prot_P-littoralis_Contig789.36.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig789.36.1
Unique Nameprot_P-littoralis_Contig789.36.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length174
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.36.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006084XPG/Rad2 endonucleasePRINTSPR00853XPGRADSUPERcoord: 76..95
score: 41.41
coord: 137..154
score: 29.17
coord: 25..39
score: 28.54
IPR006085XPG, N-terminalSMARTSM00485xpgn3coord: 1..102
e-value: 0.0017
score: 16.1
IPR006085XPG, N-terminalPFAMPF00752XPG_Ncoord: 6..101
e-value: 3.0E-4
score: 21.2
NoneNo IPR availableGENE3D3.40.50.1010coord: 1..165
e-value: 2.3E-22
score: 81.7
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 3..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig789contigP-littoralis_Contig789:122615..123136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig789.36.1mRNA_P-littoralis_Contig789.36.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig789 122177..123136 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig789.36.1 ID=prot_P-littoralis_Contig789.36.1|Name=mRNA_P-littoralis_Contig789.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MGTPRLLEHLKHGASEEIRLDDGKGRRLVMDGHAALHRAACRRGVAASLV
LHNRVEALGYAVAREVRMFERFSWRVTVVFDGPPPPSKRGTTVARLKERE
NARSKAIQASGNCRDSLLVKAAHFSPHVVARTACVLRSLIRGECVTSPHE
ADGQLVMMQNYYLSRQPDEEVYIW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR006085XPG_DNA_repair_N
IPR029060PIN-like_dom_sf