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Homology
BLAST of mRNA_P-littoralis_Contig79.54.1 vs. uniprot
Match: A0A6H5KZV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZV2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.650e-25 Identity = 89/217 (41.01%), Postives = 111/217 (51.15%), Query Frame = 2
Query: 383 MRLEKTRRGERLEILSLEQACKAEEISTLHAQEITADLDAKSQVLEGLAADAAEDAXXXXXXXTTSVAPFKNQQVAD--------GSDGHNTC-----SRVEGSATLLAALNEMPSHEGKRKQLSSMLQHTEHQTRSEIAEAARPAAELR----------------------------------RSARKRDAERLDLEHETTALRNGLGELAEENEI 892
M+LE+ RR ERLE+ CKA E++ L AQE ADLDAKSQ+LE LA D AEDA + +Q G+ G N +R EG A L+AAL+E+P+HE KR+ L+S+LQ TE QTRSEIA+AAR AA R R A++RDAERL LE ET LR L E+ E E+
Sbjct: 1 MKLERIRRSERLEV------CKAVEVAMLQAQEEGADLDAKSQILENLAEDEAEDAAAGNHGASFPAPSGTHQDALSACSLPDTGGNIGSNEGKPKPPARCEGFADLVAALSEVPAHENKRQHLASILQQTEDQTRSEIADAARLAAGFRQDKSEFHSFIEYAPWLEISQTCVLLNRVPCGGTMRMAKQRDAERLPLERETAILRQELAEMTSEEEV 211
BLAST of mRNA_P-littoralis_Contig79.54.1 vs. uniprot
Match: D7FID0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID0_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.730e-23 Identity = 84/189 (44.44%), Postives = 99/189 (52.38%), Query Frame = 2
Query: 323 SCWRRVDELEDEEASLNHQFMRLEKTRRGERLEILSLEQACKAEEISTLHAQEITADLDAKSQVLEGLAADAAEDAXXXXXXXTTSVAPFKNQQVADGSDGHNTCSRVEGSATLLAALNEMPSHEGKRKQLSSMLQHTEHQTRSEIAEAARPAAELRRSARKRDAERLDLEHETTALRNGLGELAEENE 889
SCWRRV ELEDEEASLNH+ MRLEK RRGERLEIL LEQ C+A E++ L AQ+ A LDAKSQ+LE LA D AEDA + + + S ++ RV S+EGK A P RR A++RDAERL LE ET LR L E+ E E
Sbjct: 357 SCWRRVGELEDEEASLNHRLMRLEKIRRGERLEILGLEQVCQAAEVAMLQAQDEGAHLDAKSQILENLAEDEAEDAAAGNHGASFPASSGTHHDALPASSLPDSGGRVG-------------SNEGK----------------------AEPPT--RRMAKQRDAERLPLERETAILRQELAEMTSEEE 508
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1214 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 1062 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791616.7899659-UTR-P-littoralis_Contig79:203350..203501 | 1680791616.7899659-UTR-P-littoralis_Contig79:203350..203501 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig79 203351..203501 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791616.8040514-CDS-P-littoralis_Contig79:203501..203671 | 1680791616.8040514-CDS-P-littoralis_Contig79:203501..203671 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 203502..203671 + |
