mRNA_P-littoralis_Contig789.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig789.25.1
Unique NamemRNA_P-littoralis_Contig789.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 1.570e-155
Identity = 261/458 (56.99%), Postives = 303/458 (66.16%), Query Frame = 1
Query:   16 VDVMGDLPAAELEEFQFLKVAGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGE-VPCPCI--------------------------------------------------------------------------------------------VRDTMRPVRLQEGPVRNHLRLPDDVGGAATAVAQPWVLQPPDGFEFPTQL 1104
            +DV  D  +AE+EE  FLKVAGLVVKLD FHAMQR+SKLILKSHGAC AYLARLRDAFF +NAEDLAAVEAAL QAGMS++EV+ KK KDW YFLKRCRR++P PAEL++RFDLVN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSD+P++AL+FEAGKD+E L  L  C R    LEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QPMLEAI+R+TSKLYG AKY  WLPTSAY DTGER GFVRSIF SN  GGG   + EILGG +N G++P    E VP P +                                                                                            +RDT+RP R ++ P+R HLR P DVGG A  +AQPW+L+ P+GF+ P QL
Sbjct:  680 LDVTADTSSAEVEELLFLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWKAHHEQVNMRDTLRPARGRDAPIREHLRAPGDVGGPAGGLAQPWILEAPEGFQMPEQL 1137          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 4.360e-138
Identity = 220/330 (66.67%), Postives = 259/330 (78.48%), Query Frame = 1
Query:   13 IVDVMGDLPAAELEEFQFLKVAGLVVKLDAFH--AMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGE-VPCPCIVRDTMRPVRLQ 987
            ++DV  D+ +AE+EE  FLK+  L  +  A    A   +SKLILKSHGAC AYLARLRD FF +NAEDLAAVEAAL QAGMS++EV+ KK KDW  FLKRCRR++P PAEL+KRFD+VN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSDAP++AL+FEAGKD+E L  L  C R    LEG+HLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QP+LEAI+R+TSKLYG AKY  WLPTSAY DTGER GFVRSIF S  GGGG   + EILGG +N  ++P S  E VP P +     R  ++Q
Sbjct:  279 LLDVTADMSSAEVEELLFLKLKALDQRNYALLRLAAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAENSSMDPASVEEAVPLPELTGSAARLAKMQ 608          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 1.130e-96
Identity = 157/228 (68.86%), Postives = 183/228 (80.26%), Query Frame = 1
Query:  313 RMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNCGLEPPSGGE-VPCPCIVRDTMRPVRLQ 987
            R++P PAEL++RFDLVN +YGGL+ KKTK+PLFRAEALEA+KRLRVHI+ DCCSD+P++AL+FEAGKD+E L  L  C R    LEGYHLHMRLLVAWC+SPRLAHLLLLE+NYRWNLRQS+ NRGL EAVGGFY QPMLEAI+R+TSKLYG AKY  WLPTSAY DTGER GFVRSIF SN  GGG   + EILGG +N G++P    E VP P +     R  ++Q
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQ 433          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 212 bits (540), Expect = 1.550e-58
Identity = 114/236 (48.31%), Postives = 152/236 (64.41%), Query Frame = 1
Query:   82 LVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*-ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDW 783
            L V+LD FHAM R++K +LKSHGA   ++ARLRDAFF I+ +DL  V AAL  AG+S DE++ KK  DWA+FLK C R++P   EL+KR+D V   +  ++  KT +PLFR+   + V+ LR HI   C SD PD  L+F  G+ S+   +  C+R   + EGYH HMR LL  +  SP L HLLLLE N+RWN+R ++ NRGL    GGFY Q +L+ I R +S L  +  Y  W
Sbjct:  433 LKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQGLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.320e-53
Identity = 113/268 (42.16%), Postives = 164/268 (61.19%), Query Frame = 1
Query:   76 AGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL---AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*-ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAK-YPDWLPTSAYADTGERCGFVRSIFASNGGG 861
