mRNA_P-littoralis_Contig787.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.14.1
Unique NamemRNA_P-littoralis_Contig787.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: D7FHQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ3_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 8.410e-57
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 2 
Query: 2030 GSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCP 2323
            G GKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAW+YISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCP
Sbjct:   29 GLGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWSYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCP 126
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: A0A6H5L686_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L686_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 9.050e-53
Identity = 233/597 (39.03%), Postives = 268/597 (44.89%), Query Frame = 2 
Query: 1088 TMQLPPLPASQHNAAVSSILSSSSSXXXXXXXXXXXXXXXXXXXSPPSNNL---EHTSGRYQLPLPVCVQGADGTAVVGTSFSGGSVNQPQHQRWLTRGANISSSCGGSAG--DLRRQVPRINALSRSISSGTSCSDSTXXXXXXXXXQV----WETAS--ARLKPAG---------ERMHDGVFFKTTTAAAVS-PNFSSAGAPVCYDRGVEEKRGGSNWPRQHADACAPWSQQQQSQGMIR-IQQHPSE---------AGRPSSRTPSPVSPAVFRSAG-QDHVSRPQQLQHRHDHQHQLPTVASRPSPERIGAGARSWIPPVVDDGRVAAAAAAVSSVC------GEAHGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCPPTSSRGVSAVAVKXXXXXXXXXXXXXXXXXXHKRTPTSDDETGDASRLQHQQRRTSVPSSPVAPAPRAXXXTAAPAPAARGVFASFSASDNLGARPGTTTPAAAADEAESFDVAEEKQARADAVAALGMLFSQGGSSRSPSPLTANS 2764
            T + PP  A+    ++SS+L+SS S                   SPP+++         RY+LP P  +       V G S S       Q QRWL          GGS+G  +LRRQVPRI ALSRS S         XXXXXX         WE+A   +   P+G            H     + TTA   S PN +S+ A      G   +     W    +D    W   Q+ Q  ++ + QHPS+         +   SSRTPSP     FR    Q H +R                                                             +  G GKWDEEA+ARASGS GKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCP             XXXXXXXXXXXX             DD   D + +Q                   XX  AA  PA     A             T T AA   E    DV +E  ARADAVAALGMLFSQG S R+ +   A S
Sbjct:  265 TARAPPATATTSRGSLSSLLTSSPSCSPPGSRSN----------SPPTSSSITSHRRDVRYKLPPPQQL-------VAGISSSSAEPVDHQEQRWL--------HSGGSSGTDELRRQVPRIEALSRSNSGSXXXXXXXXXXXXXGSTSPVARRWESAGVYSSAVPSGGAPATGGAANSWHKPAGGQQTTAPYNSNPNLASSSAGHASWTGPTHR---GAWAPGFSDGRDEWQPPQRQQQQVKGVPQHPSDMTASPSSSPSWSSSSRTPSPF----FRQGHEQQHFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLQSGSKFKGLGKWDEEARARASGSEGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCPXXXXXXXXXXXXXXXXXXXXXXXXX-------------DDAKIDPTAMQX----------------XXXXHFAASVPAQ--AEAEXXXXXXXXXEVATNTTAAVKAE----DVNKENLARADAVAALGMLFSQGPSGRAAAAAVAAS 794
