mRNA_P-littoralis_Contig79.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.38.1
Unique NamemRNA_P-littoralis_Contig79.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig79.38.1 vs. uniprot
Match: A0A6H5KB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB89_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.120e-11
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 3 
Query:  726 SPRSIKDMKKEGEKGAGVPVSRGTKRKEKVVDRRQAKREKEREHMTKTSARVVDLLENPRESEADVVFIGLATELRAKTREDAIRAARAALLQERELEKNELQMQYNLLRGAKQEEEATMVMNELLALLRSPLPEPSAP 1142
            SP SI+D+KK+G  GAG+P SR  ++K+        KREK  +   + +A ++ LL+NP ESEAD V I    E++   R+  IR A+ ++ ++R LE   L  Q  L +    E +      +LLAL  +PLP+   P
Sbjct:   63 SPASIRDLKKQGATGAGIPASRTERKKDXXXXXXXVKREKAAQETKEFNAELLGLLKNPVESEADRVIIDFVREMKKTNRKKDIRLAKKSIQEDRTLEVTTLHEQIALYKEMGNEGQVKETREKLLALYATPLPQLDMP 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB89_9PHAE9.120e-1136.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:135928..140996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2867
Hectar predicted targeting categoryother localisation
Exons3
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791616.3193443-UTR-P-littoralis_Contig79:135927..1359741680791616.3193443-UTR-P-littoralis_Contig79:135927..135974Pylaiella littoralis U1_48UTRP-littoralis_Contig79 135928..135974 +
1680791616.3296046-UTR-P-littoralis_Contig79:137678..1377841680791616.3296046-UTR-P-littoralis_Contig79:137678..137784Pylaiella littoralis U1_48UTRP-littoralis_Contig79 137679..137784 +
1680791616.3396149-UTR-P-littoralis_Contig79:138282..1388751680791616.3396149-UTR-P-littoralis_Contig79:138282..138875Pylaiella littoralis U1_48UTRP-littoralis_Contig79 138283..138875 +
1680791616.361081-UTR-P-littoralis_Contig79:139610..1409961680791616.361081-UTR-P-littoralis_Contig79:139610..140996Pylaiella littoralis U1_48UTRP-littoralis_Contig79 139611..140996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791616.3512309-CDS-P-littoralis_Contig79:138875..1396101680791616.3512309-CDS-P-littoralis_Contig79:138875..139610Pylaiella littoralis U1_48CDSP-littoralis_Contig79 138876..139610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.38.1prot_P-littoralis_Contig79.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 138876..139610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.38.1

