mRNA_P-littoralis_Contig787.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.30.1
Unique NamemRNA_P-littoralis_Contig787.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig787.30.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.010e-44
Identity = 87/163 (53.37%), Postives = 108/163 (66.26%), Query Frame = 3 
Query:  726 LHEFLSAYRDAKCVDGDELRFDWSAVGKTHFPWPNLTMMLISVWSILTRPSRAALQLLLDLLRYVDPDGCRFDPRDLPRSAEHLIARGRLLLPLLKVFERPIKDKGGNETYVLDIPFGVLLQRMFSCPAVMEELLENTGGHVMSAEERSIDRVTYDHLTPQAT 1214
            +H+ L  Y+DA+CVDG + +F   A+   HFPW NL   LI VW++  RPSR +LQ+LL L  +VD  G RF P D PRS EHLI+R R  LP L VFER I DK G     +DIPF VLLQRM SCP V+EE  +N GGHVMS  ER+ + +  +H+TP AT
Sbjct:   29 MHKTLPEYKDAECVDGVDPQFLIDALRSRHFPWRNLMEQLIGVWAVTHRPSRKSLQILLGLFSFVDRQGYRFRPEDAPRSVEHLISRMRKRLPHLPVFERTINDKNGETAKAIDIPFNVLLQRMLSCPRVVEEWRKNFGGHVMSRSERAKNNLPDEHITPVAT 191
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BLAST of mRNA_P-littoralis_Contig787.30.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.410e-12
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 3 
Query:  780 LRFDWSAVGKTHFPWPNLTMMLISVWSILTRPSRAALQLLLDLLRYVDPDGCRFDPRDLPR-SAEHLIARGRLLLPLLKVFERPI------KDKGGNETYVLDIPFGVLLQRMFSCPAVMEELLENTGGHVMSAEERSIDRVTYDHL 1199
            LR++  A G   +P+ NL+++L+S ++   + SR  L+ +L++LR+VD DG RF+  DL     EH  AR R   PLL+V +R +      K  G       DIP  +++ R+      MEE+L N GG  +S +E +   +   H+
Sbjct:   83 LRYNQKAEGSDTYPFENLSVLLLSQFTSKYKVSRVMLRGMLEMLRFVDDDGSRFNIDDLKDVHHEHFQARRRKYYPLLQVVKRKVEASATAKKAGETTADAYDIPTNLVVDRLLRSAPSMEEMLSNQGGKQLSRDETAAAGLASTHI 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGI1_9PHAE1.010e-4453.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6T4_ECTSI4.410e-1233.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:71348..74499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1225
Hectar predicted targeting categoryother localisation
Exons2
Cds size933
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.0693192-UTR-P-littoralis_Contig787:71347..716371680791613.0693192-UTR-P-littoralis_Contig787:71347..71637Pylaiella littoralis U1_48UTRP-littoralis_Contig787 71348..71637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.0839603-CDS-P-littoralis_Contig787:71637..719741680791613.0839603-CDS-P-littoralis_Contig787:71637..71974Pylaiella littoralis U1_48CDSP-littoralis_Contig787 71638..71974 +
1680791613.1007595-CDS-P-littoralis_Contig787:73903..744991680791613.1007595-CDS-P-littoralis_Contig787:73903..74499Pylaiella littoralis U1_48CDSP-littoralis_Contig787 73904..74499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.30.1prot_P-littoralis_Contig787.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 71638..74499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.30.1