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: A0A7S0JKB2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKB2_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 8.300e-16
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSS 2308
            HG+ KW   A A+  G +GKQ  +R+  HL P   ++ WS +E++V+  A ++ GN W  I+ LLPGR++NA+KNHW + ++  + QR ++  S
Sbjct:   15 HGAKKWSTIA-AKLHGRIGKQCRERWHNHLNPDICKDAWSKEEDDVIMAAHRQIGNKWAEIAKLLPGRTDNAIKNHWNSSIKRRVEQRDDDAES 107
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: MYB_AVIMB (Transforming protein Myb n=3 Tax=root TaxID=1 RepID=MYB_AVIMB)

HSP 1 Score: 89.7 bits (221), Expect = 2.750e-15
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCPPTSSRG 2341
            +G  +W + A+    G +GKQ  +R+  HL P+  +  W+ +E+ ++++A K  GN W  I+ LLPGR++NAVKNHW + MR  + Q G    SSK  PP+++ G
Sbjct:   39 YGPKRWSDIAK-HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQEGYPQESSKAGPPSATTG 142
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: A0A896WCD8_MELAB (MYB family transcription factor n=1 Tax=Melilotus albus TaxID=47082 RepID=A0A896WCD8_MELAB)

HSP 1 Score: 86.7 bits (213), Expect = 4.630e-15
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2 
Query: 2021 EAHGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQR 2290
            E +G GKW + AQ +  G +GKQ  +R+L HL P   ++ WS +EE++L +A  E GN W+ I  +LPGR+EN++KNHW    R    +R
Sbjct:   35 EEYGLGKWSDIAQ-KLHGRMGKQCRERWLNHLRPDIKKDTWSEEEEKILMKAHGEIGNKWSKIVKMLPGRTENSIKNHWNATKRRQYSKR 123
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR)

HSP 1 Score: 81.6 bits (200), Expect = 7.970e-15
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMR 2272
            +G+ KW   AQ    G +GKQ  +R+  HL P  ++  W+ +E+ ++++A K+YGN W  I+ LLPGR++NA+KNHW + MR
Sbjct:   23 YGAKKWSLIAQ-HLPGRIGKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHWNSTMR 103
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: F0XZ12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ12_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 9.700e-15
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMR 2272
            HG+ +W     A +    GKQ   R+L HL P   RE WS  EE V++ AQ+  GN W  I+ LLPGR++NA+KNHWY+ MR
Sbjct:   42 HGTKRW-----AVSGFRSGKQCRTRWLNHLDPGIKREPWSEHEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMR 118
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: A0A452Q9J7_URSAM (MYB proto-oncogene, transcription factor n=2 Tax=Ursus TaxID=9639 RepID=A0A452Q9J7_URSAM)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCPPT 2329
            +G  +W   A+    G +GKQ  +R+  HL P+  +  W+ +E+ ++++A K  GN W  I+ LLPGR++NA+KNHW + MR  + Q G    SSK  PPT
Sbjct:  110 YGPKRWSVIAK-HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASPPT 209
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.390e-14
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 2 
