENGDGGIEKRQPLTKEERA--EAEKITAAAVXXXXXXXXDGEDAENVDPQQALAEGGAGVGD-AGPGLIDPVNFFKEFDAWVDGKYPGDRGSATRVKVAFRKQHRAFVAGLNLEDIEEVAQAM 467
            ++ +E + MRAL ++ K+R  DF+ P     +  L     +       KR PLT EERA  EA++ T A          + + A+N         G A  G+ AG    D  +F K FDAWVD ++P DR +AT+VKVAFR++H+  VA LNLE+ EE+A+A+
Sbjct:    2 SSFDEASFMRALSRYPKIRNSDFYLPLEEKPKSLLIAASRDASSTATAKRVPLTPEERAAQEAQRATQA----------NSKGADN-SXXXXXXXGDASTGETAGAVAADSADFLKVFDAWVDSQWP-DRATATKVKVAFRREHKRLVASLNLEETEEIAEAL 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.71.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID4_ECTSI5.030e-6570.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKU6_9STRA1.190e-1838.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:247847..252394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001480.1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791617.168249-UTR-P-littoralis_Contig79:247846..2479531680791617.168249-UTR-P-littoralis_Contig79:247846..247953Pylaiella littoralis U1_48UTRP-littoralis_Contig79 247847..247953 -
1680791617.2280974-UTR-P-littoralis_Contig79:252386..2523941680791617.2280974-UTR-P-littoralis_Contig79:252386..252394Pylaiella littoralis U1_48UTRP-littoralis_Contig79 252387..252394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791617.1825237-CDS-P-littoralis_Contig79:247953..2480221680791617.1825237-CDS-P-littoralis_Contig79:247953..248022Pylaiella littoralis U1_48CDSP-littoralis_Contig79 247954..248022 -
1680791617.195975-CDS-P-littoralis_Contig79:248670..2489401680791617.195975-CDS-P-littoralis_Contig79:248670..248940Pylaiella littoralis U1_48CDSP-littoralis_Contig79 248671..248940 -
1680791617.2136996-CDS-P-littoralis_Contig79:252260..2523861680791617.2136996-CDS-P-littoralis_Contig79:252260..252386Pylaiella littoralis U1_48CDSP-littoralis_Contig79 252261..252386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.71.2prot_P-littoralis_Contig79.71.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 247954..252386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.71.2

>prot_P-littoralis_Contig79.71.2 ID=prot_P-littoralis_Contig79.71.2|Name=mRNA_P-littoralis_Contig79.71.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MNEGTLMRALRQHRKVRGPDFHQPATRSNQGKLENGDGGIEKRQPLTKEE
RAEAEKITAAAVASAAAGGGDGEDAENVDPQQALAEGGAGVGDAGPGLID
PVNFFKEFDAWVDGKYPGDRGSATRVKVAFRKQHRAFVAGLNLEDIEEVA
QAMQ*
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mRNA from alignment at P-littoralis_Contig79:247847..252394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.71.2 ID=mRNA_P-littoralis_Contig79.71.2|Name=mRNA_P-littoralis_Contig79.71.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4548bp|location=Sequence derived from alignment at P-littoralis_Contig79:247847..252394- (Pylaiella littoralis U1_48)
