mRNA_P-littoralis_Contig787.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.25.1
Unique NamemRNA_P-littoralis_Contig787.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:68882..69804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.326295-UTR-P-littoralis_Contig787:68881..691131680791612.326295-UTR-P-littoralis_Contig787:68881..69113Pylaiella littoralis U1_48UTRP-littoralis_Contig787 68882..69113 -
1680791612.3614607-UTR-P-littoralis_Contig787:69778..698041680791612.3614607-UTR-P-littoralis_Contig787:69778..69804Pylaiella littoralis U1_48UTRP-littoralis_Contig787 69779..69804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.336298-CDS-P-littoralis_Contig787:69113..693531680791612.336298-CDS-P-littoralis_Contig787:69113..69353Pylaiella littoralis U1_48CDSP-littoralis_Contig787 69114..69353 -
1680791612.3512983-CDS-P-littoralis_Contig787:69667..697781680791612.3512983-CDS-P-littoralis_Contig787:69667..69778Pylaiella littoralis U1_48CDSP-littoralis_Contig787 69668..69778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.25.1prot_P-littoralis_Contig787.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 69114..69778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.25.1

>prot_P-littoralis_Contig787.25.1 ID=prot_P-littoralis_Contig787.25.1|Name=mRNA_P-littoralis_Contig787.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MPNEDVAAYFMKEVGQTWSPALKTLIAVSLLKESGLPIQVGSSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYK
EGGGELNKAQFSGKNS*
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mRNA from alignment at P-littoralis_Contig787:68882..69804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.25.1 ID=mRNA_P-littoralis_Contig787.25.1|Name=mRNA_P-littoralis_Contig787.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=923bp|location=Sequence derived from alignment at P-littoralis_Contig787:68882..69804- (Pylaiella littoralis U1_48)
AGGACATTGCACGCAAGTCCAAGACCATGCCGAATGAGGACGTCGCCGCG
TACTTCATGAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTT
GATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTG
TTGCTCCAGCGGTTTTCACTCAAGCGCCCCCCCGCCAAACGCGTGTCACT
CAAGTTATTATTTCAACCAAATGAGTTACCATCGTGCTTAAGAATTATGA
ACTGGTCGGCAAGCAGCGGAAGATATGATGCCGTGTGTAGCGAGATGGCG
TGTATCGTTCTTTCATGGCTTTAATGGTACCCCAATCCAGGCGATGCTGG
GCCGTTCCAGCTCGGTACATGTATTTACGGTCATGCGCTCCCCCGGCTAT
AACCTTACCCCTATGCTTGCTATTGTCATTTTGTTTTTCGCACTGCGACA
GATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACAAAGGCTGTGG
CGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGTACTGCCGTTC
TTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGCCATTGTCGA
TCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGGAGGGCGGTG
GCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTAATAACCTTTT
AGAGCAACATGACCTGCTTTGTGCAGCCATGGATTGCACTTATTCTCAAC
GCTTGCGGTGAAGTTTGGTGCTTCCCGGGAAGACGTGTGGCACATCCTCG
ATAAGGAGTGTGTAGCAAGGCCTACACGACGAGTAGACAAGCTTTGCTTT
CGCCCCCCCCAGCACACACACGCATTTCAAGAAACTTTGGTGGATTTCAC
AGAGGGTGTTTGGGTGAACTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:68882..69804-

>mRNA_P-littoralis_Contig787.25.1 ID=mRNA_P-littoralis_Contig787.25.1|Name=mRNA_P-littoralis_Contig787.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig787:68882..69804- (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGAAAGAAGTGGGGCAGAC
GTGGTCTCCGGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAG
GAGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTA
A
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