Query: 2027 HGSGKW---DEEAQARASG-SVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMR 2272
            HG+ +W    +E     +G   GKQ   R+L HL P   RE WS  EE V++ AQ   GN W  I+ LLPGR++NA+KNHWY+ MR
Sbjct:   44 HGTKRWAVISQELNKELAGFRSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMR 129
[Close]
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Match: A0A452VJE6_URSMA (MYB proto-oncogene, transcription factor n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VJE6_URSMA)

HSP 1 Score: 87.4 bits (215), Expect = 1.670e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 2 
Query: 2027 HGSGKWDEEAQARASGSVGKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHWYTQMRMFIGQRGNNPSSSKPCPPT 2329
            +G  +W   A+    G +GKQ  +R+  HL P+  +  W+ +E+ ++++A K  GN W  I+ LLPGR++NA+KNHW + MR  + Q G    SSK  PPT
Sbjct:  109 YGPKRWSVIAK-HLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASPPT 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ3_ECTSI8.410e-5797.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L686_9PHAE9.050e-5339.03MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S0JKB2_9EUKA8.300e-1639.36Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
MYB_AVIMB2.750e-1539.05Transforming protein Myb n=3 Tax=root TaxID=1 RepI... [more]
A0A896WCD8_MELAB4.630e-1543.33MYB family transcription factor n=1 Tax=Melilotus ... [more]
D2UY60_NAEGR7.970e-1542.68Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
F0XZ12_AURAN9.700e-1547.56Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A452Q9J7_URSAM1.300e-1439.60MYB proto-oncogene, transcription factor n=2 Tax=U... [more]
F0Y4P7_AURAN1.390e-1446.51Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A452VJE6_URSMA1.670e-1439.60MYB proto-oncogene, transcription factor n=1 Tax=U... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:52335..60632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHQ3
PFAMsMyb_DNA-binding
Model size2825
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.42e-58
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006310.1
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size2490
COG categoryADK
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.14.1prot_P-littoralis_Contig787.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 52615..60577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.9442737-UTR-P-littoralis_Contig787:52334..526141680791612.9442737-UTR-P-littoralis_Contig787:52334..52614Pylaiella littoralis U1_48UTRP-littoralis_Contig787 52335..52614 +
1680791613.035476-UTR-P-littoralis_Contig787:60577..606321680791613.035476-UTR-P-littoralis_Contig787:60577..60632Pylaiella littoralis U1_48UTRP-littoralis_Contig787 60578..60632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.9594836-CDS-P-littoralis_Contig787:52614..526741680791612.9594836-CDS-P-littoralis_Contig787:52614..52674Pylaiella littoralis U1_48CDSP-littoralis_Contig787 52615..52674 +