| 1680791616.8140023-CDS-P-littoralis_Contig79:204362..204462 | 1680791616.8140023-CDS-P-littoralis_Contig79:204362..204462 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 204363..204462 + |
| 1680791616.826348-CDS-P-littoralis_Contig79:205753..205974 | 1680791616.826348-CDS-P-littoralis_Contig79:205753..205974 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 205754..205974 + |
| 1680791616.8377447-CDS-P-littoralis_Contig79:206399..206549 | 1680791616.8377447-CDS-P-littoralis_Contig79:206399..206549 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 206400..206549 + |
| 1680791616.8529694-CDS-P-littoralis_Contig79:207771..207868 | 1680791616.8529694-CDS-P-littoralis_Contig79:207771..207868 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 207772..207868 + |
| 1680791616.8637717-CDS-P-littoralis_Contig79:209048..209153 | 1680791616.8637717-CDS-P-littoralis_Contig79:209048..209153 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 209049..209153 + |
| 1680791616.8769317-CDS-P-littoralis_Contig79:209642..209861 | 1680791616.8769317-CDS-P-littoralis_Contig79:209642..209861 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig79 209643..209861 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig79.54.1 >prot_P-littoralis_Contig79.54.1 ID=prot_P-littoralis_Contig79.54.1|Name=mRNA_P-littoralis_Contig79.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=354bp
MDMVEFHLSYASSSQNNDEQQQQQQSDQNSAGSGAKTTPAVASSLSQRIE LLDSETRSCWRRVDELEDEEASLNHQFMRLEKTRRGERLEILSLEQACKA EEISTLHAQEITADLDAKSQVLEGLAADAAEDAAAAAAEDTTSVAPFKNQ QVADGSDGHNTCSRVEGSATLLAALNEMPSHEGKRKQLSSMLQHTEHQTR SEIAEAARPAAELRRSARKRDAERLDLEHETTALRNGLGELAEENEIQAR MDRAIQIGKGLERRLKHASSKLASVRDSLAQGPAKHMEEEEQQSLQLMQG IAEAKARLRSRQNVSEASPWTGSTNRGRGGRALSLTPALSQSRLQMQYSR GGVR back to topmRNA from alignment at P-littoralis_Contig79:203351..209861+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig79.54.1 ID=mRNA_P-littoralis_Contig79.54.1|Name=mRNA_P-littoralis_Contig79.