mRNA_P-littoralis_Contig788.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig788.8.1
Unique NamemRNA_P-littoralis_Contig788.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig788.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig788contigP-littoralis_Contig788:44996..45545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.4345284-CDS-P-littoralis_Contig788:44995..451671680791613.4345284-CDS-P-littoralis_Contig788:44995..45167Pylaiella littoralis U1_48CDSP-littoralis_Contig788 44996..45167 -
1680791613.445757-CDS-P-littoralis_Contig788:45226..453121680791613.445757-CDS-P-littoralis_Contig788:45226..45312Pylaiella littoralis U1_48CDSP-littoralis_Contig788 45227..45312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.456054-UTR-P-littoralis_Contig788:45312..455451680791613.456054-UTR-P-littoralis_Contig788:45312..45545Pylaiella littoralis U1_48UTRP-littoralis_Contig788 45313..45545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig788.8.1prot_P-littoralis_Contig788.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig788 44996..45312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig788.8.1

>prot_P-littoralis_Contig788.8.1 ID=prot_P-littoralis_Contig788.8.1|Name=mRNA_P-littoralis_Contig788.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MLSSTEQGNSSATNRPCSTSSQQNPTLKTWTGISVTKNQSLNAMHIVCVE
FHAFNDNLPMISNTTVQCAAIHHEFHNDNIFAPPKY
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mRNA from alignment at P-littoralis_Contig788:44996..45545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig788.8.1 ID=mRNA_P-littoralis_Contig788.8.1|Name=mRNA_P-littoralis_Contig788.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=550bp|location=Sequence derived from alignment at P-littoralis_Contig788:44996..45545- (Pylaiella littoralis U1_48)
ACAACGCCAAGCTGCCAACCTGAGGCAAACGCCAAAATCCATCAGACGAA
CCGAAATTCAAAAGCCAAGTTCAAAGCGCACGAAAATCAAAACAATATCC
AGAGTAGAAATGAGACGTGTCGTTCCAATCTGTATCCTTCAGCACCTCAT
TTAAACCAAAAACAAAAAGTGAAGAAATATGAAAACCAGAGCATCCGAAA
ACTTACGACCGCTTGTCTCACTGACGATGTGCGATGCTGTCGTCCACTGA
GCAAGGAAATTCTTCAGCAACCAATCGCCCATGTTCGACCTCATCACAGC
AAAACCCCACACTGAAAACGTCAAAAATTACTCCCAACCGATGACCATTG
TGGGAACAAGAACGCTATCCGGAAAGAGATGGACGGGTATCAGTGTTACT
AAGAATCAGAGTCTGAACGCTATGCACATTGTCTGCGTAGAGTTTCACGC
ATTCAACGACAACCTCCCCATGATTTCAAATACAACAGTACAATGCGCAG
CAATCCATCATGAATTCCACAACGACAATATATTCGCCCCCCCGAAGTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig788:44996..45545-

>mRNA_P-littoralis_Contig788.8.1 ID=mRNA_P-littoralis_Contig788.8.1|Name=mRNA_P-littoralis_Contig788.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig788:44996..45545- (Pylaiella littoralis U1_48)
ATGCTGTCGTCCACTGAGCAAGGAAATTCTTCAGCAACCAATCGCCCATG
TTCGACCTCATCACAGCAAAACCCCACACTGAAAACATGGACGGGTATCA
GTGTTACTAAGAATCAGAGTCTGAACGCTATGCACATTGTCTGCGTAGAG
TTTCACGCATTCAACGACAACCTCCCCATGATTTCAAATACAACAGTACA
ATGCGCAGCAATCCATCATGAATTCCACAACGACAATATATTCGCCCCCC
CGAAGTAT
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