1680791612.971975-CDS-P-littoralis_Contig787:52957..531241680791612.971975-CDS-P-littoralis_Contig787:52957..53124Pylaiella littoralis U1_48CDSP-littoralis_Contig787 52958..53124 +
1680791612.98772-CDS-P-littoralis_Contig787:53523..547571680791612.98772-CDS-P-littoralis_Contig787:53523..54757Pylaiella littoralis U1_48CDSP-littoralis_Contig787 53524..54757 +
1680791612.9990518-CDS-P-littoralis_Contig787:58970..593541680791612.9990518-CDS-P-littoralis_Contig787:58970..59354Pylaiella littoralis U1_48CDSP-littoralis_Contig787 58971..59354 +
1680791613.0100992-CDS-P-littoralis_Contig787:59675..598061680791613.0100992-CDS-P-littoralis_Contig787:59675..59806Pylaiella littoralis U1_48CDSP-littoralis_Contig787 59676..59806 +
1680791613.0218418-CDS-P-littoralis_Contig787:60063..605771680791613.0218418-CDS-P-littoralis_Contig787:60063..60577Pylaiella littoralis U1_48CDSP-littoralis_Contig787 60064..60577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.14.1

>prot_P-littoralis_Contig787.14.1 ID=prot_P-littoralis_Contig787.14.1|Name=mRNA_P-littoralis_Contig787.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=830bp
MQLLHGDDGRFDRFQQHALSQQPNYHDMRMPMGHQHAQLGHTQQQQQQPH
RPYSTGSGALPASDRACFARPLPRDRIAPASHDLSTYDEGDTSSASEDSA
VSSYPSPAMGVKAAAAPVPQVISYNKRAAEPSASFNLPPSQRSRTTAPSL
PRKQSGWQPVSGGTFDSGISVSCSPTTTAASQQQQQQQQQQRQLPRLAAL
ETMLSSRTQLQGKQQPQQEHQQQLHKHRQQPQQLFHQQQHHAGQQEYPVG
AHRSTTPTIRAPMQRSNIPTMQLPPLPASQHNAAVSSILSSSSSTSSRST
SSSPSCSPSPRCSSPPSNNLEHTSGRYQLPLPVCVQGADGTAVVGTSFSG
GSVNQPQHQRWLTRGANISSSCGGSAGDLRRQVPRINALSRSISSGTSCS
DSTTTSRQQQQQQVWETASARLKPAGERMHDGVFFKTTTAAAVSPNFSSA
GAPVCYDRGVEEKRGGSNWPRQHADACAPWSQQQQSQGMIRIQQHPSEAG
RPSSRTPSPVSPAVFRSAGQDHVSRPQQLQHRHDHQHQLPTVASRPSPER
IGAGARSWIPPVVDDGRVAAAAAAVSSVCGEAHGSGKWDEEAQARASGSV
GKQILQRYLTHLYPKASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGR
SENAVKNHWYTQMRMFIGQRGNNPSSSKPCPPTSSRGVSAVAVKSSSGGG
GGGKGSSSSHRQHKRTPTSDDETGDASRLQHQQRRTSVPSSPVAPAPRAP
APTAAPAPAARGVFASFSASDNLGARPGTTTPAAAADEAESFDVAEEKQA
RADAVAALGMLFSQGGSSRSPSPLTANSR*
back to top

mRNA from alignment at P-littoralis_Contig787:52335..60632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.14.1 ID=mRNA_P-littoralis_Contig787.14.1|Name=mRNA_P-littoralis_Contig787.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8298bp|location=Sequence derived from alignment at P-littoralis_Contig787:52335..60632+ (Pylaiella littoralis U1_48)
CGCTTTTCTCACTTTCCACATACCACTATCCCCTTCTCCGGCCATCGACG
GCAGACGAACGCAGAGAGAAGAGGGTGCAACGTACCATCACGGAACGGCA
CGAGAAGTGGCACGAACGCGACCAACTGCACTCTTGTCTCCGCGAAGTAC
AAGGGCAATAGCGCAACAGCAGCAGCAACAGGGGGAGAAGGAATAACAAA
AGGGCATCATCATTACATCTGACATTCCTTCCCCAAACCAAGCACCACCT
AAATCGAGCAAAGTATTGCATCTTTTTGCCATGCAGCTCCTTCATGGAGA
