mRNA_P-littoralis_Contig787.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.2.1
Unique NamemRNA_P-littoralis_Contig787.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig787.2.1 vs. uniprot
Match: A0A6H5L7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.510e-33
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 NVLEGFLYSTLVDGSGLVLDKLDSDGKGRKRGERILSYDPEMLRLKWMSTGIRRKSGSMLAKDIDDVLCEGTSVTIL 231
            +VLEGFLYSTLVDGSGLVLDKLDSDG G+K GERILSYDP+ +RL W+STG+RRK+GSMLAKDI +V CEGTS + L
Sbjct:  170 DVLEGFLYSTLVDGSGLVLDKLDSDGSGKKSGERILSYDPDQMRLNWISTGLRRKTGSMLAKDIGEVTCEGTSASKL 246
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I9_9PHAE2.510e-3377.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:3178..4503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size263
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.720076-CDS-P-littoralis_Contig787:3178..32531680791612.720076-CDS-P-littoralis_Contig787:3178..3253Pylaiella littoralis U1_48CDSP-littoralis_Contig787 3179..3253 -
1680791612.7304797-CDS-P-littoralis_Contig787:3962..40521680791612.7304797-CDS-P-littoralis_Contig787:3962..4052Pylaiella littoralis U1_48CDSP-littoralis_Contig787 3963..4052 -
1680791612.7438438-CDS-P-littoralis_Contig787:4407..45031680791612.7438438-CDS-P-littoralis_Contig787:4407..4503Pylaiella littoralis U1_48CDSP-littoralis_Contig787 4408..4503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.2.1prot_P-littoralis_Contig787.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 3179..4503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.2.1

>prot_P-littoralis_Contig787.2.1 ID=prot_P-littoralis_Contig787.2.1|Name=mRNA_P-littoralis_Contig787.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
NVLEGFLYSTLVDGSGLVLDKLDSDGKGRKRGERILSYDPEMLRLKWMST
GIRRKSGSMLAKDIDDVLCEGTSVTILYSTPLGAGTS
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mRNA from alignment at P-littoralis_Contig787:3178..4503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.2.1 ID=mRNA_P-littoralis_Contig787.2.1|Name=mRNA_P-littoralis_Contig787.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1326bp|location=Sequence derived from alignment at P-littoralis_Contig787:3178..4503- (Pylaiella littoralis U1_48)
AATGTTTTGGAAGGGTTTCTGTACTCTACGCTGGTGGACGGCAGTGGCCT
CGTCTTAGATAAGCTCGACTCGGACGGAAAGGGAAGGAAGCGCGGGGTGA
GTTGAGAGAGAAACGTTGCCGTATACCTATCTATGCCGTGCTCACCCTAC
CCGTGAGAGTTTTGTTGTTTGGTTGTCACGTGCGTGCGTGTGTGCATGCA
CCTGTGTGTATGTGTGTGTTTGCCACTGGGCTGAATCAAATAGTGAAGTG
AGTAGACTGCGAGAAAAAATGAGACACAAAATATGTCAGCCCCAAACGGA
TGCTGTTGAACACTATAATGACCGTTTCACCCGTTGGAGCATGCCATGCA
TGCATGCCCAAAACGCGTTCTTATTTTCTTCACAAAAACAAATTCGGTAC
ATTGGTGGAAAAAACGTTTCACGCGGGACAGCCCCTTCCCCCTCCGGGCA
GGAACGGATCTTGTCTTATGATCCGGAAATGCTGAGGCTGAAGTGGATGT
CGACGGGCATCCGCCGTAAGTCAGGAAGCATGCTAGCCAAGGTGTGTGAA
ATAAAAGGGAGACGTGTGTGTGTGGATCCGTGTGAGTGGGGTCTATGTCC
GTGTGAGTGGGGCCTATATCTGTCTGTTTATCTATCTGTCTATCTGTCTG
TCTGTCTATTATCTGTCTTTTATTTGATCAAACCTTACCCTGTCCTGTAA
ATACCGCCGTAGATACTATCACCTCTACAGACATTATTGTGTGCCAAATA
TAACAAACGAACAACCACCGAGGTTTAAGTATATATTAATGCTTGCACTT
GCAGTATCCACAATATATGTACGGAGTGAGGTAGCATTCTGTGTGGTGTA
CGTATCTCACCAACATATAAAGATAATTCACAGGACCATGGAGATCGACA
TGCTGTGCAAACGATTTGTTCGAGTGCACCCGCCGTTTCGACATCAAGCT
AACTGACGGGACGAGGCAGGAAATATAGCAGAACAGTCGTCGCATAGAGC
AGATGGGGCGAACAAACGCAAGCACGAATATATATCTGCAATAGTGTAGG
TTGAGTTCCATACGGGACGGGTAAATGCAAGCACGAGATCCTGATGTATG
TATGAATGTCAGAAACACAAACAACTGTCCTCTACAACAGTATTTATAGT
CACTTCGAAGTGTGTAGAATATACTTCAAGCTTGGAAGTATCTAAGATGT
GCGTTCTCTGCTCTGCTCGTCTTTCCTTTTCTCTTCCCTTCTCTTGACAG
GACATTGACGACGTCCTCTGCGAAGGCACATCGGTAACCATCCTCTACTC
AACCCCCCTGGGTGCCGGCACCTCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:3178..4503-

>mRNA_P-littoralis_Contig787.2.1 ID=mRNA_P-littoralis_Contig787.2.1|Name=mRNA_P-littoralis_Contig787.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig787:3178..4503- (Pylaiella littoralis U1_48)
AATGTTTTGGAAGGGTTTCTGTACTCTACGCTGGTGGACGGCAGTGGCCT
CGTCTTAGATAAGCTCGACTCGGACGGAAAGGGAAGGAAGCGCGGGGAAC
GGATCTTGTCTTATGATCCGGAAATGCTGAGGCTGAAGTGGATGTCGACG
GGCATCCGCCGTAAGTCAGGAAGCATGCTAGCCAAGGACATTGACGACGT
CCTCTGCGAAGGCACATCGGTAACCATCCTCTACTCAACCCCCCTGGGTG
CCGGCACCTCG
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