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6511bp|location=Sequence derived from alignment at P-littoralis_Contig79:203351..209861+ (Pylaiella littoralis U1_48) GGCGTACGGGGAAAAGTTCCTGTGTTTCCACACCTTTTGACCCTTTGCCG
GATGCAGCGGGCAACTCACCTCCTACCGCAGTCCCCTCTGCCCTAGAGCG
AGGAACGTTCCCTGTCTTGGGAGCCTCTTGCTGTGTTTGCAGCAGTATCG
GATGGATATGGTTGAGTTTCACCTCTCCTACGCGTCTTCTTCTCAGAACA
ACGATGAGCAACAACAACAACAGCAGAGTGACCAGAACAGCGCCGGGTCA
GGAGCGAAGACAACTCCCGCCGTGGCGTCGAGTCTAAGCCAACGCATAGA
GCTACTTGACAGCGAGACGAGGTGCACCACTCAACTTGTGGACTTGTTCT
TTGTTTGTTCGGAGGACCTCTTGCGGTCTACTGGACAAATTTGTTTGGGT
GTAAGCCCGACGACGCGAGGCAAATAGATAGAGGCCTCTTTCTGCTGACA
ACACGAACGAGAGGTGGAGAGAGAAATATTTACTCCGTATGTCGGATTGG
CTTTCACTGGGCAACATGCATCCACCTATGCCTGTAGCCAAGGACGAATG
GGTGCGGCGAAGGCAGCTGCTTGAGTCAGCAAACAGAGTTAATCAACGGA
GGGCACGAGCCGTGTCTCTGTTAGGTTATGGCTAAGATTAGCCCCTATAA
CCTAACAGTCTCTTAGTTGAAGGCCGCGAATAGAGAAAGAAAGGCGTTGC
ATTAAATTGTTGGTCATTTTTTACAGCCGCATTGTACTACTTATGATACC
AAGATCCACTTTGCTGCTGCTGTAAGCCGCGTAATGAACCGCCTGGACTG
GTTCGCGCTGAACCCTTGTCTCGATTGATGAAACAGGTTGTGTGGAGACA
GTTTCAGGCTGAGATGCCGCTACACAGTATTGTAAACAGTACAGCAGAAG
TAGTAAAGTAGGGCCATTTTATGAACGTTTGCCACCTTTTTTTTTACGCA
AAAAAATCCACTGCTTCAAAGCAGTAACGACTGAACGCTTTGATTGGTGG
GCATACGCACAGATCTTGCTGGAGACGCGTTGATGAGCTAGAGGACGAAG
AAGCTTCTCTGAACCACCAATTTATGAGGCTGGAGAAGACGCGCCGCGGC
GAGCGCTTAGAGGTCGGTCATTAGGCAACAAATGCTTCACGTTTTGCCCA
CACCCATGTTCGTTCGTAGCTGGTACGAGGTACAAAACAAAGTACGGAGT
GAATTGAAATAATAGGCTTTGTCCTGTCCATTTTTGGGCAGTCGATCGGC
TCGAACACGCAGCAGACAACTTTCATTGAAACCTCGCCGATTTCCGTATA
TGACGACGCATATGTGAGTTATTCTTCAGGAGGTCCATTTGTAAGTGAAA
GAATTGGTGCTAAGAGGAGTGAGACGCAGTGAACGTAACAAATCGTAAGA
CACATAGCCTATATCGAAATGCTCTCATGACGAACGGAATACGGAGTAGA
TTGCAAGGAAAACAACAATTGAAGAAATTTTGTACGGACAAGTTAATGTA
AAACGTAACTATCTTATTGTGGGCAATCTCCCACGCTACTGGACGTTTTT
GTACCACGTTTATGGGCGAGTGATTCTTCGTCGTCCATGGACGTAGTCGA
CTTCCATGAAAGTTTAGAGAACTTCCATGGAAGTCGAAATACCACTTCCG
CGGAGGAGGTAGTTGACACGTCCACGCCGAACTTTTGGCTTCCGTGGAAG
TCATACTTTACGGAAGTTTACCAACTTCAATGGAAGTATTGCCAGCGGCT
