mRNA_P-littoralis_Contig789.14.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5JDB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB4_9PHAE) HSP 1 Score: 251 bits (641), Expect = 2.560e-72 Identity = 130/257 (50.58%), Postives = 158/257 (61.48%), Query Frame = 3
Query: 444 YVFKTCTGVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSRLVKQGEGPEAREVMLWPATREVAG-----EKEQCMHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVTPLMRTPAIPLPPGWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
Y+ + G+S T H W+Q +GFRWRRHRKCVY DGHNRPD + R YV M + T +L K GEGPEA EV LWPA E AG E MHV+L GEC WEK H+ TSG + E+++LW T R PA PLPPG+ L P++VMEV+YHDECA+K+ND G WE AVM SDLIGEERGQ++IP V+ +M E G +P ME+ D RSDTY GRC PC+EYP+G
Sbjct: 112 YMEEGARGISFDTVHRWLQDLGFRWRRHRKCVYADGHNRPDNIRRRMGYVTEMQEHQKRTV---KLAKIGEGPEAEEVALWPAVFESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHDECAYKQNDSGGAAWEXXXXXXXXXXXXXXAAVMVSDLIGEERGQLDIPAEVYAIMQEHGTMPKMEITDEGATLSRSDTYVGRCKPCEEYPDG 365
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE) HSP 1 Score: 251 bits (641), Expect = 6.360e-70 Identity = 137/283 (48.41%), Postives = 164/283 (57.95%), Query Frame = 3
Query: 420 AARRLIHNYVFKT------------------CTGVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSRLVKQGEGPEAREVMLWPATREVAG-----EKEQCMHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVTPLMRTPAIPLPPGWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
AARR +YVF T G+SL T H W+Q +GFRWRRHR CVY DGHNRPD + R YV M + T +L K GEGPEA EV LWPA E AG E MHV+L GEC WEK H+ TSG + E+++LW T R PA PLPPG+ L P++VMEV+YHDECA+K+ND G WE AVM SDLIGEERGQ++IP V+ +M E G +P ME+ D RSDTY GRC PC+EYP+G
Sbjct: 444 AARRGSRSYVFGTSRSEHLNDTALKPYMEEGARGISLDTVHRWLQDLGFRWRRHRNCVYADGHNRPDNIRRRTGYVTEMQEHQKRTV---KLAKIGEGPEAEEVALWPAVSESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHDECAYKQNDSGGAAWEXXXXXXXXXXXXXXAAVMVSDLIGEERGQLDIPAEVYAIMQEHGTMPKMEITDEGATLSRSDTYVGRCKPCEEYPDG 723
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE) HSP 1 Score: 173 bits (439), Expect = 1.340e-43 Identity = 102/251 (40.64%), Postives = 124/251 (49.40%), Query Frame = 3
Query: 597 TMLAVRNSTAMPSRLVKQGEGPEAREVMLWPATREVAG-----EKEQCMHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVTPLMRTPAIPLPPGWELRAPKDVMEVI---------------------------------------------YHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
T + + RL K GEGPEA EV LWPA E AG E MHV+L GEC WEK H+ TSG + E+++LW T R PA PLPPG+ L P++VMEV+ YHDECA+K+ND G WEN G AVM SDLIGEERGQ++IP V+ +M E G +P E+ D RSDTY GRC PC+EYP+G
Sbjct: 39 TSCLISRPATLTCRLAKIGEGPEAEEVALWPAVFESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYHDECAYKQNDRGGAAWENXXXXXXXXXXXXGAAVMVSDLIGEERGQLDIPAEVYAIMQEHGTMPKREITDEGATLSRSDTYVGRCKPCEEYPDG 289
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE) HSP 1 Score: 168 bits (425), Expect = 9.350e-43 Identity = 82/158 (51.90%), Postives = 102/158 (64.56%), Query Frame = 3
Query: 726 MHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVTPLMRTPAIPLPPGWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
