mRNA_P-littoralis_Contig784.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig784.13.1
Unique NamemRNA_P-littoralis_Contig784.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig784.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig784contigP-littoralis_Contig784:126411..127319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791610.4816363-CDS-P-littoralis_Contig784:126412..1264411680791610.4816363-CDS-P-littoralis_Contig784:126412..126441Pylaiella littoralis U1_48CDSP-littoralis_Contig784 126413..126441 -
1680791610.4922426-CDS-P-littoralis_Contig784:127102..1273191680791610.4922426-CDS-P-littoralis_Contig784:127102..127319Pylaiella littoralis U1_48CDSP-littoralis_Contig784 127103..127319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig784.13.1prot_P-littoralis_Contig784.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig784 126413..127319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig784.13.1

>prot_P-littoralis_Contig784.13.1 ID=prot_P-littoralis_Contig784.13.1|Name=mRNA_P-littoralis_Contig784.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
SFRALGDQHAKHVTDLSEEDPRSGGSDELESAELPVASTRKVEGQGKPVP
AAKRTRKSSKWSLGQNSTLVAMCLQHRVWSVS
back to top

mRNA from alignment at P-littoralis_Contig784:126411..127319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig784.13.1 ID=mRNA_P-littoralis_Contig784.13.1|Name=mRNA_P-littoralis_Contig784.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig784:126411..127319- (Pylaiella littoralis U1_48)
TCGTTTAGAGCTCTGGGCGACCAACACGCCAAACATGTGACAGACTTGTC
GGAAGAGGACCCGCGGAGTGGAGGAAGTGATGAGCTCGAGAGCGCGGAGT
TGCCTGTGGCGTCGACACGAAAGGTTGAGGGACAGGGCAAGCCGGTGCCC
GCGGCTAAGCGCACCAGGAAGAGCAGCAAGTGGTCTTTGGGCCAGAATTC
CACTCTGGTCGCCATGTGTGAGTGCCGTACATACAAGTACCAGTTGCGTC
ATGATGTGGTTGTGCGCGCGCGCCAGCTGTGCTACTATGTAGCTCATGCA
CCAGAGAGAAACTCACTGTGCGCAGGCATCAGAGAAGCTGTGTGCAGACC
CAGCCCGCACAAGGTTGTGGACCGAATCAGGACACTAGCTAGCAGGGGCT
GGTGCGGGCCTGCGTGTTGCTGCGGCTATCTTTCGTCCTCGCTCTCGTCT
CCCTGACGTGGTGATCAAAAAAATTGAGAAGCGTTCTCAAGTATGACACT
TGGCATGATCAAAACATGACAAAAAACACTCAAAAAATGATTATGGAAAA
CATCCTGATGTACTGCTGTGAGAAGACACGAAACCGAGAGATGAATACAG
CGTTTATCGTACTTCGAAGTACTATTTTATCATACTTCGAAGCACAACAC
ACACAAGGGATGACAACACACACACTTCGTATATCCCATCATACCTGTAC
TTCGGTTATCGTAGTACCCTGTGATTTTTGCAATTCACAGTTGAACTCAA
AATTAAACTGGGCACACATGATGATTGTTACGTACGCATAGTCTACAGCA
GTAGATTATATTGCTGTACGTTCACTGCTGTATTTGTTTTTTTGTTTTTT
GTTTCAATTACCCCAACCCCGTTGGCAGGCCTGCAGCATAGAGTCTGGTC
TGTTTCTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig784:126411..127319-

>mRNA_P-littoralis_Contig784.13.1 ID=mRNA_P-littoralis_Contig784.13.1|Name=mRNA_P-littoralis_Contig784.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig784:126411..127319- (Pylaiella littoralis U1_48)
TCGTTTAGAGCTCTGGGCGACCAACACGCCAAACATGTGACAGACTTGTC
GGAAGAGGACCCGCGGAGTGGAGGAAGTGATGAGCTCGAGAGCGCGGAGT
TGCCTGTGGCGTCGACACGAAAGGTTGAGGGACAGGGCAAGCCGGTGCCC
GCGGCTAAGCGCACCAGGAAGAGCAGCAAGTGGTCTTTGGGCCAGAATTC
CACTCTGGTCGCCATGTGCCTGCAGCATAGAGTCTGGTCTGTTTCT
back to top