mRNA_P-littoralis_Contig79.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig79.47.1
Unique NamemRNA_P-littoralis_Contig79.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig79.47.1 vs. uniprot
Match: A0A6H5JCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ2_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 4.970e-94
Identity = 164/217 (75.58%), Postives = 181/217 (83.41%), Query Frame = 3 
Query: 1140 MDRVRSRHEGKGTTIRIVKGGGIEGLFTKQSTAKKDLIVEALVPRDKYVEDALKEQPEWRTMLAATPETARKRRAREQAAMSSAAAKDGTPKFRKNDQVRLAIIMMGEAMLTKTLASEQGPESIADFTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTANGDPAGLVEMWQSIDAKAPAEKYCAIWTAAANAANERNRVEAEGGAKGKGKAKDKG 1790
            MDR+RS+ EGK TT+RI +G GI GLFTK STAKKD +V ALV R+KYVED L EQP+WRTM+A TPE ARK+R RE    SS+AAKD TPKF K DQVRLAIIMMG  M+  TLASEQ PES+ADFTHQKGAGK+VYREAARAFM SST+++L AEISTA+GDPA LVE WQSIDAKAPA KY AIWTAAA A NERNRVEAEGG KGKGKAKD G
Sbjct:    1 MDRLRSQSEGKDTTLRIARGSGIGGLFTKVSTAKKDALVAALVSRNKYVEDDLGEQPQWRTMMATTPEGARKKREREAVTTSSSAAKDATPKFMKEDQVRLAIIMMGGTMIENTLASEQSPESVADFTHQKGAGKNVYREAARAFMESSTNIELLAEISTAHGDPADLVEKWQSIDAKAPAAKYPAIWTAAAKATNERNRVEAEGGTKGKGKAKDTG 217
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BLAST of mRNA_P-littoralis_Contig79.47.1 vs. uniprot
Match: A0A6H5KJR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR2_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.410e-43
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 3 
Query: 1482 LASEQGPESIADFTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTANGDPAGLVEMWQSIDAKAPAEKYCAIWTAAANAANERNRVEAEGGAKGKGKAKDKGEA 1796
            +  +Q PES+ADFTHQKGAGK+VYREAARAF+ SST+V+LPAEISTANGDPA LVE WQSIDAKAPA KY AIWTA A A NERNRVEAEGG KGKGKAKD G A
Sbjct:    1 MKEDQSPESVADFTHQKGAGKNVYREAARAFLESSTNVELPAEISTANGDPADLVEKWQSIDAKAPAAKYSAIWTAVAKATNERNRVEAEGGTKGKGKAKDTGGA 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig79.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCQ2_9PHAE4.970e-9475.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJR2_9PHAE1.410e-4380.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig79contigP-littoralis_Contig79:155146..158100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1798
Hectar predicted targeting categoryother localisation
Exons2
Cds size1479