CGACGGACGGTTCGACCGATTCCAGCAGCACGCCTTATCGGTGAGTAAAG
ATTCATGGCTACGGCCGACTGCACATGGCAGTCAAGAAAACTTCGGCGCG
CCTCTCTATCTCTTGTCTGTTGCGACGTACGAGCGAGCTCGCGCAACCCA
GTTTTCGGTGAGGTGTGCCCCTTTGGTATTTTGTCATCAAGTTGTTCTTT
GTGTCCTGGAGGTCTGTAAATCAACGCCTACATTTCATAACCGATAAACG
AGCATAAACTGCCGAAACTTCAGCCATTCTCTTTTTTGTTTTTGTTTCCC
TACGTGTAAAACTCAACCAGCAGCAACAGCCGAACTACCACGATATGCGG
ATGCCTATGGGACATCAGCACGCACAGCTGGGGCACACCCAGCAGCAGCA
GCAGCAGCCGCACCGACCATACAGCACTGGATCGGGAGCGCTGCCAGCGT
CAGACCGGGCTTGTTTTGCGCGACCTCTTCCTCGTGACCGGTGAGTTTCT
TGCTTGGATTTGGATTTTTCTGCTGTTCACGTATACACCCTGCATGAAAA
GACACTTTTCCGTACAACCGTACGCGGTGCGTACCTCGCGTACCCCTCGT
CTGCTTCCCTCGAACTTAGTTTCTCGCCTTCGATGAGGTAACCAGCCCAA
CCAGCCTCATAACGCACCAGAACGCACACCCAACGTATCAGCTCACTTCG
CTTGCCCTCTTGCACGATGTATGCAATGCGTTACGACGAGAGGGAGGGAC
TGAGGCAACCTGGGATGGTTTTTGCGGCGACCCGTCAATCCTCACCAAGA
CTCCACAACGCTCGGCGACACTTCCCTCTCAATCCCTATTATCTTTCTGA
AAGTGATCAAAACGTTCCTGTTTACACGAAAAATATCAGGATCGCACCGG
CCTCGCACGACCTTTCGACCTACGATGAGGGCGACACTTCCTCCGCCTCT
GAAGATTCTGCAGTGAGCAGCTATCCTTCCCCAGCCATGGGCGTCAAAGC
TGCTGCAGCACCAGTGCCTCAAGTCATCTCCTACAACAAGAGGGCAGCCG
AGCCCTCCGCGTCTTTCAACCTGCCTCCATCTCAGCGGTCCCGCACGACT
GCACCTTCTCTGCCTCGGAAACAATCTGGATGGCAGCCAGTCTCGGGAGG
AACTTTCGACAGCGGAATTTCCGTCTCTTGTTCTCCTACAACTACCGCTG
CTTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACTTCCCAGG
CTCGCGGCGCTCGAGACTATGCTTTCTTCGCGGACCCAGCTGCAGGGAAA
GCAGCAACCCCAGCAGGAGCACCAGCAACAACTGCACAAGCACCGTCAGC
AACCGCAACAACTGTTTCATCAGCAACAGCATCACGCGGGCCAGCAAGAA
TATCCCGTTGGCGCACACCGCTCCACAACTCCCACTATCCGAGCACCGAT
GCAAAGATCCAACATTCCAACGATGCAACTGCCACCTCTTCCTGCTTCTC
AGCATAATGCTGCTGTTTCATCAATATTGTCGTCGTCATCATCGACTTCG
TCGCGCTCGACTTCTTCGTCACCTTCGTGCTCTCCCAGCCCGCGCTGCTC
GTCTCCCCCCTCCAACAACCTCGAACATACTAGCGGTCGGTACCAGTTGC
CGCTGCCGGTATGCGTACAGGGGGCAGATGGCACAGCAGTCGTTGGGACT
TCGTTTTCTGGCGGGTCCGTCAACCAACCACAACACCAACGTTGGTTGAC
AAGAGGGGCGAATATCAGTAGCAGCTGCGGTGGCAGCGCCGGCGACCTTC
GGCGCCAGGTGCCGAGGATCAATGCCTTGAGTAGGAGCATCAGCAGTGGC
ACCAGCTGCAGCGACAGCACGACTACATCAAGACAGCAGCAGCAGCAGCA
AGTATGGGAGACGGCGAGCGCCCGTTTGAAGCCCGCAGGGGAAAGGATGC
ATGACGGAGTATTTTTTAAGACCACCACTGCTGCAGCGGTGTCACCGAAC
TTCTCCTCCGCAGGCGCACCAGTGTGCTACGACCGAGGGGTCGAAGAGAA
GAGGGGCGGCAGCAACTGGCCCAGGCAGCACGCTGATGCCTGTGCGCCAT
GGTCACAGCAGCAGCAGTCACAGGTGCGGGGGCTTTTCCAGTCGTCTAAA
TGTCGAGTGTTGGACTGAAGTTTAATCGATCGATCGTTCCCAACTTATGA
ATTATGTTGTGCTTCGAAGTACAATCTTTGTCGCTTTCAACGTCATCTAC
AAGAACAGCAGGATTTTGAGGATATTTGCCGGTTCTATGACAACACACAT
CTGTTCTATCCAGCAGCAAGTGTAGCTCATTAGTGATCGGAATGGCCGGA
AACGAAAGTACCAACTACCTCTACTTGCTGAAGGCAAAGGATTGCATAAT
ATTTGGAGTATACGTTGATCATCCAGTTAAATACTGCAGTAGACATTTAC
CCAAGCTCTGGTGCATGGGTCGTCGTCAGCTCAACCGTCCATGCAACTTC
CGTCCACGAACCACAGGGAACATGCGGGAAAGGTGTTAACAGCACCTGTG
GTCTTGTTGTCAAAGTAGGGAAGTATTTTGTAGACAGCTGGGCAATCAAT
TCATTGACCCACAATAAAGAAACGAAAATAAACTCGCCCCTTTCTTTTTT
ATTCCGGATATTTACAGCAGCAGTAGATAAATGCTCGATACGAACAGAGA
