mRNA_P-littoralis_Contig79.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.45.1
Unique NamemRNA_P-littoralis_Contig79.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5KMY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.760e-23
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 2 
Query:   17 SEGDTERHAELVALLVAAMRRXXE-RRVARTVAVWQVVLRDYSDDDDAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            S  D ERHA L+ LL AA R   E +R   TVA W+VVLR + D D+   +    PP+KRTRRVLPRPDYR SFWWRMLGET
Sbjct:   10 SGSDDERHAHLLVLLAAAKRGRREWQRAVLTVATWRVVLRSFPDGDELEDEGLGGPPVKRTRRVLPRPDYRDSFWWRMLGET 91
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5KQT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.670e-16
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:   89 RRVARTVAVWQVVLRDYSDDDDAGTDE-DNDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            +R   TVA W+VVLR + D D+   +  D   P+KRTRRVLPRPDYRASFWWRMLGET
Sbjct:   35 QRAVLTVATWRVVLRSFPDGDELEDEGLDGGSPVKRTRRVLPRPDYRASFWWRMLGET 92
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5KL26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL26_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.750e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:   89 RRVARTVAVWQVVLRDYSDDDDAGTDED--NDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            +R   TV+ W+VVLR + DDD+   DE     PP+KR RRVLPRPDYRASFWWRMLGET
Sbjct:   35 QRAVLTVSAWRVVLRSFPDDDEL-EDEGLGGGPPVKRARRVLPRPDYRASFWWRMLGET 92
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5KPT7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.170e-15
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:   89 RRVARTVAVWQVVLRDYSDDDDAGTDED--NDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            +R   TVA W+VVLR + D D+   DE      P+KRTRRVLPRPDYRASFWWRMLGET
Sbjct:   35 QRAVLTVATWRVVLRSFPDGDEL-EDEGLGGGSPVKRTRRVLPRPDYRASFWWRMLGET 92
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5JNX9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.620e-14
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:  107 VAVWQVVLRDYSDDDDAGTDED--NDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            V+ W+VVLR + D D+   DE      P+KRTRRVLPRPDYRASFWWRMLGET
Sbjct:   25 VSTWRVVLRSFPDGDEL-EDEGLGGGSPVKRTRRVLPRPDYRASFWWRMLGET 76
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.570e-14
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:  107 VAVWQVVLRDYSDDDDAGTDED--NDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            V+ W+VVLR + D D+   DE      P+KRTRRVLPRPDYRASFWWRMLGET
Sbjct:   25 VSTWRVVLRSFPDGDEL-EDEGLGGGSPVKRTRRVLPRPDYRASFWWRMLGET 76
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BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Match: A0A6H5JQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ76_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   89 RRVARTVAVWQVVLRDYSDDDDAGTDED--NDPPMKRTRRVLPRPDYRASFWWRMLGET 259
            +R   T+A W+VVLR + D D+   DE      P+KR RRVLPRP+YRASFWW MLGET
Sbjct:  116 QRAVLTMATWRVVLRSFLDGDEL-EDEGLGGGSPVKRPRRVLPRPEYRASFWWCMLGET 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KMY9_9PHAE8.760e-2359.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQT0_9PHAE1.670e-1663.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL26_9PHAE1.750e-1664.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPT7_9PHAE2.170e-1564.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNX9_9PHAE2.620e-1466.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGJ6_9PHAE9.570e-1466.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ76_9PHAE1.650e-1157.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:146289..146547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791616.4561455-CDS-P-littoralis_Contig79:146288..1465461680791616.4561455-CDS-P-littoralis_Contig79:146288..146546Pylaiella littoralis U1_48CDSP-littoralis_Contig79 146289..146546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791616.473113-UTR-P-littoralis_Contig79:146546..1465471680791616.473113-UTR-P-littoralis_Contig79:146546..146547Pylaiella littoralis U1_48UTRP-littoralis_Contig79 146547..146547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.45.1prot_P-littoralis_Contig79.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 146289..146546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.45.1

>prot_P-littoralis_Contig79.45.1 ID=prot_P-littoralis_Contig79.45.1|Name=mRNA_P-littoralis_Contig79.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MEPAASEGDTERHAELVALLVAAMRRRRERRVARTVAVWQVVLRDYSDDD
DAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGET
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mRNA from alignment at P-littoralis_Contig79:146289..146547-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.45.1 ID=mRNA_P-littoralis_Contig79.45.1|Name=mRNA_P-littoralis_Contig79.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=259bp|location=Sequence derived from alignment at P-littoralis_Contig79:146289..146547- (Pylaiella littoralis U1_48)
GATGGAGCCTGCTGCGAGCGAAGGAGACACCGAACGACATGCGGAGCTCG
TTGCTCTTCTGGTAGCAGCAATGCGTAGACGTCGCGAAAGGAGAGTTGCG
CGCACTGTCGCTGTCTGGCAGGTGGTCCTGCGAGACTACTCTGACGATGA
TGATGCCGGAACGGACGAGGACAACGATCCACCCATGAAGCGTACGAGGC
GGGTCCTCCCCCGACCAGACTACCGTGCTTCGTTTTGGTGGCGAATGCTT
GGCGAGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:146289..146547-

>mRNA_P-littoralis_Contig79.45.1 ID=mRNA_P-littoralis_Contig79.45.1|Name=mRNA_P-littoralis_Contig79.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig79:146289..146547- (Pylaiella littoralis U1_48)
ATGGAGCCTGCTGCGAGCGAAGGAGACACCGAACGACATGCGGAGCTCGT
TGCTCTTCTGGTAGCAGCAATGCGTAGACGTCGCGAAAGGAGAGTTGCGC
GCACTGTCGCTGTCTGGCAGGTGGTCCTGCGAGACTACTCTGACGATGAT
GATGCCGGAACGGACGAGGACAACGATCCACCCATGAAGCGTACGAGGCG
GGTCCTCCCCCGACCAGACTACCGTGCTTCGTTTTGGTGGCGAATGCTTG
GCGAGACG
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