TTGCGACGATGAACGAAGGAACTCTGATGCGGGCTCTGCGGCAGCACCGC
AAGGTTCGGGGGCCAGACTTTCATCAGCCGGCAACGAGGTCGAACCAGGG
CAAGCTTGAGAATGGGGATGGCGGCATAGAGAAGGTTTGTTGTGGGCATG
CTTGCTTGCCGTCGGCACTTTCGTTTGTGGCACGTGCTTGGTTGTTTCTT
TGCAACGCATACAGGTTTATACTGGACTGACTGACTGCTGTACAGCAGTA
ACAGCCTTCGTTTTGGCCTTGATACATCAACCTGGCTGCAGGTCCGTCAC
CGTCCTGATTGCAGCGATACAGCACAGCTGCACCAGTACCTTAGCATGCA
GCAATATCAGCTTTTCTTCGGATTAGATTGCACCTCACGAAAGGTAACGG
CTGTCAAAGCCGTAGTACTCTGCGACGATAATCGTGGGAGGGCATATTTC
ATTCTCCATCATACTCTCTTGGCAATAACTCTCTTTGCCTCTCTCTCTCC
CTGTGGGGTACAAATTACTTCGTTGTTTTTCCACCTCCTTATATACCGCA
TTCGATACAGGTGGTAGTCGACAGCAGTCCTTCGGTGAACCAGGTTTCAT
ACCACCTGCATACGCCGACCTGTACCTCGTTTGTGTGTGTGTTGTCAATC
CATTTATTCTGGGCACCGTCATCTGCATACGCCGAACTGTACCTCGTTTG
TGTCGGCGCCCGTGGATCTGCCGTCACAGGCAGGAGGAGTGACCACAGCA
TCAAAAATACGCCTGCAGAACCTACTCCACAAACCCATACCAGTATTTGT
GAGGAAATACCGCTGCTGCTGCACTACTGTACTCTACAGCAGTTGTTGTT
GTTGTTGACTCTCACATTAGCTCATCGCCAAAATCTAGCCCGTGGTCACA
AAAAGTGCTGAGCCCTAGGAAGATAAAAAAAAACAGAAAGAAACTACGAG
GGAATACCCAAGAAAGACCGAGGAAGATACACCTTCCAACGTGGTGTGCA
TCACTGAACTACAGCAGTCACAGCAGCACCAACAGCAAACGTACTTCCAG
CGGTGGTTCATTTGACTACAACATCGTGTTCAGTCTCCTCCCGCCCCACT
TAGAACTAATAACCACGTGCTGTATGACTCATTACTCCTCATAGAGTACT
CAAAGAAGGGATGGGACACACAACACACATCCACACCTATTCTAACTCAA
CCCCTAACCCCAAAGCCCAAAGCCCGTAGCTATGATAGGATGCTGTACCG
TGGCGAATTGGCTAGGATGCTGTACCGTGGCGGATTGGCTAGGATGCTAT
ACCGTGGCGGATTGGCTAGGATGCTGTGCCGTGGTGGATTGACTTGGATG
CTATAGCGTAGCTGATTGGAAAGGATGCTGTGCCGTGGCGGATTGGTGAG
GATGCTACACCGTGGCGGATTGCAGTTGCTCTCTCGATCTTACTGCTCAC
TTATCAGTAATGCTCGGTGCTTCTTAACCACGTTTCGCACTTACAAATAG
TCAAGTTTCGAAAACCTACTGCTTTGATCTACGAGTCTGCGCCATTTGAA
CAAACCAACCATGCACATTTTGGCGCTTTTGTGCTACATAGGGGATATAA
TGTAGGTTCTGGAGGCGTATTTTTGATGCTGTGGTCACTCCTCCTGGCTG
TGACGGCAGATTGACGGGCGCCGCGTTTGTGTGTGTGTGTGTGTTGTCCT
CCCTCCGGGCTCCAGTCTACATCTTTCGGAATGAAGTGGGTGCGTCAGCC
GGGGTCACACAGAAGGAAGGTTACACACGAGCTTTTTCGTTTTATATTTT
GTTTTTATTTACCCACCTGCGGTATGTACGTGCGTTTGGTTTTAATGCGA
GTCGGGAACAGTCCCTTCCCTCTGTTTACTCACGAGTAATTCGCTCACTG
AAAGTCGCAAGAAATGTTCTCAGAGAGAATCGAACTTACGACCTTACGAC
TAGTGGTTTAACGTGGGAACCACTGTACCACCCGGGGCGACCGTTCAACA
ACACGATTTTCGTGTGTATCACACGTTCGCTGCATACGTTTCTCGTCCCC
CTATATACAAGTATGATCGTATGCATGCCTCGTACTATACTGCGGTACTA
AAGCAGCACCGTGTTGGACGCGTTTACGCCATGATATTACATTCTAGAAG
TAGCGGAAAGGTGTAGTGGTGTCGCCCCAACCCAAGTGCACAGCTGATGT
CTGGACTTCACGCGTCCTATGACTTGGTGAATAGTTTCCGCACGTACTCG
TACGTCCATCGTGCCGCTTTTTCTTCTCCTCTATCCCTGCCATACGCACG
GCTCTGCAGGCAGGACATTCCGTCGGCGCACAGAATCGAACCTCATATAT
CAACTCCACAGCAGTACAGCAGCTCATCCTCGAGGGTTTTGTGCAGACAT
TTTTTCAATTATCATGCAGATTGTCCCCGAGACTCTTGTCGCTCCAGCCG
TGCAGGGAAAACAGCAGTACATGACGTCCATCCGTTGGCGCTCAGAAGCG
CACTGCATGTTCACGATTGCCTGTGGGTTCTTGTAAAAGATTGTACTTTT
TAATGCAGATCGGTTGGTTGCCCCTGGCACAACTGGTGTCATAACTCCAC
ATCGATAGCTTTCATTCCCAGGACCATCCCTCAGTGGTATCATTTTACGT