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.890339-UTR-P-littoralis_Contig79:155145..1554621680791614.890339-UTR-P-littoralis_Contig79:155145..155462Pylaiella littoralis U1_48UTRP-littoralis_Contig79 155146..155462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.9066641-CDS-P-littoralis_Contig79:155462..1562661680791614.9066641-CDS-P-littoralis_Contig79:155462..156266Pylaiella littoralis U1_48CDSP-littoralis_Contig79 155463..156266 +
1680791614.9218044-CDS-P-littoralis_Contig79:157425..1581001680791614.9218044-CDS-P-littoralis_Contig79:157425..158100Pylaiella littoralis U1_48CDSP-littoralis_Contig79 157426..158100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig79.47.1prot_P-littoralis_Contig79.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig79 155463..158100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig79.47.1

>prot_P-littoralis_Contig79.47.1 ID=prot_P-littoralis_Contig79.47.1|Name=mRNA_P-littoralis_Contig79.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=493bp
MSSDSEVSTNPRAPRAQAGPGETQSHGRGFLSQPNSSSSSSSSSSSCVAG
QPNSSSSVGGSRDAPSLMYVGMTPQAMPGFNSAASNVGYYPGGVASAAAV
AAAGASFHPRHSYTFESRAPLGSPGVVQQPQLHPFVQQQQFLPQGGAPRH
QGSAGLPITLEMETGSSPPPPFIGDRTSPLVMTSPGASGSTSAGGVHVKD
EEMFSLSSPPPGGIIVGETVLLATPEKEGKDAKPLYLAQHASTPTIVRRD
RDNPPNYGDHHVGQLRQEVIRRAKMDRVRSRHEGKGTTIRIVKGGGIEGL
FTKQSTAKKDLIVEALVPRDKYVEDALKEQPEWRTMLAATPETARKRRAR
EQAAMSSAAAKDGTPKFRKNDQVRLAIIMMGEAMLTKTLASEQGPESIAD
FTHQKGAGKDVYREAARAFMNSSTSVDLPAEISTANGDPAGLVEMWQSID
AKAPAEKYCAIWTAAANAANERNRVEAEGGAKGKGKAKDKGEA
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mRNA from alignment at P-littoralis_Contig79:155146..158100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig79.47.1 ID=mRNA_P-littoralis_Contig79.47.1|Name=mRNA_P-littoralis_Contig79.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2955bp|location=Sequence derived from alignment at P-littoralis_Contig79:155146..158100+ (Pylaiella littoralis U1_48)
TCGAACATCGAACAAGCGGCGTAATCATGTGATTGGCCGTGAAAATAAAA
TGAAACAAAAGGTGGTAGGGTGTTCGAGTTTTTCTACGACGGATCTTCCA
GGGGTGATTCCGCCTAAAACTCTAACATCTTTCACAAAAACTCGAAAACC
TAACAGTCCCGCGGGCTATTGACGAAACAAATAAAGAAAAAAGAAATGGG
TGACAAAAAAAGAAGACCCGCGTCTATCGCCCCCTCTCACATCACGACAA
GAGAGAGAGGTCGACCGGGCGACCGAGAAAGAGACGACCGCAGAGCATAG
CCGCAAAACAAGCGTCTATGTCGAGCGACAGCGAGGTTTCGACTAATCCG