TCTTCTCTCCTTTCGACAGGCATCCGAAGCTGCTCATGTTCGCATGTTTG
TATGTTATGACGAAGTACTTGAGGATTTGGGCTCGCGGGCACACATACAA
AACTTTCTCCGGAATATCATCGAATATGTCATCGCATACTGGCGGTGCGA
CAGAATTGTACAGCAGTTAACCCTGCAGCTCAACAGCACAGCAGTACACG
CAGGAGATTCTGGCTCGATAATTCTCTTCTGCGCTGTTGTCTTCTGTTCG
CGCGTGTTGCCTGCCTCTAATCATCTGTACCTGAAAAAAAATATGGCCTA
TTTCGACGTCCGCGTACCATCACAGCCGTGCACAACGGAGTATATACCAT
ACGACCAGTATCAAAGTCAGACGACTCCGGGATGACTCGTGTTTTTGAAA
AGGTGAAAGCATGCTCTACCCGTATCATATAAACATCAGCCTCCAAGTAT
TTACTGCTCTGTGTAGGATACACGGATCATATATATGGTTCTTCCGAATT
TCTAGAGCATCTCTTTGTCGGTCCGCATTATCCAACTGATTTTTCGTTTT
CGGAGCAGTAAAAGCTTGCAGTCAGAGACCACAAGTGTAGAACTTGCAAG
TAGTGTGAATCATAAACGAATACTCTTGTTGTACAAGATATCATATACTC
TGGACCACGATAGTACAAACCAGTTTGTACGAACCGTATGAATTTTCCCC
CCGCCGGGTGCGGAGCGCTTGCATGTACATACGTACACCTTGTGCAACAG
CAGTCCGAACCGACCGGACAGCCTCGCTCACGTTTAGTGGGCATAGAATA
CTCCGAAGTATGAACACTTGACCGGCATCGCCCAGGTTCACGGTGGATGC
TGACGGAAGATGCTTTCAAAATCAATAGGAGCACGAGCAGTAGTATTTGC
GCGCTCGTTTTTCTCACAACACAAAGTGGAACAAAAATGCCCTCCAATTT
CTCACACGGAGTTCTTTGTGCAGAAGAACAGGGGGTGTGTTGACATCCCA
TTTATTCTTAGCTCCGAACACGTGAAAGTTTTATGTTCTGGTGTGTTGTT
GTTGTTGATTCTCACATTGGCTCATCTCCAAAATCTAGCCCGTGGTCACA
AAAAGTGCTGAGCCCTAGAAAGATCCAAAAAACAGAAAGAAACTACAAGG
GAATACCCAAAAAAGAGCGAAGAAGATACACCTTCCTACGCGGTGTGCAT
CACTGAACTACAGCAGTTACACAGTACCAACACCAAACTACTTCCAGCGT
CGTTCATTTGACTACAACATCGTGTTCAGTCTCCTCCCGCCGCACTTTTA
ACTAATAACCTGCTGTGTCAGTAAGTAGCTGCAGACTTTGTACAGCAGTT
ATTTGCTGTCTGGAGTGCTCCCTGCAACGTCCAAGTAGCCCCGGCAATCG
GAGAAGACAGAAAAAGAAAAAAACACAAAAACACACACGTATCATCAGAT
ATTGTCGAGGATGGTGTCTCCATGCCGTCCTTGCGACGCTGGTGATAATG
TCGTGCTAAATACTTCCTCCTTGTCTGGGTCCACGTTGCTGTTGGCGTTG
CCCAAGGCCACATCACCAGCACCATGCTCTCGTAACGCTTCTTCACTGCC
GGCGTTGCCTTAGGTCACCTCCATCACCGCCGCTCTCTTGACATAACAGC
TCTTTCTTGTTGTTCCTTTCCAATCAGTTCCCTCAAAAACTCCACTGTGC
ACTTGAGGTACAAGTCTTCTGAAAACAAAGTTCACGCTCGGAGTGAGATC
GACCAACCTCGTATGTGTGTGTGTATGTGTGTTCATCCCATTTATTCTTG
GAAACGGTCTACCTTCCGGTATGAAGTGGGTGAACCAGCCAGGGGGTCAC
AGCATTGTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTC
TATCAGACAGGGATACCGACTTTTTGATCACTCCAAGCAGTACGAAGCAC
ATTACCGCTCTCATTTCCTGGGTCTTGCCTTCAATGGGCATGACCGACGC
GCCTTTCAGGTGGTATTTCAACTTGTATGCCAACGTCGTGTTTTATTCCT
CGATCGTGTGTGGACACAACTCAAATACTTGATCCAGTTTACAGAAAAAA
ATGTTGTCCGGTATCCACATTCCGCTGTGACGGGAACATCTTCGTATCGC
CAGTTCGAACTCCTGAAATCTTGACATCCACAATCAGTTCAGTAAGTAAG
CACTACCACGTATTAGCGGATGGAGATTCGGAGATGCGGAGGAAATGTAA
CTACGAAGAATATTTCCAAATACTTTTACTGTAAGACTTCTTGTGTTTTT
TTTACCTACGAAGACATCAGTGTGTTCTCCTCTCCCTAGACTAGGATCCA
GCGAGATTAGCAACGAACACACAGTTAGTAATACATCTTGTGTTTCGACG
ACTCTGTAGATAAAATGTTCCTTCCACATTTTTATGAGTTTAAATGGCGT
CTTCGTGGTGCATGTTATACAATTTTCATTCGAAATCTTACTCTTACCAA
CGGTTTGGGTTTGGTTCCAACTTGCATTTGGCATCACCTCTTGCGGCGTC
AACAAACATGACTGCTGAGCAGATAACAATGTCTCCTCGCCTACCATACG
AGGCTGCGGGCTGTATATACGTCACGCGCCTGCAGCGAACGTATGTTGTG
GTATAATAGGATCAGTAGAGCTTACGAGTATCGGGGCCCAACCGCGGCTC
ACCCACCCATATCACTCCGATGGTTCCCCTAGGAAAAAAATTATCTGCCC