MHV+L GEC WEK H+ TSG + E+++LW T R PA PLPPG+ L P++VMEV+YHDECA+K+ND G WEN AVM SDLIGEERGQ++IP V+ +M E G +P ME+ D RSDTY GRC PC+EYP+G
Sbjct: 1 MHVQLEGECGWEKQHNLRTSGKLEELPVDERLELWCTERQRVPAQPLPPGFRLLEPREVMEVVYHDECAYKQNDRGGAAWENXXXXXXXXXXXXXAAVMVSDLIGEERGQLDIPAEVYAIMQEHGTMPKMEITDEGATLSRSDTYVGRCKPCEEYPDG 158
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.660e-34 Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 3
Query: 813 EQVKLWVTPLMRTPAIPLPPGWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
++++LW T R A PLP G+ L P++VMEV+YHDECA+K+ND G WEND KGAAM K EG AVM S IGEERGQ+++PE V+ +M E G+IP ME S+ Y GRC PC+E+P+G
Sbjct: 12 DRLRLWCTERQREAAQPLPTGFRLLGPQEVMEVVYHDECAYKQNDGGGAAWENDKKGAAMNPKNEGAAVMVSSAIGEERGQLDVPEDVYAIMKEQGKIPKMETTGDGARLSSSEYYIGRCKPCEEHPDG 140
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5K7H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H4_9PHAE) HSP 1 Score: 125 bits (315), Expect = 5.980e-31 Identity = 66/129 (51.16%), Postives = 79/129 (61.24%), Query Frame = 3
Query: 465 GVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSRLVKQGEGPEAREVMLWPATREVAG-----EKEQCMHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVT 836
G+SL T H W+Q +GFRWRRH+KCVY DGHNRPD + R YV M + T +L K GEGPEA EV LWPA E AG E MHV+L GEC WEK H+ TSG + E+++LW T
Sbjct: 7 GISLDTVHRWLQDLGFRWRRHQKCVYADGHNRPDNIRRRMGYVTEMQEHQKRTV---KLAKIGEGPEAEEVALWPAVFESAGGDPLGEGSTWMHVQLEGECGWEKQHNLRTSGKLDELPVDERLELWCT 132
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5JR89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR89_9PHAE) HSP 1 Score: 117 bits (292), Expect = 3.730e-24 Identity = 89/279 (31.90%), Postives = 132/279 (47.31%), Query Frame = 3
Query: 447 VFKTCTGVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSRLVKQGEGP-----------------EAREVMLWPATREVAGEKEQCMHVELAGECDWEKFHSQTTSGVSGGMSDAEQVKLWVT---PLMRTPAIPLPP----------GWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYP 1193
VF G+S T H+W+ +GFRW++ KCVYVDGHNRPDVVE R+ YV ML +R ++ +++ G+G + E + WPA R V GE E HV + D E+ + ++ + + + P + +P P + L +V+ + +HDE KENDD W + KGAA+K+KGEGRA SD+IG +RG I + W MM E + +E K+ + R G P + +P
Sbjct: 482 VFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVVEARREYVAKMLILRKMMSIDL-VMRDGKGDYSLVPDLQVRDLYVAKKKKEEALFWPARRIVDGETEY-KHVHVH---DGERPYGDCVRIKPNALNVSHRCECRDCKRKPFDSSSRVPFNPRDLLGRDGRGDFCLVPDHEVLALYFHDETTAKENDDGSNQWVSVLKGAAIKKKGEGRAAHISDIIGVDRGVAAIGKEAWGMMQEDMNV--VEDKENPVEVARPAPKDGEAPTHRVFP 753
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.990e-22 Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 3
Query: 903 MEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQIPTMEMKDGKLVEGRSDTYAGRCPPCQEYPEG 1199
MEV+YHDECA+K+ND G WEN AVM SDLIGEERGQ++IP V+ +M E G +P E+ D RSDTY GRC PC+EYP+G
Sbjct: 1 MEVVYHDECAYKQNDSGGAAWENXXXXXXXXXXXXXAAVMVSDLIGEERGQLDIPAEVYAIMQEHGTMPKREITDEGATLSRSDTYVGRCKPCEEYPDG 99
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE) HSP 1 Score: 107 bits (268), Expect = 4.970e-21 Identity = 107/365 (29.32%), Postives = 141/365 (38.63%), Query Frame = 3