AGGGCCCCGCGTGCGCAAGCGGGGCCAGGTGAGACGCAATCGCACGGCCG
TGGCTTCCTGTCGCAACCAAACAGCAGCAGTAGTAGCAGCAGCAGCAGCA
GCAGCTGCGTTGCTGGACAGCCAAACAGCAGCAGTAGTGTTGGTGGTAGT
CGGGATGCTCCCTCTTTAATGTATGTGGGGATGACGCCGCAAGCAATGCC
GGGGTTCAACTCCGCGGCTTCGAACGTGGGCTACTATCCAGGAGGTGTTG
CTTCTGCTGCTGCTGTTGCTGCTGCTGGCGCCTCCTTCCATCCTCGACAC
TCGTATACTTTCGAGAGCCGTGCGCCCTTGGGTTCTCCGGGTGTAGTCCA
ACAGCCACAGCTGCACCCTTTTGTACAGCAGCAGCAATTTCTACCCCAAG
GTGGTGCACCGCGTCACCAGGGAAGCGCAGGCCTCCCCATCACCCTAGAA
ATGGAAACCGGTTCGTCGCCTCCACCGCCGTTCATCGGAGATAGGACGTC
GCCGCTTGTGATGACTTCGCCAGGAGCAAGTGGTAGCACATCTGCTGGTG
GTGTTCACGTAAAGGACGAAGAAATGTTCTCTCTATCCTCTCCTCCACCC
GGGGGGATCATCGTCGGCGAGACTGTGCTTTTGGCTACACCGGAGAAGGA
AGGCAAGGATGCGAAGCCGCTGTACCTTGCGCAGCACGCAAGCACCCCCA
CAATAGTTCGGCGGGACAGAGACAACCCTCCAAACTACGGGGACCATCAT
GTGGGGCAACTCCGACAAGAGGTGTGTACATGGTGTTGCGGTTGGTTCCG
ACACGCAAGTAACAGCAGATTCCACGACCGCTGATATCGGCGGTCGTTTG
CTTAGCTTTTGGCGGTGGCGTCCGTGTGTCTCGTGTGAAAATTATTTGGA
GCACATCAGTTTAATCGGTCGGGGAAGGTTAATTTTTCCTTCCTCCCGAC
CCAACCCTGATCTGGTGTATGCTGTGGTGTTTCTTGATTTCTATGCTTTA
TTTTTCACTCTTATTTTGTTCTGTATGCTTGGCTTTTTCTTTGGTGTTGT
TCATGCTTTATTTTATGCTCCGTACTTACCTCGCCccaCCTGCCTTGGTG
TCTTTGAACGAAGGCATCAGGCAGTGTGGGGGCGGGGTGCCTGGCTGGTG
AAAACCCGGACATGTAACACCCGGGCGGATGGTAGAAGGTACTGCGGGGA
GATCGGAACGGtTTTATAATGTGACAACAACAACAACAACAACAACAACA
ACAACATCGCGAGGCATCAGACATGTGTGCGATGCTTCAAACTGCTGTGG
AAACTTCCCACGCGACGCCAGAAAAACGAAGAACAGCAACGAACCACTTC
TGTAAGCATAGGTGCCGACGAAAATCAATGTTTGAGTGGACGTGCCCATG
CGAAGTTGATTGGTCGCACTACTGCTGTAACAAGCAGGCGAGAGATGTGT
GTGGAAGATACGGTCAATTTCCTGCAGTCGTTGTAGTTGCACCTGATTTA
CGATGGTCATGAATACACTGCTGACAtTTTGTGCTGCATCACCCCGACAG
ATACGGCGCAGTTCCTGGTGCTTTATTCTTTGGGGTATGTATGGTGGGGA
ATATGGAATGCGTGACTCCTCCCGTGTGGCTAGCTTTCTTTGGCATTTTG
GACATTTTAACATGTGCGCAAAACCTAAAATTAATAGGTGTCGCGTGCCA
CGTATGATGCATGTAGTACTGTACCGCCGGGCTCTCTTATTTTACAAAAG
TACACGCCCGTTTGGTTTGTTGGAACTCTTCAGAATATGATCATGTTCGG
GGTTACTATCAAATGGCACGGTCAAAAACGGTGCGAGTTTGAAACGGTGT
TGCTCATACCAGACAACGACTAATCGAACTCTCCTTCCCCTCGTCCCTCC
TTCCCTTCGGTTTCGGCATGTTTCTTCCAGGTCATACGCCGTGCGAAAAT
GGACCGCGTGCGAAGTCGACACGAAGGCAAGGGCACGACGATTCGGATCG
TGAAGGGCGGCGGCATCGAAGGTCTCTTCACGAAGCAGTCCACGGCGAAG
AAAGACCTGATTGTCGAGGCGTTGGTGCCACGCGACAAGTACGTCGAAGA
CGCCCTGAAGGAGCAGCCGGAATGGCGCACGATGTTGGCAGCCACCCCTG
AAACCGCGCGCAAAAGACGCGCGCGAGAGCAAGCCGCCATGTCGTCGGCT
GCAGCGAAGGACGGCACGCCGAAGTTCAGGAAAAACGACCAGGTCCGACT