ACCCCTCAAAAACCTCAGATATCCGTACGCTCCTCCGGAACTATCATACC
ATATCTGGGATAAATGTACCGGTTTTTGCGGCGACCTCATCGACGCATTT
TAGATGAAATAGTCTGTCTCCCCCGGACAACAAGGCGTGTCACGTTTTGT
AACGAACGTTCTGGTACCATCTGCATACCTCACAACTTTTAACCTGGTCT
TCGCTCATGTCTTTCATCGTTCAGAGGTCTGGCGACTTCCACTATTTTGC
TACTTTGAAAGCGGCTATGCTGTTAGTAAAATCAGATTCGGCTTCGCCGA
CGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAAATCTCACGCATG
TACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTCCTCCT
GTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCCA
GAGAACATGGGATGACAACACACACTATTCCCCTTTGATCAACCAATACG
CAGACCCTGCCGTTAACGTTTTTCTGACGATTTCCATGAAAAAAAACACA
GAACGAAAGCATCAGCTTGAATTGTATGGTATGTGTCCTGAACTTGGAGT
TCAATAAATATTGTCACAATGCATGCATTCTATAATACCTTCGATTTTGC
CTCGGGTTCTGCCCTTCAACACACGAGACTGCTCGTTGACCACGGACCAC
GGGCTAGATTTCGGCGGCGAGCTAATGCGAGAACCACAACAACAGAAACA
ACGTTCTGTCTTGATCTGTGAGCTTGTGAATCTCGGAAGATCGACACAGC
TACTCGTACGTAAACAGAGGCACGGGAATGTCACACACTACTCGTACACA
ACGCCAACGAAATATACTCTCCCACTATTCCAACAGGGGATGATCCGTAT
CCAGCAGCACCCGTCCGAAGCAGGACGACCGTCTTCCAGGACACCCTCGC
CCGTATCACCAGCGGTATTTCGGTCAGCAGGACAAGACCACGTCTCCAGG
CCGCAGCAGCTGCAGCACCGCCACGACCACCAGCACCAGCTGCCAACAGT
GGCTTCGAGACCATCTCCCGAGAGAATCGGGGCAGGTGCGAGGTCTTGGA
TTCCCCCCGTTGTCGACGACGGCCGTGTGGCGGCGGCGGCGGCAGCGGTG
TCTTCTGTCTGTGGGGAGGCCCACGGCAGCGGCAAGTGGGACGAGGAAGC
GCAGGCCCGTGCGTCGGGCAGCGTCGGCAAGCAGATTCTCCAGCGCTACC
TCACGCACCTCTACCCCAAGGTGTGTGTCTGTGTCTGTGCGTCTGTGTAG
GAAAACGTGCGTACATGTACATACGGAGTAGTTGTTTCGTGTTCGAGAGT
CCGCGTGAAACCTGCTGACGTGCTGACCTTGTAATTGGCAAAAGCCCTTT
TCAGTGCGGGTGTTCACTATCGGTTTCATGTCTCTGGGATGTACCCACGT
GTATCATATGCGCTCTGCAGCCAAACGAGTACAGCGGTGTATCCTTTGTT
TTGGGGGCCTGTTGTGTCACATATACATACATACGCATCTCACGATTTCG
GCCTTCCGTGACCCCCCCCCCCCCCCCGCTCAAATCTACAGGCGAGCAGA
GAGGTGTGGTCGCATGACGAGGAAGAGGTTCTGTGGCGGGCTCAGAAAGA
GTACGGTAACGCGTGGAACTACATCTCGAGCCTTTTGCCTGGGAGGTCGG
AAAACGCGGTCAAGAACCACTGGTAAGTCTGAGTCGCTATCCTTGATCAT
ATTGTGAAACTTTGTCCCACACGAGTGAAAGTTGCTTGCGTTACGTACTG
CTGTATGCATGAAAAATTTTGATTTTGATTTTGTCGGAACTGCTTGCTGC
TGTGTTGGTGGTCAACAAGTGCTGCCCGTCTAGAAAAAAATACTTCGGAG
GTATGATATGATTCACACAACTGACCAACCCCCACCCCACCCCCCTCCCC
TCCGCCTCCCCTCCCCCTACGAACCCCAGGTACACCCAGATGCGAATGTT
CATTGGGCAGAGAGGGAACAACCCGTCCAGCTCCAAGCCTTGCCCTCCCA
CCTCGTCCAGGGGGGTTTCGGCCGTAGCAGTCAAGTCCTCCTCCGGGGGC
GGCGGCGGCGGCAAGGGCAGCAGCAGCAGCCACCGCCAACACAAGCGAAC
GCCAACCTCCGACGATGAAACTGGCGATGCGTCCAGGCTCCAGCACCAGC
AGCGCCGCACAAGCGTGCCCAGCTCTCCGGTAGCACCTGCACCACGAGCG
CCGGCACCGACAGCAGCACCAGCACCAGCAGCACGAGGAGTATTTGCCTC
CTTTTCTGCGTCGGACAACTTAGGAGCGAGACCCGGAACGACAACCCCTG
CTGCGGCTGCCGACGAAGCGGAATCCTTCGACGTGGCGGAGGAGAAACAG
GCTCGTGCAGACGCGGTTGCCGCTCTCGGCATGCTGTTTTCGCAGGGAGG
ATCTTCGCGTTCACCTTCTCCGTTGACGGCGAACAGTCGGTAGTAGCCAG
GCCGACATACATTTGAATATTTTTAGCACGTTGTGGCTTGACTGCGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig787:52335..60632+

