mRNA_P-littoralis_Contig789.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig789.27.1
Unique NamemRNA_P-littoralis_Contig789.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 3.630e-65
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQKR 417
            ++ LDIEWEISAAGAP NPPATIQLAAGK VVIFHVLHGQR+VP ELPD LV+LLED K+TKTGVGIKGDCT+L++ YGVEV+  VDLRSLAVERKVE+GLRRGLADLCVHLLG+ LPKD +VR S+WN  +LS +QKR
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKR 391          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.620e-20
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHG-QRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNT 390
            ++GLD EWE S AG   NP +T+QL+        F +  G ++      P  L  LLE+  + K GV I  D T L   YG+EV+  VDLR+ A +  VE    R LA +   LLGR LPKD  +R+SRW++
Sbjct:  114 VLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRSSRWSS 244          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: UPI0011D1BD43 (Werner Syndrome-like exonuclease n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BD43)

HSP 1 Score: 88.6 bits (218), Expect = 6.380e-19
Identity = 57/138 (41.30%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGL-RRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            ++GLDIEW  +     V+P A +QL  G   +IF  LH +  VP  L   L  L    + T  GVGIK D TKL + YG+ VSR+VDLR+LA+ER         GL  L   LL R L K   +  SRW+   L+  Q
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVAILQLCVGHSCLIFQFLHAE-CVPASLHAFLANL----RYTFVGVGIKDDATKLRDDYGLAVSRMVDLRALAMERLRNPSFGHMGLKKLVKVLLRRELEKPKEITLSRWDDEALTARQ 176          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A059CJD2_EUCGR (3'-5' exonuclease domain-containing protein (Fragment) n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CJD2_EUCGR)

HSP 1 Score: 87.0 bits (214), Expect = 1.320e-18
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            ++GLDIEW  +     V+P AT+QL  G+  +IF +LH +  +PG L   L  L      T  GVGIK D  KL + YG+ VSR+VDLR LAV R   + L   GL  L   +L + L K   V  S+W+   L+  Q
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVGRSCLIFQILHAEY-IPGSLHAFLGNL----NYTFVGVGIKDDAMKLRDDYGLTVSRMVDLRGLAVGRWRNLSLGYMGLKKLVKVILRKDLEKPKDVTLSQWDDKVLTDRQ 176          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.090e-18
Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGK-VVVIFHVLHGQRAV-PGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            ++G+D EWE    G+      T+QLA       +FH+  G R   P      L  LL D  +TK GV +KGD ++L   YGVE   +VDLRS A    V++  R  LA +    LG++L K+ SVR SRW+ AEL+Q Q
Sbjct:   89 VLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A7J7HIL9_CAMSI (3'-5' exonuclease domain-containing protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7HIL9_CAMSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.570e-17
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            I+GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K   +  SRW+   L  EQ
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A4S4EXV1_CAMSI (3'-5' exonuclease domain-containing protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4EXV1_CAMSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.180e-17
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            I+GLDIEW  +   +  NP AT+QL  G+  +IF +L+       E+P  L++ L +   T  GVGI  D  KL   YG+ V+  VDLR+LA +  +      GL  +   +LG+ + K   +  SRW+   L  EQ
Sbjct:   62 IVGLDIEWRPNDRYSD-NPAATLQLCVGRRCLIFQLLYSP-----EIPQSLIDFLNNPIYTFVGVGINSDVEKLIEDYGLSVATTVDLRTLAADCGMTELRNAGLKTMAREVLGKVIEKPQRITRSRWDNEWLYPEQ 192          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.730e-16
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLH---GQRAVPGELPDELVELLEDDKVTK-TGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            ++GLD EWE +  GA  NP +T+QL+          LH    +      +P  L  LLE+    +  GV +  D + L   YGV+V+ ++D+R+ A E  VE    R LA +   L+G+ LPKD ++R SRW+   L+ EQ
Sbjct:  154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A059CK88_EUCGR (3'-5' exonuclease domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CK88_EUCGR)

HSP 1 Score: 79.7 bits (195), Expect = 9.130e-16
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLR-RGLADLCVHLLGRTLPKDSSVRTSRWNTAELS 402
            ++GLDIEW  +     V+P AT+QL      +IF +LH +      +P  L   L +   T  GVGIK D  KLS+ +G+ VSR+VDLR LAV R     L   GL  L   +L + L K   +  S W+   L+
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVATLQLCVAHSCLIFQILHAEY-----VPASLHAFLGNLDYTFVGVGIKDDAMKLSDDFGLVVSRMVDLRGLAVGRWRNPSLGYMGLKKLVKVVLRKDLEKPKEITLSHWDEKTLT 173          
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Match: A0A8B8NFB3_9MYRT (Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NFB3_9MYRT)