CCCATGGAAGTAGAGGTAACATCATGGAAACGGAAGCAACGGAGCTTCAA
TGGAAGTGGTGAATAGCTGGCTGCAACTTGGGGTTTGGGTTAGGGTTGAG
GGTCAGTTAGGGTCAGGGTTGGAGCTAGAGGTCGGGTTCGTGTTAGGGTT
AGGATCAGGTCAGATTTGGGGTCAGGGTTAGGGTTGGGGTCACAGGGTCA
GGGTTGTCAGGGTTTAGCTAAACCGAGTATTATCAAATGACTTCCTCCCA
TGGAAACGCATGTGTTTTCTGGCAATCAGCTTCCATCGACTACGAGTAGC
TTTTCCATGGAAATTTGCAAACTTAAAATTTCTGTTTTACTAGAGATCGA
AAATAAATGTGCCCTGCCTCAACCCAAAAACTTAGTAGTGTATATCATCA
CTCACCACGCCAAAAAGAATATTGCTCAGGAGAAAGACGTCGAATCTCTG
CAACCACCTTCTCACCGAAATGAGAACGTTGTGGCCGGTGCAGACCGACT
CTTCTTCGAAAATATCACTATGTTACCTGAGGGTAGTCAAAAATGACACC
GGATCATGAAACGTGGCGAGCTTGTTTCTGTACAATGAAGCCCACGCAAT
CCACGCCGTGCTTACGCGGCACGCCACTTCTGCACTGGTTAAATTGGGGA
AAGATTTTGAGTCTGGAGCAGGCTTGCAAGGCGGAAGAAATTTCGACCCT
CCATGCCCAGGAAATAACTGCTGATCTGGATGCCAAGTCTCAAGTGCTGG
AGGGCTTGGCCGCGGATGCTGCCGAAGATGCTGCTGCTGCCGCCGCTGAA
GACACTACGAGTGTGGCACCTTTCAAGAACCAACAAGTCGCCGACGGTAG
CGATGGTCACAACACATGTTCAAGGTGCCTGTCTGTGCGTCTATCGTCTA
TCGTCACTCCACTGCAAAATTTTGCCCGTCGGGAACCACACGTCAAAGGA
CACGCTGGGGTTGCCGAAACTCTCTTCAACTACGAAGAACAATGAAAGAG
CAATCGGCGAGGAACGTTGCCTTCATCTCGGAGCTAGGAAAGTGTCACAT
CACACTGCTTTAGCCTGAGTTCCTGGCTTCCAAAAGTACTGCCATGACCT
ACAGTGGAATCATGGAATGGACATCTCAGATGTAATGTGATACCACGGAC
GTCCACATTTCGAATTACGGCGAGGGCCGGATGTCATCACCTCATGTTTG
AGGTTTCCTGCGTTTTTATCATAATTTGTAAACCGACGCTTTCCCAGCAA
TGGCCGTTGAGTAGACTCGCCGCTATTACCCCCCCTTCGCGCCTACCAGG
GTGGAAGGGTCGGCTACCCTCTTGGCCGCTCTGAACGAAATGCCTAGTCA
CGAAGGAAAGCGGAAGCAGCTGTCGTCGATGCTGCAGCACACGGAGCACC
AAACGCGGAGTGAAATCGCCGAAGCTGCACGTCCGGCGGCAGAGCTCAGG
TACTGTACAGCACCTGAGCTATTTTCTTAGCCTGAGCTCCCCCCCCTTAA
TGCATTCGTGGCGAATGTCACAAACTCACCGAAAATACCGAAACATCTTT
TCGGTATAGCAGTAGAAAAGAAAAAGCACAGAGATTATTGAAACCTCACC
ACCCCCGGTATTCCTACTATGCCTACGGAAGAAACCTTCCGCCAAAACTT
GCTGGGGTTGGAAAATTGCGTGGCTCACATTTTGGTACGTTATATTCCGC
GTGTTCGTGGGTATGCGTGCGTACGGTCTTGAACACTTTGAGCATGGTGA
ATCCGCTCAGAAGTCCTTCGTATATACATAACGGCAGGGTGTGAAACGAA
CCCACCAATCAAACAAGAAAAAATATCTTCTGTTGACAGTCGACCCAGCA
ATTCATGCATGTACCATGGCTTCTTGACGAACGTGTAGAAAAATATTGTC
CGGTCTCCCTCAAAAATGAACCTGCGATTTATTCCCCTCTTATATCAAAA
ATTATTTATTTCTCACATAATTGTGAAAAGAGGGAATCCGTCCTCGACAG
ACGTTGGGGGATGCCTACCCTTATTGAAGGTTATCCATTCCTTTAAGGGA