GGCACCAGGTACCGATACATCGTTGCAAGGCTATAAAGCGTATTGCCTCA
CCCAGATTCTTCGGACGCCCATAAATGTCTTTCTGGCTCCCGTACATGTA
CCTTCGTGAAGGACGCTACCTACAAAGCGAGCTGTAGAGGCCACCAGAGC
ACTCTGGAGGTTGCCACACGGTTGTTGTGGCGGCGATGTATGTATGATAC
CTGTGGATGTTCAATCCTTCCGCATCCACCTGATGCTACCGTGCTGCTGT
TGTGTGTGTGTTTGATGATGTTGTATACGGTGGTTTTGCATTTCGGGTTT
TCCACATGAGCTCATCGCACAGATTCTGGCCCCGTGGATGTAAAATGTGC
TCGAGTGCCCACTAAGCGAGACCCGTGGAATAGGAAGAATGCCTGGTGCA
CCGCTGGTTCGTGGTATGTACGACACCATGAGCACAGTTGTGTGGTGGTC
ACGGAAGATACGAGCGCACTCCGGATTCACACACGTTTCGAAAAGGTGGC
AAAACTTCCTTCCTCTGTTCTGCTGTACCGGTGTAATGTTTTTTTTTTTT
TTTCGTGAAGCTTGCAGCCGGCTTACCGTGCGAGCCGCGGCTCTGCTGTG
GCTCGACTGGCGCACTATGACGTTTGAGGATAGATGGGCTGGTTAAGTGT
TGCACGTACATTGTGAAGAGTGAAGGTAAAGCAAGGACGCGCCAAGCGGT
CAACCCCGTCTGGAGCTTCTCACCTGCCTGCCCCACCACCCCGCCCTTCT
CCGGGGAAACCCTAAACGCGCATGCAATGTATGTATGATACGTATACTTC
ACAGCGACAACCGCTCACGAAAGAAGAGCGGGCGGAGGCAGAAAAAATAA
CTGCGGCGGCGGTTGCGTCGGCAGCGGCGGGGGGCGGGGACGGGGAGGAC
GCGGAAAATGTCGATCCGCAGCAGGCGTTAGCCGAGGGGGGTGCGGGGGT
GGGCGATGCCGGGCCGGGGCTGATCGATCCGGTTAATTTTTTCAAGGAGT
TCGATGCCTGGGTGGACGGAAAATACCCCGGGGATCGGGGGAGCGCGACG
AGGGTCAAAGTGGCTTTCCGAAAGGTGAGGACCTTTTTACTTTATTTCCG
TTGGTCTGTTCTGATCTACCGGTATCAGGGTTGTTGAATTTGAAACGGGT
AATGTCCGTGTGTCCTTCCTCCGTCTGTTATGCAACACCCGGTGGAAGCT
TTCCTTTGTTTTTGTTTGTTGTGTGCAGTAAGTTTGTTCCCGTCTGTCTA
CTGTCTCCAGTTTACTCACGGACGGCTGACTTCCGTGCTCCAGCGTGGTA
TATATTTTGTAGTAACAAGAAATATTTTTTTTCACCTCATGGAAGCCCGC
CAGCTTGGGAAGTCCCCCTTGTCACCACGAACGAACGCACAACAACGACG
CTACCAAGATGCATTTATCGTACGATACTCTTCGTTTGTTGTAAATCGCA
AGAGGCGCAAAAACTTGTCAGATTGCAACGGCAATACACCAGAGCGCCCA
TGTAGCGAACAGCAGCAGCAGCTGCGGTAGCGGCAGACACCGTGCTAAGA
CGCGCACTTCCTGTATCTACCGCTCGCCGTCCTTGGTCGGTTTTCCTGAT
CCGTTTGATTCATGACTACGGACATCGTCCTCCCCCCCCCCCCCACCCGC
CCCGCCCCCTCTCTTCCCGCATTTTCCTGCTGGAATTCAAAAACGCATCA
ACAATCAATAAAAAAAAACCAGCAACATCGAGCGTTCGTTGCCGGGCTTA
ACTTAGAGGACATCGAGGAAGTCGCACAAGCCATGCAATGAGATTTTTGC
AGTAGCGGTTCGTTCGTAGGAAATTCGCCTCAAAGCCCAACGATTTCGCC
GACAGAGAAGAGCGCGGGCGCGCGCGCTGCGAGGGCTGGAGGGGGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:247847..252394-

>mRNA_P-littoralis_Contig79.71.2 ID=mRNA_P-littoralis_Contig79.71.2|Name=mRNA_P-littoralis_Contig79.71.2|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig79:247847..252394- (Pylaiella littoralis U1_48)
ATGAACGAAGGAACTCTGATGCGGGCTCTGCGGCAGCACCGCAAGGTTCG
GGGGCCAGACTTTCATCAGCCGGCAACGAGGTCGAACCAGGGCAAGCTTG
AGAATGGGGATGGCGGCATAGAGAAGCGACAACCGCTCACGAAAGAAGAG
CGGGCGGAGGCAGAAAAAATAACTGCGGCGGCGGTTGCGTCGGCAGCGGC
GGGGGGCGGGGACGGGGAGGACGCGGAAAATGTCGATCCGCAGCAGGCGT
TAGCCGAGGGGGGTGCGGGGGTGGGCGATGCCGGGCCGGGGCTGATCGAT
CCGGTTAATTTTTTCAAGGAGTTCGATGCCTGGGTGGACGGAAAATACCC
CGGGGATCGGGGGAGCGCGACGAGGGTCAAAGTGGCTTTCCGAAAGCAAC
ATCGAGCGTTCGTTGCCGGGCTTAACTTAGAGGACATCGAGGAAGTCGCA
CAAGCCATGCAATGA
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