HSP 1 Score: 75.5 bits (184), Expect = 7.570e-14
Identity = 49/137 (35.77%), Postives = 65/137 (47.45%), Query Frame = 1
Query:    4 IGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRR-GLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQ 411
            +G DI+W  S A    +P ATI L  G+  +++ +L  +      LP  L   L D +   TGV I  D  KLS  YG+EV + VDL  LA        LRR GLA L   L GR L     +   +W+   L+  Q
Sbjct:   56 VGFDIKWRPSFARGVRHPVATIHLCIGRCCLVYQILRARC-----LPRSLYLALRDPRFVFTGVRIAPDAAKLSEDYGLEVKKAVDLGKLAARETNRRELRRAGLATLVRELKGRDLKIPREIALGKWDARRLTPRQ 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.630e-6578.423'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI6.620e-2040.91Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
UPI0011D1BD436.380e-1941.30Werner Syndrome-like exonuclease n=2 Tax=Syzygium ... [more]
A0A059CJD2_EUCGR1.320e-1840.583'-5' exonuclease domain-containing protein (Fragm... [more]
A0A6H5JRJ6_9PHAE2.090e-1840.293'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7J7HIL9_CAMSI3.570e-1735.773'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A4S4EXV1_CAMSI4.180e-1735.773'-5' exonuclease domain-containing protein n=3 Ta... [more]
A0A6H5JCK3_9PHAE4.730e-1635.463'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A059CK88_EUCGR9.130e-1637.783'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A8B8NFB3_9MYRT7.570e-1435.77Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig789contigP-littoralis_Contig789:94620..95039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog981085.XP_010111221.1
PFAMsDNA_pol_A_exo1
Model size420
Max annot lvl35493|Streptophyta
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
Exons1
Evalue2.25e-23
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota,37U7J@33090|Viridiplantae,3GIS0@35493|Streptophyta,4JVWJ@91835|fabids
EC3.1.11.1
DescriptionWerner Syndrome-like
Cds size420
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.6351273-CDS-P-littoralis_Contig789:94619..950391680791614.6351273-CDS-P-littoralis_Contig789:94619..95039Pylaiella littoralis U1_48CDSP-littoralis_Contig789 94620..95039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig789.27.1prot_P-littoralis_Contig789.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig789 94620..95039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig789.27.1

>prot_P-littoralis_Contig789.27.1 ID=prot_P-littoralis_Contig789.27.1|Name=mRNA_P-littoralis_Contig789.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
IIGLDIEWEISAAGAPVNPPATIQLAAGKVVVIFHVLHGQRAVPGELPDE
LVELLEDDKVTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVG
LRRGLADLCVHLLGRTLPKDSSVRTSRWNTAELSQEQKR*
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mRNA from alignment at P-littoralis_Contig789:94620..95039-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig789.27.1 ID=mRNA_P-littoralis_Contig789.27.1|Name=mRNA_P-littoralis_Contig789.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig789:94620..95039- (Pylaiella littoralis U1_48)
ATCATCGGCTTGGATATCGAGTGGGAGATATCCGCAGCCGGCGCACCAGT AAATCCACCCGCCACGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATAT TTCATGTCTTGCATGGCCAGCGTGCGGTGCCAGGCGAGCTGCCCGACGAG CTGGTGGAGTTATTGGAGGACGACAAAGTGACAAAGACGGGGGTCGGAAT AAAGGGAGACTGTACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTC GGGTTGTGGATCTGCGCTCTCTGGCGGTGGAGCGAAAAGTAGAGGTGGGG CTCAGGCGGGGGCTGGCTGACTTGTGTGTTCACCTTCTTGGGAGGACGTT GCCCAAGGACTCCTCCGTTCGCACTTCTAGGTGGAACACGGCTGAGCTAT CTCAGGAACAGAAAAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig789:94620..95039-

>mRNA_P-littoralis_Contig789.27.1 ID=mRNA_P-littoralis_Contig789.27.1|Name=mRNA_P-littoralis_Contig789.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig789:94620..95039- (Pylaiella littoralis U1_48)
ATCATCGGCTTGGATATCGAGTGGGAGATATCCGCAGCCGGCGCACCAGT
AAATCCACCCGCCACGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATAT
TTCATGTCTTGCATGGCCAGCGTGCGGTGCCAGGCGAGCTGCCCGACGAG
CTGGTGGAGTTATTGGAGGACGACAAAGTGACAAAGACGGGGGTCGGAAT
AAAGGGAGACTGTACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTC
GGGTTGTGGATCTGCGCTCTCTGGCGGTGGAGCGAAAAGTAGAGGTGGGG
CTCAGGCGGGGGCTGGCTGACTTGTGTGTTCACCTTCTTGGGAGGACGTT
GCCCAAGGACTCCTCCGTTCGCACTTCTAGGTGGAACACGGCTGAGCTAT
CTCAGGAACAGAAAAGGTGA
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