Query: 450 FKTCTGVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSR-----LVK---QGEGPEA---------------REVMLWPATREVAGEKEQCMHV--------ELAGECDWEKF---HSQTTSGVSGG----------------MSDAEQVKLWV----------------------------------------------TPLMRTPAIPLPP----------GWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVETGQI-----------PTMEMKDGK--------LVEGRSDTYAGR 1169
FK G+S T H W+ +GFRWRRH KCVYVDGHNRPDVVE R+ Y + M +R ++P + +VK EG E+ +E +LWP R++ + HV E G+ D + Q GG S E+V LW TP + + +P + L +VM + +HDE KENDD G W + KGAA+K+KGEGRAV SD+IG +RG I + W MM E + P E DG+ L GRS Y GR
Sbjct: 528 FKDGGGISRSTAHHWISQLGFRWRRHGKCVYVDGHNRPDVVEARRLYTEKMFVMRRIISIPEKVETVVMVKVRDAEEGEESAMGDSDGSITGLAAGKEPVLWPVVRKMPDGRVDSKHVLVYGNQFTEATGDDDCTRVCIDEDQLKMRDRGGDYSLVPDREVQKCYEAKSVTEEVLLWPARRVVAGKEEYKHVRVHDGEQSCGDCKRLGVTNWLDPDCACYDCKRTPFVVSSRVPFNRRDLSASDGLGDFCLVPDHEVMSLYFHDETTAKENDDGGCQWMSIEKGAAIKKKGEGRAVHVSDIIGVDRGVAVIGKEAWGMMQEDMDVLEDVVDLVEVEPATE--DGEAPKHGASTLYNGRSGIYFGR 890
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.370e-18 Identity = 95/351 (27.07%), Postives = 138/351 (39.32%), Query Frame = 3
Query: 465 GVSLRTTHAWMQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSR-----LVKQGEGPEAR-------------------EVMLWPATR--------------------EVAGEKEQCMHVEL-AGECDW---------------------EKFHSQT----TSGVSGGMSDAEQVKL------------------WV-----------TPLMRTPAIPL----------PPGWELRAPKDVMEVIYHDECAWKENDDSGQGWENDGKGAAMKQKGEGRAVMASDLIGEERGQMEIPEAVWKMMVE---TGQIPTMEMKDGKLVEGRSDTYAGRCPPC 1181
G+ T H W+ +GFRWRRH KCVYVDGHNRPDVV+ R+ Y + M +R ++P + +VK + + E +LWPA R E G C V + AG+ + E+ + V G + + V++ W+ TP + + +P + L +V+ + +HDE KENDD G W + KGAA+K+KGEGRAV SD+IG +RG I + W MM E G P +E+ + +G + T G P C
Sbjct: 119 GICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTDDRRDDNITAAVACAEPVLWPAVRTMPDGGVDFKHVLVYGDKFTEATGHDRCCTRVSVDAGDLEMTGRGGHYTLVPDREVQECYKAERVKEEALFWPAKRVVAGKEEYKHVRVRDGEQLRGRNCKRVGEFNWISADCDCHDCKRTPFVDSSRVPFNRRDLSASDGQGDFCLLPDHEVLALYFHDETTAKENDDGGCQWMDGQKGAAIKKKGEGRAVHVSDIIGVDRGVAVIGKEAWGMMQEDKSVGYAPAVEV----IAQGPA-TGDGDVPEC 464 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig789.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig789.14.1 >prot_P-littoralis_Contig789.14.1 ID=prot_P-littoralis_Contig789.14.1|Name=mRNA_P-littoralis_Contig789.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp MQAVGFRWRRHRKCVYVDGHNRPDVVEHRQTYVQTMLAVRNSTAMPSRLVback to top mRNA from alignment at P-littoralis_Contig789:24157..26736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig789.14.1 ID=mRNA_P-littoralis_Contig789.14.1|Name=mRNA_P-littoralis_Contig789.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2580bp|location=Sequence derived from alignment at P-littoralis_Contig789:24157..26736+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig789:24157..26736+ >mRNA_P-littoralis_Contig789.14.1 ID=mRNA_P-littoralis_Contig789.14.1|Name=mRNA_P-littoralis_Contig789.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig789:24157..26736+ (Pylaiella littoralis U1_48)back to top |