mRNA_P-littoralis_Contig12.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.10.1
Unique NamemRNA_P-littoralis_Contig12.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:20107..20761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size359
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.2130792-CDS-P-littoralis_Contig12:20106..201301680789504.2130792-CDS-P-littoralis_Contig12:20106..20130Pylaiella littoralis U1_48CDSP-littoralis_Contig12 20107..20130 -
1680789504.2221477-CDS-P-littoralis_Contig12:20428..205961680789504.2221477-CDS-P-littoralis_Contig12:20428..20596Pylaiella littoralis U1_48CDSP-littoralis_Contig12 20429..20596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.230663-UTR-P-littoralis_Contig12:20596..207611680789504.230663-UTR-P-littoralis_Contig12:20596..20761Pylaiella littoralis U1_48UTRP-littoralis_Contig12 20597..20761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.10.1prot_P-littoralis_Contig12.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 20107..20596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.10.1

>prot_P-littoralis_Contig12.10.1 ID=prot_P-littoralis_Contig12.10.1|Name=mRNA_P-littoralis_Contig12.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
MVQLPPPSLKHRPFDFFFFSLARQQDTSCDYTDVFCRAAANSGQKHPITQ
GFRVVKVAHNHYEV
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mRNA from alignment at P-littoralis_Contig12:20107..20761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.10.1 ID=mRNA_P-littoralis_Contig12.10.1|Name=mRNA_P-littoralis_Contig12.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=655bp|location=Sequence derived from alignment at P-littoralis_Contig12:20107..20761- (Pylaiella littoralis U1_48)
GGCATGGTCAAATTTTCAAAATAAAGTTTACAGGGTGGACCGAAAATTGA
TTATCTCGAGGGCTATACCAACGAGCGTTCGTTCACTGACAGCGGCACGA
GAGAACTTGCGGGTACAGATGTCCTGCCTGTGCATCTCTCGATCTGCTGC
GCTTTTCGTTCCAGTATGGTGCAACTGCCACCCCCTTCCTTAAAACATCG
TCCTTTTGATTTCTTTTTTTTCTCTCTCGCACGACAACAGGATACCTCCT
GCGACTACACCGATGTGTTTTGTCGTGCGGCGGCCAACAGCGGCCAGAAA
CATCCCATCACCCAAGGGTTCCGCGTGGTCAAGGTAACTTGCGCGAGGCC
GCGCGGTGGTACCAACCTAACCGCACGCTGAACGGCAATCTGTGTCGGTC
TTAAGATCCTCCCTGGTATACTTTAGGGTGGAACTCCACGAGAAGGAGTC
TTTAAATACCCAAACATTGTTACAAGCACCAACAGCCGCAATGTTTGGCG
TGGCTCTGCCACCTTGTATTCTCTGAACGGCCTGAAAAGCCCGAAACTGA
TCCTCACCACGACCCTTCCCATCCCATCCCATCCCATCCCCTCCCCGTCC
TCCGCCTCTACTGCGGCACGGGAAAACAAAGGTGGCTCACAACCACTACG
AGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:20107..20761-

>mRNA_P-littoralis_Contig12.10.1 ID=mRNA_P-littoralis_Contig12.10.1|Name=mRNA_P-littoralis_Contig12.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig12:20107..20761- (Pylaiella littoralis U1_48)
ATGGTGCAACTGCCACCCCCTTCCTTAAAACATCGTCCTTTTGATTTCTT
TTTTTTCTCTCTCGCACGACAACAGGATACCTCCTGCGACTACACCGATG
TGTTTTGTCGTGCGGCGGCCAACAGCGGCCAGAAACATCCCATCACCCAA
GGGTTCCGCGTGGTCAAGGTGGCTCACAACCACTACGAGGTG
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