>prot_P-littoralis_Contig79.38.1 ID=prot_P-littoralis_Contig79.38.1|Name=mRNA_P-littoralis_Contig79.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MKKEGEKGAGVPVSRGTKRKEKVVDRRQAKREKEREHMTKTSARVVDLLE
NPRESEADVVFIGLATELRAKTREDAIRAARAALLQERELEKNELQMQYN
LLRGAKQEEEATMVMNELLALLRSPLPEPSAPAPIPTREPRTGTKTGVSA
ARAGQGGESIDLTAPDGGRFETGGEISGSGEGAAGGIGSSGEEEEEDLSF
TADHLELLGVRRALNPTRGLRVQVSSWEPRAHRIHRSCHIRVHQ*
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mRNA from alignment at P-littoralis_Contig79:135928..140996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.38.1 ID=mRNA_P-littoralis_Contig79.38.1|Name=mRNA_P-littoralis_Contig79.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5069bp|location=Sequence derived from alignment at P-littoralis_Contig79:135928..140996+ (Pylaiella littoralis U1_48)
CCGCAACTCCATGGGAGAGCAGCTCTTGGGCGATGCCAGGAAAGCAGGTG
ACACATGCTTCGTAGGCAGAGCATCAGAAAGAGCACTGCAACTACTCTGC
TGTGCTGTTGTTGTAGAATGCTTTTGAATTCCCTGCAGACAACCGTGGTG
GGGAGTCAGTTGGATCAGCTGCCTCCGACTCGGTGCAGCTCgGGGGCGGT
GACGAAACTACAAATAAGAGGGATGATCAATCACACTGCAGCTTGTTCCT
TTGGGCGGCAGCACAGCCCACGCTTTCCTCCGGTATCGTATCACAGGTAT
CCCGTAGCTGTTCAATCGCCTCTATCAGGACATTACTCAAAATCTGACCA
ACCCGTGGTGACGCGTAGGGCATAACTTCTGCGCATGTGATGGTGCGATC
GGCACAGCGGCATTGACTGCAACTACGCGCAGTTTTACCGCGCATGGTGC
AACTAAAAAGCAAAACCGCAGCAGTAGAAGAGTACAGCAGTCCCTGTGCC
TGCTGCTGTACAAGCATGGCACCGCACGTTGGGCTTGTCGACACCAACAC
GAAAACCTAAGAACACCGGCAGCAGTATGTTTGACCTTGATGAAGCCTAT
CGCTGCTATGTTAGATCATATCCTTACCACATGCCTTATTCCGGAATTCC
TGGAGCTCCGCGTACCCTGCGTAGTGAGTGTGACCGAAAAAAGATCGAGG
TATAACATAACCTCAACACACGCATGATAATAGAAGCGCTCAACCACCAT
CTTGCAACGGCTTGTCCATCCCTGGCGAAGACGCTTTACTGCTGTTAACG
ATAGTTCTTTATCGCCGCTTGTGACTCCTTTAGCATGTTGAACAGCAAAG
GGAGAAGTGCATCTATACTGTTGCATCGGCTGTGTCGCAAATGCTGTGCT
GTGCTGCTGGTATATGTTCCATGAAGAACTGCTCAAGAACCCTTGTTGTG
GTACTGTGGCAATATGAGCCTTGGGGAACTCGTCGGAGATTATTGTATCG
TTTGTTTTGTGGGAGTGGGGGGAGCCCATTCGGGCTCGGGACGTTCAACT
CAATCCGAACTCGCCACGGATTAAACGATTTTTTTTCACATGATTTGTGC
GGCAAGTTTGTTCACCACCTACCACTGCTGCTGCATATACAACGTGTGCA
TGTATGCGGCTGGCGAGTCAGTGGCTCGCACACCGAGCAGCAGCATAAAC
TGTTCGTTCGGGGCATGCTGCAGGATATCTCACACGATACATGCAGCTCA
GATTACATTGGTGCTGTTGGCGCTGCTGCCGCTGTATTGCAAGTACTTTT
ATCGCTCGCACACACCAATAACTTATCGCACAGCAGCCGTTTACCACGCA
CAACCACAAGACATACATGCAGCAGCAATAATTCGCACACAGCAGCAACT
GGGCATAACTGGGCATGATTGTTTTTGCTACTCAGCCAGGTCCTGCTGTA
CGTATGATATGATATGATATGATATGATATGATATGTGCCTTTGGATCCG
