mRNA_P-littoralis_Contig789.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig789.36.1
Unique NamemRNA_P-littoralis_Contig789.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig789contigP-littoralis_Contig789:122177..123136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size962
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.57e-16
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size522
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.734981-UTR-P-littoralis_Contig789:122176..1226141680791614.734981-UTR-P-littoralis_Contig789:122176..122614Pylaiella littoralis U1_48UTRP-littoralis_Contig789 122177..122614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.751148-CDS-P-littoralis_Contig789:122614..1231361680791614.751148-CDS-P-littoralis_Contig789:122614..123136Pylaiella littoralis U1_48CDSP-littoralis_Contig789 122615..123136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig789.36.1prot_P-littoralis_Contig789.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig789 122615..123136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig789.36.1

>prot_P-littoralis_Contig789.36.1 ID=prot_P-littoralis_Contig789.36.1|Name=mRNA_P-littoralis_Contig789.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MGTPRLLEHLKHGASEEIRLDDGKGRRLVMDGHAALHRAACRRGVAASLV
LHNRVEALGYAVAREVRMFERFSWRVTVVFDGPPPPSKRGTTVARLKERE
NARSKAIQASGNCRDSLLVKAAHFSPHVVARTACVLRSLIRGECVTSPHE
ADGQLVMMQNYYLSRQPDEEVYIW
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mRNA from alignment at P-littoralis_Contig789:122177..123136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig789.36.1 ID=mRNA_P-littoralis_Contig789.36.1|Name=mRNA_P-littoralis_Contig789.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=960bp|location=Sequence derived from alignment at P-littoralis_Contig789:122177..123136+ (Pylaiella littoralis U1_48)
GATTCGGGGTAAATATTCCAGCGGATGCAGAGAAAAGCGTACGTCCACCT
GTCGTGTGTAAAATCTAGACAGCAGCTCTTTAACTTTTATACGGTATATT
TGTGTGTGTGATACTTGTGTTCAGATGTCGTGTTTGATTTTTTCTTACAA
GCACATGCGCCTCTCTCCAGGCTAGGGTCTGGAGTAGAGAAGCAGCGAAC
CCAAATAACAAAACGCATACCAGTGTTTCGATAACTCTTCAGATAATAAT
GTACCGTCAATCGCATCCCTGAGGTTATCATGGGGTTACAGTAGTACAAC
TTAGAGAAAGAAACATCCTCACACACCAGGCGTAGTTTTTGTTTTGTTGT
TGTGAAAATTTAAAAACTACAGCAGTGACAGTCCCGTGCTTTCAGGAGTG
TTGGCCCAGGCGTGAAACCAAAGCACATCGTGTGCGAAATGGGAACGCCT
AGACTGCTGGAGCACCTGAAACACGGTGCATCGGAGGAGATCCGTCTGGA
TGATGGAAAAGGTCGGCGTTTGGTGATGGATGGGCATGCAGCGTTGCATC
GGGCGGCCTGTAGGAGAGGTGTAGCAGCGAGTCTGGTCTTGCACAACAGA
GTTGAGGCACTCGGCTATGCTGTAGCTCGAGAGGTGCGGATGTTTGAGAG
ATTCAGCTGGAGGGTTACAGTCGTATTCGATGGCCCCCCCCCGCCTTCTA
AGAGAGGGACAACGGTAGCCCGATTGAAGGAGAGAGAGAATGCACGCAGC
AAAGCCATCCAGGCATCAGGAAACTGTAGAGATTCTCTCTTGGTGAAGGC
GGCCCACTTTTCACCTCATGTCGTGGCTAGAACGGCGTGCGTCCTTCGTT
CTCTCATCCGAGGCGAATGTGTCACTTCCCCTCACGAGGCAGACGGACAG
CTCGTCATGATGCAGAACTACTACCTGTCCCGGCAACCCGACGAGGAGGT
TTACATCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig789:122177..123136+

>mRNA_P-littoralis_Contig789.36.1 ID=mRNA_P-littoralis_Contig789.36.1|Name=mRNA_P-littoralis_Contig789.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig789:122177..123136+ (Pylaiella littoralis U1_48)
ATGGGAACGCCTAGACTGCTGGAGCACCTGAAACACGGTGCATCGGAGGA
GATCCGTCTGGATGATGGAAAAGGTCGGCGTTTGGTGATGGATGGGCATG
CAGCGTTGCATCGGGCGGCCTGTAGGAGAGGTGTAGCAGCGAGTCTGGTC
TTGCACAACAGAGTTGAGGCACTCGGCTATGCTGTAGCTCGAGAGGTGCG
GATGTTTGAGAGATTCAGCTGGAGGGTTACAGTCGTATTCGATGGCCCCC
CCCCGCCTTCTAAGAGAGGGACAACGGTAGCCCGATTGAAGGAGAGAGAG
AATGCACGCAGCAAAGCCATCCAGGCATCAGGAAACTGTAGAGATTCTCT
CTTGGTGAAGGCGGCCCACTTTTCACCTCATGTCGTGGCTAGAACGGCGT
GCGTCCTTCGTTCTCTCATCCGAGGCGAATGTGTCACTTCCCCTCACGAG
GCAGACGGACAGCTCGTCATGATGCAGAACTACTACCTGTCCCGGCAACC
CGACGAGGAGGTTTACATCTGG
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