>prot_P-littoralis_Contig787.30.1 ID=prot_P-littoralis_Contig787.30.1|Name=mRNA_P-littoralis_Contig787.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MPHHPAHQYSGGVCACLLCVCVVMEADDERGQSRGSGRTRLIPQPGRGFM
CSACRWRFSSLRDGRAHISTCKGGEPAPSEPIAPAASDAARSSVGGQGLG
ASDDPGGEAIEDGASGMYDDGNASDGADDSPADRTKNTKAPWVDLLHEFL
SAYRDAKCVDGDELRFDWSAVGKTHFPWPNLTMMLISVWSILTRPSRAAL
QLLLDLLRYVDPDGCRFDPRDLPRSAEHLIARGRLLLPLLKVFERPIKDK
GGNETYVLDIPFGVLLQRMFSCPAVMEELLENTGGHVMSAEERSIDRVTY
DHLTPQATNNA
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mRNA from alignment at P-littoralis_Contig787:71348..74499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.30.1 ID=mRNA_P-littoralis_Contig787.30.1|Name=mRNA_P-littoralis_Contig787.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3152bp|location=Sequence derived from alignment at P-littoralis_Contig787:71348..74499+ (Pylaiella littoralis U1_48)
ATGTGCCGTTGAAGAAAAGTGTGCATTATCTCGCATGACCGATTACACAG
CAGGAAATCACTCACCAACAGAAGTACCAAGAGCTCGATGTCCCATCGTG
TGACGGGAGGTCGGAGGTGTAACTCTCTTAGCAGCACACGTACATTGGGT
GCCTCGCTCAGACCCCGGGCTGGCGGTGGGGTCCGGCGTCGTTCGACGGG
GGGTGCAGGATGACTTCATGACTTCTTCCGACCCTATCTATATCTCGATA
CTGTACCCCACGGGACCCCCTTGCTCGGCTAGGCGGCGCAATGCCCCATC
ACCCTGCACACCAGTACAGTGGGGGTGTATGTGCATGCTTGTTGTGTGTG
TGTGTCGTCATGGAGGCTGACGATGAGAGGGGACAGAGCAGAGGATCTGG
TCGAACTCGACTTATCCCTCAACCTGGCCGCGGATTTATGTGCAGTGCCT
GTCGGTGGCGATTCTCATCCCTCCGCGACGGAAGAGCCCATATTTCAACT
TGCAAAGGGGGAGAGCCAGCCCCTTCAGAGCCTATTGCACCTGCTGCGAG
CGATGCCGCTAGGTCAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAGATG
ATCCGGGTGGCGAGGCCATAGAAGACGGTGAGTTGACATGGACGAGGGAG
AGATGAGCAGAGCGTGATCTTAGATTGGCACCCTCCCGGTGCTATCGATA
CAGCAGTGTCCAGAATGCGACGTATAATATCACCCCCCCTCCCCCCCTGG
GCTCTTTTTTTCCTCGAACGACGATTACGCCGCCACGAACAGGATACCAA
TATCAAAATATACGGTGCGTTTTCACGACATATCTCCAACGCCACGCTTG
TCGGCACCGAAAATGGGGCAAGGGGGATATACCTGGTACAAAAAAAGTCT
TATGTTTTCACTCCGTAGGGGGGGGTCTTATCCTACGCAACCTACGGCTG
TATCCTACGTATATATACCAAGGGGTACTAATATACAGCCGCATATCATT
CTACCCCCCGCATAGGCAAGGGCAACACCAATAGTGGCCAAACGGTTAGA
TGGCAGCTTTCTATTTTGTCGCATGCATGTTTATTTTTTACAAGCAGTTG
GTCGGGGATTGCTGAGCAGAATTGTTGGGTTCCGTGCGATTTGGGTACCG
TAAAGTACAGTCGAGGTCCCGGTTTACCGGTTTAAGGGCCGGTAAACAGG
GCAAACCGGTAAACCTATACCGGCATGTACCGGTAAACAGGTACCTGTTT
ACCGGTACATGCCGGTATACTGGGGAAAACGCCCCCACGAGCGTAGGAAG
AGCAGGTGTATCTCCACAGACTTTGATGCAGTATGGCCTGTCTGTTTCTC
CTGCTGTCCTGGTAACCAGCACCTACAGTAGTAGTATAATAGTATAGACG
AGTGTGTGATCGCTGTACAGTACCCACTGCTGGCTGTTGGTACTGGTGTT
GGTACTGCTGGCCGATTCATTTGCTGCAGCGCATGACTGGCAGATACGGT
TGACTTCCTCGTCGCCTTCAGGATTTTGTATCTCGGCGCAAATGCGATGC
AGACGACCTCCGCACGGGCCACAGCAGGAGAGTTCTGGGGTGATATTCCT
GTCACTAAGGTGGCATAATTCTCCTGCCGCACACGACATGGTGTGCAGGC
AGGTGTTGGCTGCTACCCACAGCAACCGGAGTGCTGTGTTGTGTTGTGTT
GTGTCGTGTGCAGCAGTGTGTGTGGGAGTGTGCAGCAGCAGCAAAAGGGG
CTCCGCAAGCATGAAAAAAGGGAGGACCCCGGTATACCGGCACATAACCG