            + L V+LD FHA+QR+SKL  KSHGA   ++ARLRDA F +N +D+   +AVE AL   GM+ + V   K K+W +F++ CRR++P    L++RF+LV + +  +V  K+ + L R  A +AV+ LR HI   C SD     L++ +GK+S       C R     EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VG F+ Q  +E I+R T+  Y ++  +P+W+     ADTGE+ G   S++    GG
Sbjct:  174 SALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 441          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 5.580e-49
Identity = 109/267 (40.82%), Postives = 160/267 (59.93%), Query Frame = 1
Query:   76 AGLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL---AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAK-YPDWLPTSAYADTGERCGFVRSIFASNGGG 861
            + L V+LD FHA+QR+SKL  KSHGA   ++ARLRDA F +N +D+   +AVE AL   GM+ + V   K K+W +F++ CRR++P    L++RF+LV + +  +V  K+ + L R  A +AV+ LR HI   C SD     L++   K + +            EGYH ++R LL  +C SP LAH +LLE NYRWN+R ++ NRGL   VG F+ Q  +E I+R T+  Y ++  +P+W+     ADTGE+ G   S++    GG
Sbjct:  174 SALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYT--KSAGITTRRCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 438          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.100e-48
Identity = 99/222 (44.59%), Postives = 143/222 (64.41%), Query Frame = 1
Query:   88 VKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*A-LEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVT 747
            V+LD FHA+ RLS+ I K HGA    +ARLRDA F +N +D+  +E  L + GMS  +V   K +DW+YFL++CRR++PPP+EL+KRFD V + +G  V   +K+ L R ++++AV  LR HIV  C SD    A+++  GK ++      C R    +EGYH ++R LL ++C SP LA  +LLE N+RWNL+  + NRGL   +G  Y Q ++E I+R T
Sbjct:  545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.990e-48
Identity = 113/289 (39.10%), Postives = 163/289 (56.40%), Query Frame = 1
Query:   88 VKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDL-------------AAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSE-LYDLSLCSRH*ALEGYHLHMR-LLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKL-YGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDN 906
            V+LD FH + R+S++  KSHGA   ++ARLRDA F +N +D+              +VE  L   GM  +EV     ++W++FL+  RR++P    L+KRFD V + +GG V   + + L R +A++AV++LR HI  DC SD    A++F  GK+   L D         +EGYH ++R LL ++C SP LA  +LLE NYRWNLR  I NRGL  A+GG Y Q ++E+I+R T+     +  +P+W       DTGER G  RS++     G       E+ G  DN
Sbjct:  488 VRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDG-------EVWGIADN 769          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.090e-41
Identity = 97/255 (38.04%), Postives = 140/255 (54.90%), Query Frame = 1
Query:   79 GLVVKLDAFHAMQRLSKLILKSHGACGAYLARLRDAFFTINAEDLAAVEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*ALEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLY-GNAKYPDWLPTSAYADTGERCGFVRSI 840
             L V+LD FHA+QR+S+L  KSHGA   ++ARLRDA F +N +D+  VE AL   GM+ + V   K K+W YFL+ CRR++P    L++RF+ V   +  +V  K+ + L R +A++AV +LR HI  DC SD     L++  G+++       C R      Y                      E NYRWN+R ++ NRGL   VG F+ Q  +E I+R TS  Y  N  +P+W+     ADTGE+ G  +S+
Sbjct:  497 ALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTRRCVRG---TNYT---------------------EFNYRWNIRMAVKNRGLPREVGEFFDQFEIEIIQRETSSWYPDNPLFPEWISALDAADTGEKSGLSQSL 727          
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 8.640e-25
Identity = 79/231 (34.20%), Postives = 115/231 (49.78%), Query Frame = 1
Query:  220 VEAALLQAGMSQDEVDIKKTKDWAYFLKRCRRMLPPPAELVKRFDLVNKIYGGLVGKKTKKPLFRAEALEAVKRLRVHIVEDCCSDAPDQALHFEAGKDSELYDLSLCSRH*A-LEGYHLHMRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLEAIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPMEEILGGEDNC 909
