mRNA_P-littoralis_Contig1199.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1199.5.1
Unique NamemRNA_P-littoralis_Contig1199.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1199.5.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.250e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 ASSPLPVLSVKIPDLRPGATVFLGDSGAAITGVDDGEHVYNRREPLPAERYVQVANGQCL 204
            A  P  V++   P+ RPGATVF+GDSGA I  V  GE VYNR EP P ER + V +G C+
Sbjct:   72 ALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACM 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1199.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE1.250e-1153.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1199contigP-littoralis_Contig1199:21771..21974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.0941093-CDS-P-littoralis_Contig1199:21770..219741680789504.0941093-CDS-P-littoralis_Contig1199:21770..21974Pylaiella littoralis U1_48CDSP-littoralis_Contig1199 21771..21974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1199.5.1prot_P-littoralis_Contig1199.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1199 21771..21974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1199.5.1

>prot_P-littoralis_Contig1199.5.1 ID=prot_P-littoralis_Contig1199.5.1|Name=mRNA_P-littoralis_Contig1199.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MFAASPPRASSPLPVLSVKIPDLRPGATVFLGDSGAAITGVDDGEHVYNR
REPLPAERYVQVANGQCL
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mRNA from alignment at P-littoralis_Contig1199:21771..21974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1199.5.1 ID=mRNA_P-littoralis_Contig1199.5.1|Name=mRNA_P-littoralis_Contig1199.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1199:21771..21974- (Pylaiella littoralis U1_48)
ATGTTTGCTGCTTCCCCTCCGCGAGCGTCTTCGCCTCTGCCTGTCCTGTC
CGTGAAGATTCCCGACCTTAGGCCTGGCGCGACGGTGTTCCTCGGTGACT
CTGGCGCGGCAATTACGGGGGTGGACGACGGGGAACACGTGTACAATCGT
CGTGAGCCGCTGCCTGCAGAGCGGTATGTGCAGGTGGCAAACGGTCAGTG
CTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1199:21771..21974-

>mRNA_P-littoralis_Contig1199.5.1 ID=mRNA_P-littoralis_Contig1199.5.1|Name=mRNA_P-littoralis_Contig1199.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1199:21771..21974- (Pylaiella littoralis U1_48)
ATGTTTGCTGCTTCCCCTCCGCGAGCGTCTTCGCCTCTGCCTGTCCTGTC
CGTGAAGATTCCCGACCTTAGGCCTGGCGCGACGGTGTTCCTCGGTGACT
CTGGCGCGGCAATTACGGGGGTGGACGACGGGGAACACGTGTACAATCGT
CGTGAGCCGCTGCCTGCAGAGCGGTATGTGCAGGTGGCAAACGGTCAGTG
CTTG
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