mRNA_P-littoralis_Contig788.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig788.3.1
Unique NamemRNA_P-littoralis_Contig788.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig788.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig788contigP-littoralis_Contig788:5259..7369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.3894033-CDS-P-littoralis_Contig788:5258..53951680791613.3894033-CDS-P-littoralis_Contig788:5258..5395Pylaiella littoralis U1_48CDSP-littoralis_Contig788 5259..5395 +
1680791613.4023347-CDS-P-littoralis_Contig788:7236..73691680791613.4023347-CDS-P-littoralis_Contig788:7236..7369Pylaiella littoralis U1_48CDSP-littoralis_Contig788 7237..7369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig788.3.1prot_P-littoralis_Contig788.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig788 5259..7369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig788.3.1

>prot_P-littoralis_Contig788.3.1 ID=prot_P-littoralis_Contig788.3.1|Name=mRNA_P-littoralis_Contig788.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
EEQARGSLETIKRETTHQFSLRCSDHTTFDTRESQHTWRYGKQRPRHHLP
RTPVWQTALKPVRPKPRPPLWLRQPREKPRPPEWPRQHQL
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mRNA from alignment at P-littoralis_Contig788:5259..7369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig788.3.1 ID=mRNA_P-littoralis_Contig788.3.1|Name=mRNA_P-littoralis_Contig788.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2111bp|location=Sequence derived from alignment at P-littoralis_Contig788:5259..7369+ (Pylaiella littoralis U1_48)
GAGGAGCAAGCGAGAGGGAGCTTAGAAACAATCAAGAGAGAAACGACACA
CCAGTTCAGCTTGCGTTGCAGTGATCACACCACGTTCGACACGAGAGAAT
CTCAGCACACTTGGCGCTACGGCAAGCAACGTCCACGGTGAGCTGTCTGT
CGTCGTAGTATCTCTTCTCTGTTCCTGAGCTCCTTCGACCGCTCCTCCCC
CCCCGCCTTATGCTTTCAGCTCGTACTGGTTTCAGTACAGCCACTGCTGA
AACATTTTGTTCTTAGTATTTCCAGTATTAACTGGTCCGCTGTCTTTGTA
GTTTCATTTTTTTTTGCGTGATCGAACATCCGAGCGCGTACCGATGTGTC
TTCGGATTCAGCTTCTTCCAGCCCTGTGCACAACCGCACTAGCAACAGCA
GTGGTAGCCCGGCGAGTGCCACGGTATCGCTTGCTGCTTCATCTAGTCAC
GGTAGTGAGCTTGACAGTGTGCTCTCGCTCGATGCTGAAAACTCAGAGTC
GCTTCAGCATGAAACTGCTGCAGCCGGCTACAGGATGAGTTCCGTCGAAT
TGCACACACACAGGCAGTCACACTCAAACCATGGCCTCGGCTTCGCAAGC
CTCAGCCGTGAGTAGTGTACTGCCTCTTGCAGTAGTGCCTCCAATTGCTG
TAGAATCAGGCCCTGTTGTACAGGCTAGTTCAGCACATCCGTCGGTTTCA
GTAATGGCCTCTGCCGCCGTATCTGATCATGTACCTGTATCGGTCGATAC
AGCCTCTACTACTGCAGTACTGCTGTTAGAAAATTCCGAAACTACTGCTG
TACGATCTGAAAGGGATGATGATGATACTACTGCAGTACTGCTGTTAGAA
AATTCCGACACTACTGCTGTACGATCTGGAATGGATGAAACTACAGCAGT
TTTATCACACACACTCTCCCTCGAGCACAGACTCGAGAGCTCAAACACAA
CAATGCTTGACTCCATTTTTGAAACACTCCGTGAGCTCAGCACCTCACCC
GAGGCCTCGGGATCTCCGGATCCATCCGAGTCTCCTCCTTCGGGATCAGG
GGGAAAGTTGGCTGCGTTCACGCGCCCTTCCCCAACAACTGTCATCTCTG
ACGAGACTTCGACAGGGGGAAAGTTGGCTGCGTTCACGCGCCCTTCCCCA
ACAGCTGTCATCTCGGACGAGACTTCGACAGGGGGAAAGTTGGCTGCGTT
CACGCGCCCTTCCCCAACAGCTGTCATCTCGGACGAGACTTCGAGGGGAA
CTGGCTGCGTTCACGCGCCCTTCCCCAACAGCTGTCATCTAGGACGAGAC
TTCGACGAGGGGAAAGTTGGCTGCGTTCACGCGCCCTTCCCCAACAGCTG
TCATCTCGGACGAGACTTCGACAGGGGGAAAGTCGGCTGCGTTCACGCGC
CCTTCCCCAACAGCTGTCTTCTCTGGTGAGACTTCTACTCTGGGAATTTC
GGCTGCATGCTCGCGCCTTTCCCGCACAGCTGTCTTTTCTGATGAGACTT
CGACGCTGAAAATTTCGCTGCCCTCCCGCGCCGTTCCACCACAGCTGTTA
TCTCTGACGAGACTTCGACGCTGTTGTCGGGCACAACCTTTGGTCGCCAA
TCCGGAATACATGAAGGGGTCCCGTGGATCATGAAACCGTTATCTGATTT
CACCGCCGGCGCAACCTCGCACATGCACGCTGCGCGCGCCAGTGCGCCAT
CACCAGACACCATTGTTGAACATGCTTCTTCACGCGTAGAGATCACTGCT
TTTCCTTTAAGTCATGCAGTTGCATCGGGCAGCACCGCTGCGGCTCGCCC
GCCCTCAGCCAAGCCCATGTCATCGATCACTCGAACACAGAACGCATTAC
GGGAGGCACGTCGGATTCGCCGGTCAAATCAGTACACTTTGCCTACTGCT
GCACGCACTGCCTTTGACAAAACGCCCCTTCCGACGCCCAAACCCACACC
GCGTGCGCTCCCCTTGCGCGGCATGCAGACACCACCTGCCCCGGACACCA
GTATGGCAGACAGCTCTGAAACCAGTTCGTCCGAAGCCGCGCCCGCCTTT
ATGGCTGAGGCAGCCGCGAGAGAAGCCGCGCCCGCCGGAATGGCCGAGGC
AGCACCAGCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig788:5259..7369+

>mRNA_P-littoralis_Contig788.3.1 ID=mRNA_P-littoralis_Contig788.3.1|Name=mRNA_P-littoralis_Contig788.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig788:5259..7369+ (Pylaiella littoralis U1_48)
GAGGAGCAAGCGAGAGGGAGCTTAGAAACAATCAAGAGAGAAACGACACA
CCAGTTCAGCTTGCGTTGCAGTGATCACACCACGTTCGACACGAGAGAAT
CTCAGCACACTTGGCGCTACGGCAAGCAACGTCCACGACACCACCTGCCC
CGGACACCAGTATGGCAGACAGCTCTGAAACCAGTTCGTCCGAAGCCGCG
CCCGCCTTTATGGCTGAGGCAGCCGCGAGAGAAGCCGCGCCCGCCGGAAT
GGCCGAGGCAGCACCAGCTC
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