CAAGGGTGCCATACAGCTGTTCGGCAGCAGCACATACAGCAGTTTCACCA
CTGGAAAAAACAGGAGTACATTTGGTTTGAATCAGTTGTTTGTGTTTTCG
ATCCGTTCTCTGTTTGGGGTTTGGGCCGCCAAGTGGACCACTACGCCAAA
AACGATCGACAATTGGCGGTCGCACTCCTCACCACCGATGTTCTTGATGT
CGCCCGGTGTGAACCAATATATTCGCTGTTTGCTTGCTCAACTTTAAACA
GGCACGAAGGGAAATCTGTTCCAATAATCGTCAACGGCGCTCTGGCGAAC
AAGGTTCGACGACGTTTCGAAGAAAATCCGGCTCCAGTGGAACCCCATTT
GGGACGGGTGAGTGACTCGAAGAAGTGCCATCTATGTCGTGATGTGTTGT
GGCAGATTTGCGTCCGGGCAAAACAGCAACATTATCATGAGTCGAAGTAC
ACATCAACAACAGACGGTGATACCTGGGGGTTTTAGGGATGCTGCTCCTG
TTGGCGATACCCGGGAACTTGTGTAGCTTTGTTTCAGTCGGTGATACCCG
AGGACGGGGGGGAAGATAAGCGATGCCATCGCCAGTAAACCCTCGCGCCA
CACAATATACAGTTGAAATCCCCCGATTTGATACAAACCATTTCGGTGTT
CCTTGGGAGGCGGCGTAAATGTCCCTCGAATTATGCTTCACGTGGCAAAT
GGATCTCGTGGTCTGAGTTAGTTTTGTAGTTGCACTATTTAACAAGCGCT
TCTGTTCATCACTCGTAGCGGCGCCCCTATGAAGCCACTTTTGCTAATGA
TGTAACACAACCTTGTTATTGCTGGACCGATGTTGCCGCTGTGTTCCCCA
TGCAGATTGCACAACACGGACGGCACGAAGAAGTCAGGGGAACAGGAGGC
AGACGTCATGCAGGGTCTCCATGAGGAAATCTGGAGGCAGACCCAGGAAG
AAAAGAGGATTGCCAGGGATCTCGCCAAAAGCAACAAGAAGAAGACTGCT
ATCGCCAAGGCCGCCGAAGCCGCTGGGGATGAGGCCCGGGCGGTGTCCTT
GGCCGCAGGCAAGACGGAGGAAGAGTCCGACGCGGTCGCAGCCGAGGCGA
AAGCGGCGTCCTTGGCAGGCGCAGCCGCGCAGGAGAAGGCACAATTGGCG
GCCGTTGCCGGGGCAAAGGCGGCGTTGAAGGCCAAAGCTGATGCCGGGGA
TACGGCAGCGTCCTTGGCGATCGCTGCTGCGGCCAAGGCAAAGGTAGAGG
CGGAAGCACCTGGTCCCATGCCACCGAACTACGTGCACAAGTACAGCCTC
CTCTTCGCCGTGTTGGGGAGGCCGGCGGGGGCCCGGGAAACAGCACCACC
AGCTGTCTGCCGCACTTTCTTCTGGCCCAACAGCCGCACCCGCGGGGGTT
GGTGGTGAAAAGGGGAGCCGCCTTAAGTCCCCTCGATCGATCAAGGACAT
GAAGAAGGAGGGCGAGAAGGGAGCGGGAGTGCCTGTTAGCAGGGGCACGA
AGAGGAAGGAAAAAGTGGTCGACAGGAGGCAGGCAAAGCGGGAGAAGGAG
CGCGAACATATGACCAAAACCAGCGCGCGTGTTGTCGACTTGCTAGAGAA
CCCTCGTGAAAGCGAGGCCGATGTCGTCTTCATTGGCCTCGCGACGGAGT
TGAGGGCGAAAACCCGCGAGGACGCCATTCGTGCCGCCAGGGCTGCCTTG
CTGCAGGAGCGGGAGTTGGAGAAAAACGAGCTCCAGATGCAGTATAACCT
CCTACGTGGGGCCAAGCAGGAAGAGGAGGCAACGATGGTGATGAACGAGC
TCTTGGCGCTGTTGAGATCGCCTCTTCCGGAACCCTCGGCACCGGCGCCC
ATACCGACCCGTGAGCCTAGAACGGGCACGAAGACCGGAGTGTCTGCTGC
CCGTGCAGGTCAGGGAGGAGAATCCATCGATCTGACCGCCCCGGATGGCG
GCCGCTTTGAGACGGGAGGAGAAATCTCAGGATCAGGGGAGGGCGCAGCC
GGGGGCATTGGGTCCAGCGGAGAGGAGGAAGAAGAAGACCTGTCCTTCAC
TGCTGACCACCTCGAACTGCTGGGGGTCCGCAGGGCTCTGAATCCGACGC
GGGGGCTGCGGGTTCAGGTGTCGTCTTGGGAGCCGAGAGCGCATCGCATT
CACCGGTCGTGCCATATTCGGGTGCATCAGTAGTCACCGAGCTAGGGGTG
ACGAATAGGCCGGACACGACAACTGCGCCCCTCATGTCAGCATCGACGTC
AACGTCTGCCGTTGCGGCGTCACCTTCTTCGATTGGACAGGCGCAGTCCA