>mRNA_P-littoralis_Contig787.14.1 ID=mRNA_P-littoralis_Contig787.14.1|Name=mRNA_P-littoralis_Contig787.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2490bp|location=Sequence derived from alignment at P-littoralis_Contig787:52335..60632+ (Pylaiella littoralis U1_48)
ATGCAGCTCCTTCATGGAGACGACGGACGGTTCGACCGATTCCAGCAGCA
CGCCTTATCGCAACAGCCGAACTACCACGATATGCGGATGCCTATGGGAC
ATCAGCACGCACAGCTGGGGCACACCCAGCAGCAGCAGCAGCAGCCGCAC
CGACCATACAGCACTGGATCGGGAGCGCTGCCAGCGTCAGACCGGGCTTG
TTTTGCGCGACCTCTTCCTCGTGACCGGATCGCACCGGCCTCGCACGACC
TTTCGACCTACGATGAGGGCGACACTTCCTCCGCCTCTGAAGATTCTGCA
GTGAGCAGCTATCCTTCCCCAGCCATGGGCGTCAAAGCTGCTGCAGCACC
AGTGCCTCAAGTCATCTCCTACAACAAGAGGGCAGCCGAGCCCTCCGCGT
CTTTCAACCTGCCTCCATCTCAGCGGTCCCGCACGACTGCACCTTCTCTG
CCTCGGAAACAATCTGGATGGCAGCCAGTCTCGGGAGGAACTTTCGACAG
CGGAATTTCCGTCTCTTGTTCTCCTACAACTACCGCTGCTTCTCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACGGCAACTTCCCAGGCTCGCGGCGCTC
GAGACTATGCTTTCTTCGCGGACCCAGCTGCAGGGAAAGCAGCAACCCCA
GCAGGAGCACCAGCAACAACTGCACAAGCACCGTCAGCAACCGCAACAAC
TGTTTCATCAGCAACAGCATCACGCGGGCCAGCAAGAATATCCCGTTGGC
GCACACCGCTCCACAACTCCCACTATCCGAGCACCGATGCAAAGATCCAA
CATTCCAACGATGCAACTGCCACCTCTTCCTGCTTCTCAGCATAATGCTG
CTGTTTCATCAATATTGTCGTCGTCATCATCGACTTCGTCGCGCTCGACT
TCTTCGTCACCTTCGTGCTCTCCCAGCCCGCGCTGCTCGTCTCCCCCCTC
CAACAACCTCGAACATACTAGCGGTCGGTACCAGTTGCCGCTGCCGGTAT
GCGTACAGGGGGCAGATGGCACAGCAGTCGTTGGGACTTCGTTTTCTGGC
GGGTCCGTCAACCAACCACAACACCAACGTTGGTTGACAAGAGGGGCGAA
TATCAGTAGCAGCTGCGGTGGCAGCGCCGGCGACCTTCGGCGCCAGGTGC
CGAGGATCAATGCCTTGAGTAGGAGCATCAGCAGTGGCACCAGCTGCAGC
GACAGCACGACTACATCAAGACAGCAGCAGCAGCAGCAAGTATGGGAGAC
GGCGAGCGCCCGTTTGAAGCCCGCAGGGGAAAGGATGCATGACGGAGTAT
TTTTTAAGACCACCACTGCTGCAGCGGTGTCACCGAACTTCTCCTCCGCA
GGCGCACCAGTGTGCTACGACCGAGGGGTCGAAGAGAAGAGGGGCGGCAG
CAACTGGCCCAGGCAGCACGCTGATGCCTGTGCGCCATGGTCACAGCAGC
AGCAGTCACAGGGGATGATCCGTATCCAGCAGCACCCGTCCGAAGCAGGA
CGACCGTCTTCCAGGACACCCTCGCCCGTATCACCAGCGGTATTTCGGTC
AGCAGGACAAGACCACGTCTCCAGGCCGCAGCAGCTGCAGCACCGCCACG
ACCACCAGCACCAGCTGCCAACAGTGGCTTCGAGACCATCTCCCGAGAGA
ATCGGGGCAGGTGCGAGGTCTTGGATTCCCCCCGTTGTCGACGACGGCCG
TGTGGCGGCGGCGGCGGCAGCGGTGTCTTCTGTCTGTGGGGAGGCCCACG
GCAGCGGCAAGTGGGACGAGGAAGCGCAGGCCCGTGCGTCGGGCAGCGTC
GGCAAGCAGATTCTCCAGCGCTACCTCACGCACCTCTACCCCAAGGCGAG
CAGAGAGGTGTGGTCGCATGACGAGGAAGAGGTTCTGTGGCGGGCTCAGA
AAGAGTACGGTAACGCGTGGAACTACATCTCGAGCCTTTTGCCTGGGAGG
TCGGAAAACGCGGTCAAGAACCACTGGTACACCCAGATGCGAATGTTCAT
TGGGCAGAGAGGGAACAACCCGTCCAGCTCCAAGCCTTGCCCTCCCACCT
CGTCCAGGGGGGTTTCGGCCGTAGCAGTCAAGTCCTCCTCCGGGGGCGGC
GGCGGCGGCAAGGGCAGCAGCAGCAGCCACCGCCAACACAAGCGAACGCC
AACCTCCGACGATGAAACTGGCGATGCGTCCAGGCTCCAGCACCAGCAGC
GCCGCACAAGCGTGCCCAGCTCTCCGGTAGCACCTGCACCACGAGCGCCG
GCACCGACAGCAGCACCAGCACCAGCAGCACGAGGAGTATTTGCCTCCTT
TTCTGCGTCGGACAACTTAGGAGCGAGACCCGGAACGACAACCCCTGCTG
CGGCTGCCGACGAAGCGGAATCCTTCGACGTGGCGGAGGAGAAACAGGCT
CGTGCAGACGCGGTTGCCGCTCTCGGCATGCTGTTTTCGCAGGGAGGATC
TTCGCGTTCACCTTCTCCGTTGACGGCGAACAGTCGGTAG
back to top