            VE  L   GM+  + +  K  +W++FLKRCRR++PPP+EL+K FD V + +G  V   +K+ L R ++++AV+ LR HIV  C SD    A+++  GK ++      C R    +EGYHL      ++  SP LA  +LLE N+RWNL+  + NR          + P                 +P W       DTGER G  RS++     GG  A      G E +C
Sbjct:  837 VEKVLECRGMTPAQAEQVKDHNWSFFLKRCRRLVPPPSELLKPFDKVVEEFGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKTTDGLVRYRCVRGTNDVEGYHL-----ASYSASPALAQSVLLEFNFRWNLKMMVKNRD---------WDPSFPV-------------FPQWQAAVDSVDTGERSGLGRSLW-----GGENAKAWNGAGHEASC 1035          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.570e-15556.993'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE4.360e-13866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE1.130e-9668.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG1.550e-5848.313'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE1.320e-5342.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE5.580e-4940.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI2.100e-4844.593'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE6.990e-4839.103'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI1.090e-4138.04Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5K4M0_9PHAE8.640e-2534.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig789contigP-littoralis_Contig789:91609..93781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIV1
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size1215
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categorysignal peptide
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons5
Evalue6.63e-10
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size636
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig789.25.1prot_P-littoralis_Contig789.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig789 91609..92834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.4174514-CDS-P-littoralis_Contig789:91608..918841680791614.4174514-CDS-P-littoralis_Contig789:91608..91884Pylaiella littoralis U1_48CDSP-littoralis_Contig789 91609..91884 -
1680791614.4343967-CDS-P-littoralis_Contig789:92306..925071680791614.4343967-CDS-P-littoralis_Contig789:92306..92507Pylaiella littoralis U1_48CDSP-littoralis_Contig789 92307..92507 -
1680791614.4477725-CDS-P-littoralis_Contig789:92675..928341680791614.4477725-CDS-P-littoralis_Contig789:92675..92834Pylaiella littoralis U1_48CDSP-littoralis_Contig789 92676..92834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791614.462928-UTR-P-littoralis_Contig789:92834..930991680791614.462928-UTR-P-littoralis_Contig789:92834..93099Pylaiella littoralis U1_48UTRP-littoralis_Contig789 92835..93099 -
1680791614.4792597-UTR-P-littoralis_Contig789:93257..934991680791614.4792597-UTR-P-littoralis_Contig789:93257..93499Pylaiella littoralis U1_48UTRP-littoralis_Contig789 93258..93499 -
1680791614.4896588-UTR-P-littoralis_Contig789:93709..937811680791614.4896588-UTR-P-littoralis_Contig789:93709..93781Pylaiella littoralis U1_48UTRP-littoralis_Contig789 93710..93781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig789.25.1

>prot_P-littoralis_Contig789.25.1 ID=prot_P-littoralis_Contig789.25.1|Name=mRNA_P-littoralis_Contig789.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=212bp
MRLLVAWCLSPRLAHLLLLEHNYRWNLRQSINNRGLGEAVGGFYYQPMLE
AIERVTSKLYGNAKYPDWLPTSAYADTGERCGFVRSIFASNGGGGGIAPM
EEILGGEDNCGLEPPSGGEVPCPCIVRDTMRPVRLQEGPVRNHLRLPDDV
GGAATAVAQPWVLQPPDGFEFPTQLPALPAAGEQGGSSAGAAAAGSGDQG
ASAGSGAVTGAP