CGCTCGGGGACGCAGCGGAAATGCCTTCAGCGTCGGAATGGCCAGCTGCA
CGGGTGGACTCGTATTCAGCCCAGGATCGTATGGAAATAAAAAAAGCGGA
GGAGGCGTCGGCGGTCGCGTACGCCGCCCATGTCGGTCGCTACAGGCAAC
CGGCTGCGACGGCAGGATCGGCCACGGATAAGGCGGCGAGCGCGTTCACG
GCTTTCATGGCCAAGGGCGGGCCTGCGGCTGCGACGACGACGGTGATGGC
TGGCGACGGCGGGAGCGGGAGCAGGAGCGGCGGCTGCATACAGGAGAGGA
CAATCTAGAACCGGTGCGGCACAGAGCTTCAAAGGGGACACCGGACGGGG
GGGGAGGGATCATTGGTCGTTGCGAATCTCATGGGCGGTTGTTGAGCACT
GCGCTGTATGCAGCATCACGGCTTAGATTTTTGGTTGCGTGACTCGTCTC
AGATGCAATGTGAATTGGTTTCATTAATTGAGATTCTACACATGGTGATG
CCCGCCCATCCCTCTCCGATAAGCGTTTCCGCGCGCAATGACTCGTCTGT
TGGGTGACGGTACCCTTGTAAATGGAGCAAGCCAGTGGCAACCTTGCGGG
TGCTCTATGATAGCGTTGACTTTTCTGTTTTTTTATTTTTGTGCGCATTT
TATTTTTGTTGGTGTTGTTCGATTGTTTTGGGCGTTTCGTATGACTTTCA
TTAGTGTCGATGGGTAAAACACTCATCATTTCGAATACGGGCTCAGTTCT
TCCGAGTCAATTTGCTGTTGTGTTGGGGTGTTTTAGTCACTTTTGGGGTT
GGTTTTGTTTGGCTTTGTTTTGTTGTCCGTTGATCCTTCAATCTAGCACT
TCTGTTGAATGCACCGTTGATCCTTCAAACTAGCACTCACTGCTGTTGAA
TGCAGTTTTGACGAACTCCAGGGGAGGGGTAACAATCCATTACTCTACTC
AACAACAGCTGCAGATGTAGCTTTACGAAATGTTTTGGTGCCGATTAATG
AGTGAGTATGGTGTTCGCTGCACCTACTATCGAAGAGCAGCCAGAACTTC
GTTATTTTTTATTGTTAACTCGGCCGTGATATTTCAGGGCTGCGGGACTG
CTTGTAGTTCGAGAGTGTTCAGATATTCGAGCTGCAGAATTCGATGGACC
ATATGTTACTCTTGTCCTGTTTAAATACGGATGTTTTCACTTTTGTCGCT
ACGTTGGAACTTTCTTGAGGTTTTTCGTGAGTCCGAAGTTCTTGCAGGAT
TGGTCGATGGGAAAATATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:135928..140996+

>mRNA_P-littoralis_Contig79.38.1 ID=mRNA_P-littoralis_Contig79.38.1|Name=mRNA_P-littoralis_Contig79.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig79:135928..140996+ (Pylaiella littoralis U1_48)
ATGAAGAAGGAGGGCGAGAAGGGAGCGGGAGTGCCTGTTAGCAGGGGCAC
GAAGAGGAAGGAAAAAGTGGTCGACAGGAGGCAGGCAAAGCGGGAGAAGG
AGCGCGAACATATGACCAAAACCAGCGCGCGTGTTGTCGACTTGCTAGAG
AACCCTCGTGAAAGCGAGGCCGATGTCGTCTTCATTGGCCTCGCGACGGA
GTTGAGGGCGAAAACCCGCGAGGACGCCATTCGTGCCGCCAGGGCTGCCT
TGCTGCAGGAGCGGGAGTTGGAGAAAAACGAGCTCCAGATGCAGTATAAC
CTCCTACGTGGGGCCAAGCAGGAAGAGGAGGCAACGATGGTGATGAACGA
GCTCTTGGCGCTGTTGAGATCGCCTCTTCCGGAACCCTCGGCACCGGCGC
CCATACCGACCCGTGAGCCTAGAACGGGCACGAAGACCGGAGTGTCTGCT
GCCCGTGCAGGTCAGGGAGGAGAATCCATCGATCTGACCGCCCCGGATGG
CGGCCGCTTTGAGACGGGAGGAGAAATCTCAGGATCAGGGGAGGGCGCAG
CCGGGGGCATTGGGTCCAGCGGAGAGGAGGAAGAAGAAGACCTGTCCTTC
ACTGCTGACCACCTCGAACTGCTGGGGGTCCGCAGGGCTCTGAATCCGAC
GCGGGGGCTGCGGGTTCAGGTGTCGTCTTGGGAGCCGAGAGCGCATCGCA
TTCACCGGTCGTGCCATATTCGGGTGCATCAGTAG
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