GGTCACCTCAACATTCCCCCCCTTTTCGAGGTTTTTCTTGCGTAGAGCAG
AAGGATTCTTTGAGTGACCAGAACCCGACCGGCTGACGGCGAGTCAGATA
TACTTCATCTCAATCTTCTGTGCGTGTGTACACGGATTCGCTACGTCCGC
GCCATGTCAATTTTAAAGAGTTCTCCACGGTTCGATCCATCTGCAGCTTC
GTCCCTTCGACCATATTTTTTTTCTCGTTGTCATCCATTTTTTTTAAGTG
TTCGTTCAAGAAAATTGTGCTGGTAGGCGGGGTTAGAACCCCGAGCTATT
AGTGAAATGATCTCATCGTTGACGCCAATGTGAACAGAGGGAATTGTCCT
CGACAGACGTTGGGAGATGCCTACCCTTTATAAAGGTTGCCCCCCCCACT
CCTTTTAGGGAGATCACCTGTACATTAAAGCACGAAATATACCCTTCTCA
TTTATTGTGAGAGACTGATGCCGAAGAGCCCCGCGGTCAAAGGATGCAGC
GAGTTCACTGTTGAAGTCATTTGTTAATCACAGCACTAACAACCCTGTCT
GACTAAGATCCTCGTCGAGAACATGCTTGTACATAAGAGTTCATTCAACT
GTTCTCGTTTTCGTTCATCAGGCGATCTGCCAGAAAACGGGACGCTGAAC
GTTTGGACCTGGAACATGAGACCACCGCCCTTCGCAATGGGCTAGGGGAA
TTGGCCGAAGAGAATGAGGTACAATGATCATTATTTAAGCAATATAGAAG
AAAGCGGCTTGCCCACGGCGTCCACACAGCGGCGCCCCCGGAGGGCCTTT
GAATGCTTTGCACCGATAGCTTTTTTTATCGTTTTTGGTCACTGCGCAAA
GCCACTCGAGTTTCAGGATCGATACGTCTATTTTTCTTAAGTGTGTGTGT
GTTGTAGAATTCATACAGTAAATGAGACGAAATATCAGCCATTTTGAGCA
AGTCTCACAGTACAGCCGAAGCGTATCGCCGCCGTTGAGCACATAGATAG
ATTGCTTTGCAGGAACTAGTAGATCGCCGGTCACCAGGTCTAGTGAACAG
TTTGTTGGGCTGAGTTTGTTTTACGGGACGAAGGCTGTTCATATGGGTGG
GCCAGGCCTGCACGTTGGTTTGAGTTTGCTCCGGATATAGCTGGTATTTT
TAAATAAAGTACGAGGGTATCGTGCGACATGCGCGCCTCTGCCATTTACG
AAATCTCTACACGTAGATGACACACATCAACCCCCAGATGAACAGGCGTA
CACTCTGTAAGAATTGTCGGCCCTTATTCTTCCCCGCAAACTCCACTATG
CGTGGTGAGGATCCGTTTTTTTCTTTGAGCATTGCTCTCCACTGGTATAA
ATTCAATTAGCGATATGCACCTTAAGATATACTTGCTGTGGAACATAAAT
GGCACGAGTCAATCCCTAGATGACCGGGTGTACACTCTGTAAGATTTGTC
GAGACCCTCACCCATGCCCACTAAAGTTCCACAAATGCTTTGTGGCCGTT
TTTGCTGTGAGCATTGCTCCCCTGGTATAAATTCAACCAGCGTTAGAAGG
CGCCTTCGATGTACCAGGTATACCTGTAGAAAAGTGAAGCCAGCACCATG
AGTTTTGATCGACTTGGCCCGCACCAGATCTACTTAAAGACGATAAATTT
TTATTGCTATGTATGTAAAAATTCAGCTCATTAATTATGAGATATGTCCC
GTAGAGATTTGGAGTGTGTTATGCCATTGTTGCGAAAGCCACATTACGTA
CCATGACAAGACAATCCATTTTATGCACTTTTATTCCCGAACCCTGAGCG
GGCAGAGGTTCCTATTGCATGTGGGATGTGTTGTATATGTATGCCTGTCG
CGACGTATGACCACCACATGAACTGTTCGTCAACCTGTTGTGGAATAGAT
CCAAGCGAGGATGGATCGCGCAATCCAGATAGGAAAAGGTCTCGAGCGTC
GCCTGAAACACGCTAGCAGCAAGCTCGCTTCCGTTCGGGACTCTCTTGCC
CAGGTGAGATACGCGCTGTAAAATGCATTTGCATTTACTGTACTCTTCGG
