mRNA_P-littoralis_Contig1199.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1199.1.1
Unique Name	mRNA_P-littoralis_Contig1199.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.350e-22
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGV-DVAGNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   V   +F++L +WN RG D V    GNV +PA  P+L+ +ARL+ GI+ +SCQAERNFSAL  ++   R   L RK+E+M+L+RLNRHL+
Sbjct:  135 LAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.920e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGV-DVAGNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   V   +F++L +WN RG D V    GNV +PA  P+L+ +ARL+ GI+ +SCQAERNFSAL  ++   R   L RK+E+M+L+RLNRHL+
Sbjct:  700 LAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.590e-21
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGVDVA-GNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   ++   F++L YWN RG D V    G V +PA  P+L+ +ARLY GI+ TSCQAERNFSAL  ++   R   LP K+E+M+ +RLNRHL+
Sbjct:  517 LAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.720e-21
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGVDVA-GNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   ++   F++L YWN RG D V    G V +PA  P+L+ +ARLY GI+ TSCQAERNFSAL  ++   R   LP K+E+M+ +RLNRHL+
Sbjct:  712 LAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.360e-20
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGV-DVAGNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   V+   F+L+ +WN RG + V    G V APA  P+L+ +ARL+ GI+ TSCQAERNFSAL  ++   R   L RK+E+M+L+RLNRHL+
Sbjct:  395 LAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.940e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGVDVA-GNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLN 270
            + E   V+  +F+LL +WN RG D V  A G V +PA  P+L+ +ARL+ GI+ TSCQAERNFSAL  ++ D R   L  ++E+M+L+RLN
Sbjct:  130 LAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.480e-19
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGVDVA-GNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   V+  +F+LL +WN RG D V  A G V +PA  P+L+ +ARL+ GI+ TSCQAERNFSAL  ++ D     L  ++E+M+L+RLN+HL+
Sbjct:  513 LAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.630e-19
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 1

Query:    1 MKEAAAVNDSNFDLLKYWNARGVDGVDVA-GNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLI 282
            + E   ++   F+L+ +WN RG D V  A G V +PA  P+L+ +ARL+ GI+ TSCQAERNFSAL  ++ + R   LP ++E+M+L+RLNR ++
Sbjct:  409 LAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.830e-16
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1

Query:    4 KEAAAVNDSNFDLLKYWNARGVDGVDVAGNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLIP 285
            K  AAV   ++D+L +W   G   +D  GNVV+ A  P LS+LAR+Y  ID+TSCQ+ER FS L  V ++ R   +P ++E ++ LR N HLIP
Sbjct:  165 KLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIP 258

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BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.140e-16
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1

Query:    4 KEAAAVNDSNFDLLKYWNARGVDGVDVAGNVVAPACRPHLSLLARLYAGIDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLIP 285
            K  AAV   ++D+L +W   G   +D  GNVV+ A  P LS+LAR+Y  ID+TSCQ+ER FS L  V ++ R   +P ++E ++ LR N HLIP
Sbjct:  167 KLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIP 260

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1199.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5KJT6_9PHAE	4.350e-22	48.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRT6_9PHAE	4.920e-21	48.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTB8_9PHAE	6.590e-21	48.42	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	6.720e-21	48.42	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KDJ6_9PHAE	7.360e-20	48.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7P7_9PHAE	7.940e-20	48.35	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JQI6_9PHAE	1.480e-19	47.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	2.630e-19	45.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L256_9PHAE	5.830e-16	45.74	Dimer_Tnp_hAT domain-containing protein (Fragment)...	[more]
A0A6H5L902_9PHAE	9.140e-16	45.74	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1199	contig	P-littoralis_Contig1199:36..320 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	285
Hectar predicted targeting category	other localisation
Exons	1
Cds size	285

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789504.0576189-CDS-P-littoralis_Contig1199:35..320	1680789504.0576189-CDS-P-littoralis_Contig1199:35..320	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1199 36..320 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1199.1.1	prot_P-littoralis_Contig1199.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1199 36..320 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1199:36..320-
coding sequence from alignment at P-littoralis_Contig1199:36..320-

protein sequence of mRNA_P-littoralis_Contig1199.1.1

>prot_P-littoralis_Contig1199.1.1 ID=prot_P-littoralis_Contig1199.1.1|Name=mRNA_P-littoralis_Contig1199.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
MKEAAAVNDSNFDLLKYWNARGVDGVDVAGNVVAPACRPHLSLLARLYAG
IDTTSCQAERNFSALKQVLSDKRAGTLPRKIEQMLLLRLNRHLIP

mRNA from alignment at P-littoralis_Contig1199:36..320-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1199.1.1 ID=mRNA_P-littoralis_Contig1199.1.1|Name=mRNA_P-littoralis_Contig1199.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig1199:36..320- (Pylaiella littoralis U1_48)
ATGAAAGAAGCGGCCGCCGTCAACGACTCCAACTTCGACCTACTGAAGTA
CTGGAACGCGCGGGGCGTGGATGGGGTAGACGTGGCAGGGAACGTTGTAG
CGCCTGCATGCCGGCCGCATCTGAGTTTACTAGCACGCTTGTACGCAGGC
ATCGATACCACCAGTTGTCAAGCGGAGAGGAACTTTTCCGCCCTCAAGCA
GGTCCTTAGTGACAAGCGTGCCGGTACCCTGCCCCGTAAGATCGAGCAGA
TGCTGTTGCTCAGGCTTAACAGGCACCTCATTCCA

Coding sequence (CDS) from alignment at P-littoralis_Contig1199:36..320-

>mRNA_P-littoralis_Contig1199.1.1 ID=mRNA_P-littoralis_Contig1199.1.1|Name=mRNA_P-littoralis_Contig1199.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig1199:36..320- (Pylaiella littoralis U1_48)
ATGAAAGAAGCGGCCGCCGTCAACGACTCCAACTTCGACCTACTGAAGTA
CTGGAACGCGCGGGGCGTGGATGGGGTAGACGTGGCAGGGAACGTTGTAG
CGCCTGCATGCCGGCCGCATCTGAGTTTACTAGCACGCTTGTACGCAGGC
ATCGATACCACCAGTTGTCAAGCGGAGAGGAACTTTTCCGCCCTCAAGCA
GGTCCTTAGTGACAAGCGTGCCGGTACCCTGCCCCGTAAGATCGAGCAGA
TGCTGTTGCTCAGGCTTAACAGGCACCTCATTCCA