GGCAATTATCATGATGGGCGAAGCCATGCTTACGAAAACACTCGCATCCG
AGCAGGGCCCGGAATCGATCGCAGACTTCACACACCAGAAGGGAGCAGGC
AAAGACGTGTACCGGGAAGCCGCGCGTGCCTTCATGAACTCGAGCACCAG
CGTCGACCTCCCAGCGGAGATTTCCACCGCCAACGGGGACCCGGCGGGCC
TCGTCGAGATGTGGCAAAGCATCGACGCCAAGGCGCCGGCGGAGAAGTAT
TGTGCGATTTGGACCGCAGCGGCGAATGCGGCGAACGAGAGGAACAGGGT
GGAAGCTGAGGGGGGGGCGAAAGGGAAAGGGAAGGCGAAGGACAAGGGCG
AGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig79:155146..158100+

>mRNA_P-littoralis_Contig79.47.1 ID=mRNA_P-littoralis_Contig79.47.1|Name=mRNA_P-littoralis_Contig79.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1479bp|location=Sequence derived from alignment at P-littoralis_Contig79:155146..158100+ (Pylaiella littoralis U1_48)
ATGTCGAGCGACAGCGAGGTTTCGACTAATCCGAGGGCCCCGCGTGCGCA
AGCGGGGCCAGGTGAGACGCAATCGCACGGCCGTGGCTTCCTGTCGCAAC
CAAACAGCAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCTGCGTTGCTGGA
CAGCCAAACAGCAGCAGTAGTGTTGGTGGTAGTCGGGATGCTCCCTCTTT
AATGTATGTGGGGATGACGCCGCAAGCAATGCCGGGGTTCAACTCCGCGG
CTTCGAACGTGGGCTACTATCCAGGAGGTGTTGCTTCTGCTGCTGCTGTT
GCTGCTGCTGGCGCCTCCTTCCATCCTCGACACTCGTATACTTTCGAGAG
CCGTGCGCCCTTGGGTTCTCCGGGTGTAGTCCAACAGCCACAGCTGCACC
CTTTTGTACAGCAGCAGCAATTTCTACCCCAAGGTGGTGCACCGCGTCAC
CAGGGAAGCGCAGGCCTCCCCATCACCCTAGAAATGGAAACCGGTTCGTC
GCCTCCACCGCCGTTCATCGGAGATAGGACGTCGCCGCTTGTGATGACTT
CGCCAGGAGCAAGTGGTAGCACATCTGCTGGTGGTGTTCACGTAAAGGAC
GAAGAAATGTTCTCTCTATCCTCTCCTCCACCCGGGGGGATCATCGTCGG
CGAGACTGTGCTTTTGGCTACACCGGAGAAGGAAGGCAAGGATGCGAAGC
CGCTGTACCTTGCGCAGCACGCAAGCACCCCCACAATAGTTCGGCGGGAC
AGAGACAACCCTCCAAACTACGGGGACCATCATGTGGGGCAACTCCGACA
AGAGGTCATACGCCGTGCGAAAATGGACCGCGTGCGAAGTCGACACGAAG
GCAAGGGCACGACGATTCGGATCGTGAAGGGCGGCGGCATCGAAGGTCTC
TTCACGAAGCAGTCCACGGCGAAGAAAGACCTGATTGTCGAGGCGTTGGT
GCCACGCGACAAGTACGTCGAAGACGCCCTGAAGGAGCAGCCGGAATGGC
GCACGATGTTGGCAGCCACCCCTGAAACCGCGCGCAAAAGACGCGCGCGA
GAGCAAGCCGCCATGTCGTCGGCTGCAGCGAAGGACGGCACGCCGAAGTT
CAGGAAAAACGACCAGGTCCGACTGGCAATTATCATGATGGGCGAAGCCA
TGCTTACGAAAACACTCGCATCCGAGCAGGGCCCGGAATCGATCGCAGAC
TTCACACACCAGAAGGGAGCAGGCAAAGACGTGTACCGGGAAGCCGCGCG
TGCCTTCATGAACTCGAGCACCAGCGTCGACCTCCCAGCGGAGATTTCCA
CCGCCAACGGGGACCCGGCGGGCCTCGTCGAGATGTGGCAAAGCATCGAC
GCCAAGGCGCCGGCGGAGAAGTATTGTGCGATTTGGACCGCAGCGGCGAA
TGCGGCGAACGAGAGGAACAGGGTGGAAGCTGAGGGGGGGGCGAAAGGGA
AAGGGAAGGCGAAGGACAAGGGCGAGGCA
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