mRNA_P-littoralis_Contig787.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.22.1
Unique NamemRNA_P-littoralis_Contig787.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:66554..67642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791612.2591026-CDS-P-littoralis_Contig787:66554..666781680791612.2591026-CDS-P-littoralis_Contig787:66554..66678Pylaiella littoralis U1_48CDSP-littoralis_Contig787 66555..66678 -
1680791612.2758663-CDS-P-littoralis_Contig787:67089..671801680791612.2758663-CDS-P-littoralis_Contig787:67089..67180Pylaiella littoralis U1_48CDSP-littoralis_Contig787 67090..67180 -
1680791612.2862418-CDS-P-littoralis_Contig787:67542..676421680791612.2862418-CDS-P-littoralis_Contig787:67542..67642Pylaiella littoralis U1_48CDSP-littoralis_Contig787 67543..67642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.22.1prot_P-littoralis_Contig787.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 66555..67642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.22.1

>prot_P-littoralis_Contig787.22.1 ID=prot_P-littoralis_Contig787.22.1|Name=mRNA_P-littoralis_Contig787.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
GSVRHGCSWIWWTSGGCSLSAVETPPPTRCSPRATAKAGHGREQSTCLCM
MWCVASSCSTAAARMLENVQVWAIDCLGDIPSPATITSAQDARRYLKPYL
FKPRS
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mRNA from alignment at P-littoralis_Contig787:66554..67642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.22.1 ID=mRNA_P-littoralis_Contig787.22.1|Name=mRNA_P-littoralis_Contig787.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig787:66554..67642- (Pylaiella littoralis U1_48)
GGTTCCGTGCGGCACGGGTGCTCGTGGATCTGGTGGACAAGTGGAGGGTG
CTCCCTATCGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAG
GTGCGTGCCCGAATAGAACCCCATCGTGTACTACCTCGGCGAGCGCTCTG
TAGTGTCATGTGTACACGTGCGGTAGGTGCATGTATTTTCTGGGGTGGCA
CCTAACCTGTACCTGGTATATCCACACCTCAGATGAGCTGTAGCGGTACA
TGCGTGTTTGTAGATATTTTTTTCGGTTATCACATGTCAAATCAACCCGA
CGTTGTCCTGGCTTGATGTTTGTGTGTGTGTGCTTTAAATCATATTTCAT
AGAGCAAAGGAGGACACCTCACACGCACGACACATCCACTTGTGGCTGCT
GTGGAAGAGTTGACACAATTTTTTGTGTGTCTTGCTTTTGACTATTGGCT
CTTCTGCAGCAGCTACAGCTAAAGCTGGACATGGCAGGGAGCAATCGACG
TGCTTGTGTATGATGTGGTGTGTTGCCTCTTCTTGTAGCACAGCAGCAGC
TAGGTATGTTTGTTACAGCAGGTCGCATTTCCGTCACGTATTCTGGCACC
GTGCACTTTCTACTGCGACCGCTGGAAGACTCAGTGCCGGCTCTTCTACA
ACAGCAGCAGTTGTGTATATGTTGCGTGTGCACGTTTGTATTCTGTGTGC
GGGAGGCCATCGCCACCCAGCCGAGTGCGTGATGACGCTTGGCCCCAAAA
ACGTATTTGCTTCCTGTGCAGTTTTTTCCCTTTCATCAATAGGATGGTTG
CCAACTATGACATCCTTCTCGGCAAGCACTCCACTTGGAGTTGTACAGGA
ATATGTATATTTATATTTACGCTTGTTCCCGTTGAGGTTATTGAAAAGCT
GATTAATGCTGGCTCGCTGTTGACAACACTGTCTTTCGTCCATGGGATCT
GACCAAACGCGCAGGATGCTAGAAAATGTTCAGGTTTGGGCGATCGACTG
CCTGGGTGACATCCCCTCCCCGGCGACCATCACCTCCGCGCAAGACGCGC
GCAGGTACCTCAAGCCGTACCTCTTCAAGCCTCGCTCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:66554..67642-

>mRNA_P-littoralis_Contig787.22.1 ID=mRNA_P-littoralis_Contig787.22.1|Name=mRNA_P-littoralis_Contig787.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig787:66554..67642- (Pylaiella littoralis U1_48)
GGTTCCGTGCGGCACGGGTGCTCGTGGATCTGGTGGACAAGTGGAGGGTG
CTCCCTATCGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAG
CTACAGCTAAAGCTGGACATGGCAGGGAGCAATCGACGTGCTTGTGTATG
ATGTGGTGTGTTGCCTCTTCTTGTAGCACAGCAGCAGCTAGGATGCTAGA
AAATGTTCAGGTTTGGGCGATCGACTGCCTGGGTGACATCCCCTCCCCGG
CGACCATCACCTCCGCGCAAGACGCGCGCAGGTACCTCAAGCCGTACCTC
TTCAAGCCTCGCTCG
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