CACCCGCCCGCGATCCGTGGTGTCTATCGATTGAGTGCCTGTGGACTACG
CGTTTGGACCCCAAACGTTTGTCGATACATCCTGTAAAATGCATTTGCAT
TTACTACCTTCAGCACCCGCCCGCGATCCGTGGTGTCTGTCGATTTAGGG
CCTGTGGACTACGCGTTTGGACCCCAAACATTTGTCGATACTCTTGCCCG
CAGAAGACTACCGTATGTACCGCCTTAGTTTTGGTAGTCCACGCATGTGC
GAGATATTGAACGCTCAAAGTGCGCCTTGTGTGGGGTTTTCAGGGTCTAG
TAAAGACTTTTCGCTTGCGAAAGACCGGTGAGTTCGTGCCTGCAGAGAGG
AAAGTACATGACAGACGCCAAATTGTACTTGGCACCCTCAAATCAACTCG
TGGATTCTCTTCCGGGTATTCCCGCCCCCAATCTGCCATCAGGGGCCCGC
CAAGCACATGGAAGAGGAGGAACAGCAGAGTCTCCAGCTCATGCAGGGAA
TCGCTGAAGCCAAGGCCCGCCTGCGCTCGCGGCAGAACGTTTCAGAGGCT
TCCCCTTGGACGGGCAGCACCAACCGCGGTCGGGGAGGTAGAGCGTTGTC
TTTGACGCCAGCTTTATCCCAATCGAGGCTTCAGATGCAGTATTCGCGGG
GTGGCGTTAGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig79:203351..209861+ >mRNA_P-littoralis_Contig79.54.1 ID=mRNA_P-littoralis_Contig79.54.1|Name=mRNA_P-littoralis_Contig79.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig79:203351..209861+ (Pylaiella littoralis U1_48) ATGGATATGGTTGAGTTTCACCTCTCCTACGCGTCTTCTTCTCAGAACAA CGATGAGCAACAACAACAACAGCAGAGTGACCAGAACAGCGCCGGGTCAG GAGCGAAGACAACTCCCGCCGTGGCGTCGAGTCTAAGCCAACGCATAGAG CTACTTGACAGCGAGACGAGATCTTGCTGGAGACGCGTTGATGAGCTAGA GGACGAAGAAGCTTCTCTGAACCACCAATTTATGAGGCTGGAGAAGACGC GCCGCGGCGAGCGCTTAGAGATTTTGAGTCTGGAGCAGGCTTGCAAGGCG GAAGAAATTTCGACCCTCCATGCCCAGGAAATAACTGCTGATCTGGATGC CAAGTCTCAAGTGCTGGAGGGCTTGGCCGCGGATGCTGCCGAAGATGCTG CTGCTGCCGCCGCTGAAGACACTACGAGTGTGGCACCTTTCAAGAACCAA CAAGTCGCCGACGGTAGCGATGGTCACAACACATGTTCAAGGGTGGAAGG GTCGGCTACCCTCTTGGCCGCTCTGAACGAAATGCCTAGTCACGAAGGAA AGCGGAAGCAGCTGTCGTCGATGCTGCAGCACACGGAGCACCAAACGCGG AGTGAAATCGCCGAAGCTGCACGTCCGGCGGCAGAGCTCAGGCGATCTGC CAGAAAACGGGACGCTGAACGTTTGGACCTGGAACATGAGACCACCGCCC TTCGCAATGGGCTAGGGGAATTGGCCGAAGAGAATGAGATCCAAGCGAGG ATGGATCGCGCAATCCAGATAGGAAAAGGTCTCGAGCGTCGCCTGAAACA CGCTAGCAGCAAGCTCGCTTCCGTTCGGGACTCTCTTGCCCAGGGGCCCG CCAAGCACATGGAAGAGGAGGAACAGCAGAGTCTCCAGCTCATGCAGGGA ATCGCTGAAGCCAAGGCCCGCCTGCGCTCGCGGCAGAACGTTTCAGAGGC TTCCCCTTGGACGGGCAGCACCAACCGCGGTCGGGGAGGTAGAGCGTTGT CTTTGACGCCAGCTTTATCCCAATCGAGGCTTCAGATGCAGTATTCGCGG GGTGGCGTTAGG back to top
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