mRNA_P-littoralis_Contig1199.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1199.10.1
Unique NamemRNA_P-littoralis_Contig1199.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1199.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1199contigP-littoralis_Contig1199:47887..48307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size421
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.0221267-UTR-P-littoralis_Contig1199:47886..479861680789504.0221267-UTR-P-littoralis_Contig1199:47886..47986Pylaiella littoralis U1_48UTRP-littoralis_Contig1199 47887..47986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789504.031466-CDS-P-littoralis_Contig1199:47986..483071680789504.031466-CDS-P-littoralis_Contig1199:47986..48307Pylaiella littoralis U1_48CDSP-littoralis_Contig1199 47987..48307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1199.10.1prot_P-littoralis_Contig1199.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1199 47987..48307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1199.10.1

>prot_P-littoralis_Contig1199.10.1 ID=prot_P-littoralis_Contig1199.10.1|Name=mRNA_P-littoralis_Contig1199.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MGWALGCRAPPKTDRRPTRSRKVTKRQRSKALSLLYHLLSRCAFPPICAH
VLLSLILTLAHYGRSLARGHKPGTYRARRKKNVHVQPEMIVKNTLFIRAK
RDSILA*
back to top

mRNA from alignment at P-littoralis_Contig1199:47887..48307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1199.10.1 ID=mRNA_P-littoralis_Contig1199.10.1|Name=mRNA_P-littoralis_Contig1199.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=421bp|location=Sequence derived from alignment at P-littoralis_Contig1199:47887..48307+ (Pylaiella littoralis U1_48)
GTGAGACCATGCACGCAAATGTCCGCGAAAACCGACACTTGGGCGTTTGT
AGACACATGACGATATGCAGCGGCGGTGCAAGTAGAATTGCGGGAAAGAC
ATGGGGTGGGCTCTAGGCTGTCGGGCGCCTCCGAAGACGGATAGGCGTCC
CACGAGGTCGAGAAAGGTCACAAAAAGACAACGATCGAAGGCACTATCCT
TGTTGTACCATCTATTATCTCGCTGCGCTTTCCCCCCGATCTGTGCACAT
GTGTTGTTGTCGTTGATTCTCACATTAGCTCACTACGGCCGCAGTCTAGC
CCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAATGTGC
ATGTACAACCCGAAATGATAGTGAAAAATACACTTTTTATTCGAGCGAAG
AGAGATTCTATTCTTGCCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1199:47887..48307+

>mRNA_P-littoralis_Contig1199.10.1 ID=mRNA_P-littoralis_Contig1199.10.1|Name=mRNA_P-littoralis_Contig1199.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1199:47887..48307+ (Pylaiella littoralis U1_48)
ATGGGGTGGGCTCTAGGCTGTCGGGCGCCTCCGAAGACGGATAGGCGTCC
CACGAGGTCGAGAAAGGTCACAAAAAGACAACGATCGAAGGCACTATCCT
TGTTGTACCATCTATTATCTCGCTGCGCTTTCCCCCCGATCTGTGCACAT
GTGTTGTTGTCGTTGATTCTCACATTAGCTCACTACGGCCGCAGTCTAGC
CCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAATGTGC
ATGTACAACCCGAAATGATAGTGAAAAATACACTTTTTATTCGAGCGAAG
AGAGATTCTATTCTTGCCTGA
back to top