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mRNA from alignment at P-littoralis_Contig789:91609..93781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig789.25.1 ID=mRNA_P-littoralis_Contig789.25.1|Name=mRNA_P-littoralis_Contig789.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2173bp|location=Sequence derived from alignment at P-littoralis_Contig789:91609..93781- (Pylaiella littoralis U1_48)
GACAAGGCAGAGATTGTTGACGTGATGGGAGACTTGCCTGCCGCAGAGCT TGAAGAGTTTCAATTTCTCAAGGTGCGAACCATAACGATAAACTGTTGAA CCTATATTTTTGTTTTCAAGTCTAAGAAGTTCATGTGTTTGACAACATGC ATGCCCTAGGTTCGGTGAAATATTGTATTGTACAACGATGTGTTTTTTTT TCCAGGTTGCTGGGCTCGTTGTGCGTTCTCTATCTAAGTTCGGTGAAGGT AGTGTTTTTGACAACACCCTTTTTTTTTTCAGGTTGCTGGGCTCGTTGTG AAGCTTGATGCTTTCCATGCAATGCAGCGGCTAAGCAAGCTCATCCTCAA GAGCCACGGCGCGTGCGGTGCGTACTTAGCACGGTTGAGAGATGCCTTTT TCACGATAAACGCAGAAGATCTCGCTGCCGTGGAAGCGGCGCTATTGCAG GCGGGGATGAGCCAAGATGAGGTAGACATCAAGAAGACGAAGGACTGGGC TTACTTCCTCAAACGGTGCCGAAGGTGACCCATTTGTTCCCTAGCAATGA ATCTGTAATTTGTTCTGGCAGTACTCACCGTATTCACCACAGCATGTGAA AGGAAAACTGAATGTCCGAGCACGTTGTCCCTCGCGGATGCACTGCTGTC TTGCTCTTCCCTCTCGCTTTTGCGGTCGGCAGGATGCTCCCGCCACCAGC AGAGCTTGTCAAGCGCTTTGACTTAGTGAACAAGATTTATGGTGGGCTTG TTGGCAAGAAGACGAAGAAGCCCCTGTTTCGGGCGGAGGCGCTGGAGGCC GTCAAGCGTCTCCGAGTACACATCGTGGAAGATTGCTGTAGTGACGCCCC GGACCAAGCGCTACACTTTGAGGCGGGCAAGGATTCAGAGTTGTACGATT TATCACTGTGTTCGAGGCACTAAGCCCTAGAGGGGTACCACTTGCACATG CGTTTGTTGGTCGCATGGTGTTTGTCGCCCAGGCTGGCTCACCTCCTGCT TCTTGAGCACAACTACAGGTGGAACCTACGCCAGAGCATCAACAACCGCG GACTTGGCGAGGCTGTGGGGGGATTCTACTACCAACCAATGCTCGAGGCC ATTGAGGTATGCCACCACCCAAGCCGCTGTTGTTCCCACGATCGCGCATG CTGACCCAAGCTCACATTTAGTTGAAGGTCTAGATAGAAAGGTGCTTGAT TTCAATATGCACCAAAGCGAGCTCTTCCCCTCACCATATTTCCGCATGTT TCACCTGTATTTTCTTTTAAACAGAGAGTGACTTCAAAGCTGTACGGCAA CGCGAAGTACCCTGACTGGCTACCGACAAGCGCGTACGCGGACACAGGGG AGCGCTGTGGATTTGTTCGGAGTATTTTTGCGTCGAACGGAGGTGGGGGA GGGATCGCCCCGATGGAGGAAATCCTTGGAGGGGAAGACAACTGCGGATT GGAACCCCCCTCAGGGGGAGAGGTAATCCCGCTTCCCGAGTTAACGGGGT CGGCTGCCTCCCTTGCAAAGATGCAGGGAGTGCAAGTACCGCACGTGCCA GTTTCCAGTCAGCTGAAATTAAGAAGTTCAATCGTACGTGGATGAAGTTT GTGGACCCGTCGCGGAAGACGTCGGTGGTAGACTTTGACCGCTTTGCGTG GGAATGGAACAAGACCGTGTCGGTCATGGAGGAGGAGGACGCCGCCACCA TCATCCCTATTTTTATGAAGACGGCTGTACAACTAAAGTCATACTGGAAT GAGTGAGTGTAACATGCTTCGTTTATTTTTGCATATAATCCAGTTCGGTA GTAGAATTACCATCAGCTGTTCGTTAGTTCCTAGCGGACCAGCGTACCAA GCGTAAAGCCTTGCTTAATAATTCTCAACTTTGCTGACACGTCCCCTCCA TGCCCGTGTATCGTAAGGGATACGATGCGACCTGTCCGCCTACAAGAAGG TCCCGTTAGGAACCACCTCCGACTTCCGGACGATGTCGGGGGTGCTGCAA CCGCCGTGGCGCAGCCTTGGGTGTTGCAGCCGCCGGATGGCTTCGAATTC CCTACACAACTGCCGGCCCTCCCGGCGGCTGGGGAGCAGGGGGGGTCATC AGCTGGTGCTGCGGCTGCAGGTTCTGGAGATCAGGGGGCGTCAGCGGGTA GTGGTGCTGTCACCGGTGCGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig789:91609..93781-

>mRNA_P-littoralis_Contig789.25.1 ID=mRNA_P-littoralis_Contig789.25.1|Name=mRNA_P-littoralis_Contig789.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=636bp|location=Sequence derived from alignment at P-littoralis_Contig789:91609..93781- (Pylaiella littoralis U1_48)
ATGCGTTTGTTGGTCGCATGGTGTTTGTCGCCCAGGCTGGCTCACCTCCT
GCTTCTTGAGCACAACTACAGGTGGAACCTACGCCAGAGCATCAACAACC
GCGGACTTGGCGAGGCTGTGGGGGGATTCTACTACCAACCAATGCTCGAG
GCCATTGAGAGAGTGACTTCAAAGCTGTACGGCAACGCGAAGTACCCTGA
CTGGCTACCGACAAGCGCGTACGCGGACACAGGGGAGCGCTGTGGATTTG
TTCGGAGTATTTTTGCGTCGAACGGAGGTGGGGGAGGGATCGCCCCGATG
GAGGAAATCCTTGGAGGGGAAGACAACTGCGGATTGGAACCCCCCTCAGG
GGGAGAGGTACCATGCCCGTGTATCGTAAGGGATACGATGCGACCTGTCC
GCCTACAAGAAGGTCCCGTTAGGAACCACCTCCGACTTCCGGACGATGTC
GGGGGTGCTGCAACCGCCGTGGCGCAGCCTTGGGTGTTGCAGCCGCCGGA
TGGCTTCGAATTCCCTACACAACTGCCGGCCCTCCCGGCGGCTGGGGAGC
AGGGGGGGTCATCAGCTGGTGCTGCGGCTGCAGGTTCTGGAGATCAGGGG
GCGTCAGCGGGTAGTGGTGCTGTCACCGGTGCGCCT
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