GTAAACCGGGGTGCGGGCGTGTCAAGAAAAAAAGGGCCGGTAAAGTGGGC
AAACCGGTAAACAGGGGGCCGGTAAACCGGGACCTCGACTGTACCGTAAA
TTAGCAGGAATGGCTGCTATTTCACCCCGTTGTAGACGTTTTAGGGTGTC
TCCATGCTCCCTGTGTCGCTTCTGTCTTTGCTTTGACCTGCTGCCCCGCA
CTTTAGGATAGGCAACACACCACAAAAAAATGCAAACAATCGCATGCAAC
CTCTCACCATACGGGGTGCCGGCAAACACCTTCGCACAAGTGCCGGATGA
AAGCAGCTTTTTCGCCAAACAGTCGGCTATATTCGTTCGCAGTGATACTT
AAACTCCAAGAACACAATCCCGTCGAAAATAACCCCGGGGTTAACACATC
ATGAACGATGTACCCCGGGGGGCTTCGCACCCCCGAATTGGTGGCCTCGC
AAGAAGAAAGCGTTTTCGTAGACCCAGGGTTGACTTTGTTGTCATTTCCT
GAATTATCGACCCTCGTATGCAGACCCGGGGCGATATTTCTGCGCAACGG
TTTCGTTCCGTCCCCGTAGACCCCGCCAAAGGGGTGACGAAGATCCACTT
ACATGTAGAAACGACTTCATACTTCCTGTCCCGTGCTCACTCGAAAACGT
ACGATACTGCATGTGCCTTGATCATTTTTAACAACGGCAGTATTTAAATC
GTATCAAGTCGCCTGTGCTCGCTGTTGCTGCCACTTGCCCCCTCAACTCG
GCTCAGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGATGGCGCC
GACGATTCGCCTGCGGACCGAACGAAGAACACGAAGGCTCCTTGGGTTGA
CCTGTTGCACGAGTTCCTGAGCGCATACCGAGACGCCAAGTGCGTAGACG
GCGACGAGCTTAGATTCGACTGGTCTGCTGTAGGGAAAACCCACTTCCCG
TGGCCAAACCTTACGATGATGCTCATCAGTGTTTGGTCTATTCTTACGCG
TCCCTCGCGCGCGGCACTACAACTTCTCCTCGATTTACTCCGGTATGTGG
ACCCTGATGGATGCAGATTCGACCCTCGAGATTTGCCTCGGTCGGCGGAG
CACCTTATCGCCAGGGGGCGTTTGCTTCTTCCGCTTCTGAAGGTGTTCGA
GCGTCCAATCAAGGACAAGGGAGGAAATGAGACGTACGTTCTTGACATTC
CATTCGGGGTGCTGCTTCAGCGCATGTTCAGCTGCCCCGCAGTGATGGAG
GAACTACTCGAAAACACGGGGGGGCACGTAATGTCGGCAGAAGAGCGAAG
CATTGACAGAGTAACGTACGACCACCTCACCCCCCAAGCCACAAACAACG
CG
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:71348..74499+

>mRNA_P-littoralis_Contig787.30.1 ID=mRNA_P-littoralis_Contig787.30.1|Name=mRNA_P-littoralis_Contig787.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=933bp|location=Sequence derived from alignment at P-littoralis_Contig787:71348..74499+ (Pylaiella littoralis U1_48)
ATGCCCCATCACCCTGCACACCAGTACAGTGGGGGTGTATGTGCATGCTT
GTTGTGTGTGTGTGTCGTCATGGAGGCTGACGATGAGAGGGGACAGAGCA
GAGGATCTGGTCGAACTCGACTTATCCCTCAACCTGGCCGCGGATTTATG
TGCAGTGCCTGTCGGTGGCGATTCTCATCCCTCCGCGACGGAAGAGCCCA
TATTTCAACTTGCAAAGGGGGAGAGCCAGCCCCTTCAGAGCCTATTGCAC
CTGCTGCGAGCGATGCCGCTAGGTCAAGCGTGGGCGGTCAAGGATTGGGT
GCTTCAGATGATCCGGGTGGCGAGGCCATAGAAGACGGCGCGAGCGGCAT
GTACGACGATGGTAACGCTTCCGATGGCGCCGACGATTCGCCTGCGGACC
GAACGAAGAACACGAAGGCTCCTTGGGTTGACCTGTTGCACGAGTTCCTG
AGCGCATACCGAGACGCCAAGTGCGTAGACGGCGACGAGCTTAGATTCGA
CTGGTCTGCTGTAGGGAAAACCCACTTCCCGTGGCCAAACCTTACGATGA
TGCTCATCAGTGTTTGGTCTATTCTTACGCGTCCCTCGCGCGCGGCACTA
CAACTTCTCCTCGATTTACTCCGGTATGTGGACCCTGATGGATGCAGATT
CGACCCTCGAGATTTGCCTCGGTCGGCGGAGCACCTTATCGCCAGGGGGC
GTTTGCTTCTTCCGCTTCTGAAGGTGTTCGAGCGTCCAATCAAGGACAAG
GGAGGAAATGAGACGTACGTTCTTGACATTCCATTCGGGGTGCTGCTTCA
GCGCATGTTCAGCTGCCCCGCAGTGATGGAGGAACTACTCGAAAACACGG
GGGGGCACGTAATGTCGGCAGAAGAGCGAAGCATTGACAGAGTAACGTAC
GACCACCTCACCCCCCAAGCCACAAACAACGCG
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