mRNA_P-littoralis_Contig787.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.38.1
Unique NamemRNA_P-littoralis_Contig787.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig787.38.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.300e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 3 
Query:    9 LSFFPVAAIRRVVHIVHDCPATGASACGLVSDGNNRSVWQCKLDKRSRYLLNGYFHSIVRDPI 197
            L+F+P  AIRRVVH++H CP +G SACGLV +   +  W+C L   S YLLN YFHS  RD I
Sbjct:  365 LTFYPTPAIRRVVHMMHACPTSGESACGLVRESKRQ--WRCNLLGTSTYLLNKYFHSPGRDSI 425
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LF20_9PHAE8.300e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:79655..80426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size375
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.5060234-CDS-P-littoralis_Contig787:79654..798591680791612.5060234-CDS-P-littoralis_Contig787:79654..79859Pylaiella littoralis U1_48CDSP-littoralis_Contig787 79655..79859 +
1680791612.51923-CDS-P-littoralis_Contig787:80258..803111680791612.51923-CDS-P-littoralis_Contig787:80258..80311Pylaiella littoralis U1_48CDSP-littoralis_Contig787 80259..80311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.5320177-UTR-P-littoralis_Contig787:80311..804261680791612.5320177-UTR-P-littoralis_Contig787:80311..80426Pylaiella littoralis U1_48UTRP-littoralis_Contig787 80312..80426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.38.1prot_P-littoralis_Contig787.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 79655..80311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.38.1

>prot_P-littoralis_Contig787.38.1 ID=prot_P-littoralis_Contig787.38.1|Name=mRNA_P-littoralis_Contig787.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
AASCPSSLSQPYDESCISCTTALLQELLHVVWSATATTAQCGSVNWTSDR
ATSSTATSTASCVTPLPRCHFQPAFRNGAAGSSGS*
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mRNA from alignment at P-littoralis_Contig787:79655..80426+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.38.1 ID=mRNA_P-littoralis_Contig787.38.1|Name=mRNA_P-littoralis_Contig787.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=772bp|location=Sequence derived from alignment at P-littoralis_Contig787:79655..80426+ (Pylaiella littoralis U1_48)
GCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGCAT
ATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTCAG
CGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGC
GCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTGCC
TAGATGTGAGTCCACGCGATTGGATTGAAAGATATTCGCCACCTCCCCTC
CTCCCAGACAACCCTATTGTTATATCCTATAAGCCATGAACGGCACGCTG
TGGTTTGCAAATAACACCAAATTTTACCCCCGCTCCCCCGCTCTGAAACC
AAGTGCGGTCGAAAGTCGTCAGCGATGGGGAACACATGTTCCGACGGGAC
GCAAAAGTAAAATCCAATCATCTCATTTTTTAGTTTCATGCGTACTTGAA
CGAACACCGAGACCGCTGATCGGTTGTTTCTCCGTGGTAGAATGCGCCAA
AGACTTTTAAAAGGGGCTGTGATATCCGGAAGAGTAATATTCACACTCCT
CGACGACCCCCCCCCCAACTACAACTGCCACCGACTTCCACCGATATTTA
GCAGGTCATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGCGG
TAGTTGAGATACCGACGTCCTGCTCGTTGTAGGCGGAAGGGCGGGTGTAG
CGGCGGGGCTTCTTTCTACCGATGCGTTTTGGATGGATGTTGCGGCTCGT
CGTCCAACGCGCACCGGCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:79655..80426+

>mRNA_P-littoralis_Contig787.38.1 ID=mRNA_P-littoralis_Contig787.38.1|Name=mRNA_P-littoralis_Contig787.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig787:79655..80426+ (Pylaiella littoralis U1_48)
GCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGCAT
ATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTCAG
CGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGC
GCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTGCC
TAGATGTCATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGCG
GTAGTTGA
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