mRNA_P-littoralis_Contig784.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig784.5.1
Unique NamemRNA_P-littoralis_Contig784.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig784.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig784contigP-littoralis_Contig784:57904..60074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size428
Hectar predicted targeting categoryother localisation
Exons2
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791610.4359076-CDS-P-littoralis_Contig784:57903..580131680791610.4359076-CDS-P-littoralis_Contig784:57903..58013Pylaiella littoralis U1_48CDSP-littoralis_Contig784 57904..58013 +
1680791610.4487493-CDS-P-littoralis_Contig784:59758..600741680791610.4487493-CDS-P-littoralis_Contig784:59758..60074Pylaiella littoralis U1_48CDSP-littoralis_Contig784 59759..60074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig784.5.1prot_P-littoralis_Contig784.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig784 57904..60074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig784.5.1

>prot_P-littoralis_Contig784.5.1 ID=prot_P-littoralis_Contig784.5.1|Name=mRNA_P-littoralis_Contig784.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
QSREKRHISSACVCSDHTTFDTRESHHIWRHGKQRPRQHRPRTPIWRTLW
QLVHQAPRPPEWPWQHQLLLQTPRASPISCTRTVIFRAHSRQPTRRRCGR
ASPTASRRACATRPMQPACTKRPSPMDSRPRQRPRPSSWRLP
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mRNA from alignment at P-littoralis_Contig784:57904..60074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig784.5.1 ID=mRNA_P-littoralis_Contig784.5.1|Name=mRNA_P-littoralis_Contig784.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2171bp|location=Sequence derived from alignment at P-littoralis_Contig784:57904..60074+ (Pylaiella littoralis U1_48)
CAATCAAGAGAGAAACGACACATCAGTTCAGCTTGCGTTTGCAGTGATCA
CACCACGTTCGACACGAGAGAATCTCATCACATTTGGCGCCACGGCAAGC
AACGTCCACGGTGAGCTGTCTGTCGTCTAAGTATCTCCTCTCTGTTCCTG
AGCTCCTTCGACCGCTCCTCCCCCCCCGCCTTTTACTTTCAGATCGTACT
GGTTTCAGTGCAGCCACTGCTGAAACATTTTGTTCTTAGTATTCCCAGTA
TAAACTGGTCCGCTGTCTTCGTAGTTTCATAATTTTGTTTCGTGATCGAA
CATCCGAGTACGTACCGAGATGTCTCCGGATTCAGTTTCCTCCAGCCCTG
TGCACAACCGTACTAGCAACAGCAGTGATAGCCCGGCGGGTGCCACGGTA
TCGCTTGCTGCTTCATCTAGTCACGGTAGTGAGCTTGACAGTGTGCTCTC
GCTCGAAGCGGAAAACGCAGAGTCGCTTCAGCATGAAACTGCTGCAGCAG
CCGACCACATGATGAGTTCCGTTGAGTTGCACACACACACAGGCATTCAC
ACTCAAACCATGGCCACGGCTTCGCAAGTCTCGGCCATGAGTGGTGCACT
ACCTCTTGCGGTAGCGCCTCCAATTGCTGTAGAATCAGGCCCTGATGTAC
AGGCCAGTTCAGTACATCCGTCTGTTTCAGTAATGGCCTCTGCCGCTGTA
TCTGATCAGGTACCTGTATCGGTCGATGCGGCCTCTACTCCTGTGGTACT
GCTGTTAGAAAATTCCGAAACTACTGCTGTACAATCTGAAATGGATGAAA
CTACTGCAGCTTTATCGCACACACTATCCCTCGAGCACAGGCTCGAGAGA
TCAAACACACCAATGCTTGACTCCGTGCTTAAAGTACTCCGTGAGCTCAG
CACCTCACCCGAGGCCTCGGGATCTTCTTGTCCATAGGCTCCACCCTCGG
GATCTTCTTGTCCATCTGAGGCTCCACCCTCGGGATCTTCTTGTCCATCT
GAGGCTCCACCCTCGGGATCTTCTTGTCCATCTGAGGCTCCACCTTCTGG
ATCTTCTTGTCCATCCGGGTCTCCACCTTCGGGATCTTCTTGTCCATCTG
AGGCTCCACCTTCGGGATCTTCTTGTCCATCCGGGTCTCCACCTTCGGGA
TCTTCTTGTCCATCTGAGGCTTCACCTCCGGGATCTTCTTGTCCATCTGA
GGCTCCACCTTCGGGATCTTCTTGTCCATCCGGGTCTTCGCCTCCGGGAT
GCGGAAAAAAATCGGTTGCGTCCACGAACCCCTCCCCAACAGCATTCATC
TCGGATGAGACTTCGACTCAGGATTCGGCTGCACTCTCGCGCCTTTCCCG
CACAGCTGTATTCTCGGAGGAGACTTCGGCGCTGAAAATTTTGGCTGCAC
CCCCGCGCCGTGCGACCACAGTTGTTATCTCTCGCGAGACTTCAACGCCG
TTGTCGGACACAACCTCTGGTCCCCAATACGGAATACATGAGGGGGTCCC
GTGGATCATGAAACCGTTATCTGATTTCACCGCCGGCGCACACTCGCACA
TGCACGCTGAGCGCGCCAGTGCGCCATCACCAGGCACCATTGTTGAACAT
GCTTCTTCACGCGTGGATATCACTGCTTCACCTTTAAGTCATTCAGTTGC
ATCGGGCAGCACCGCTGCGGCTCGCCCGCCCCCAGCCATGCCCATGCCAT
CAATCACTCGAACACAGAACGCATTACGGGACGCACGTCGGATTCGCCGG
TCAAATCAGTACACTTTGCCTACTGCTGCACGCACTGCTTTTGACAAAAT
GCCCCTTCCGACACCCACAACAACAACGCGTGCGCTCCCCTTGCGCGGCA
TACAGACAACACCGGCCCCGGACACCAATATGGCGGACACTTTGGCAACT
AGTCCATCAGGCACCGCGCCCGCCAGAATGGCCGTGGCAGCACCAGCTCC
TGCTACAGACTCCACGAGCATCGCCGATATCATGTACCCGTACAGTGATC
TTTCGCGCACACAGCAGGCAGCCTACTCGGAGGCGATGTGGTCGGGCTTC
CCCGACAGCATCAAGGCGGGCCTGTGCAACCCGGCCCATGCAGCCCGCTT
GCACCAAGCGGCCGAGTCCGATGGACAGCAGGCCCAGGCAGCGGCCAAGG
CCATCCTCGTGGAGGCTGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig784:57904..60074+

>mRNA_P-littoralis_Contig784.5.1 ID=mRNA_P-littoralis_Contig784.5.1|Name=mRNA_P-littoralis_Contig784.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig784:57904..60074+ (Pylaiella littoralis U1_48)
CAATCAAGAGAGAAACGACACATCAGTTCAGCTTGCGTTTGCAGTGATCA
CACCACGTTCGACACGAGAGAATCTCATCACATTTGGCGCCACGGCAAGC
AACGTCCACGACAACACCGGCCCCGGACACCAATATGGCGGACACTTTGG
CAACTAGTCCATCAGGCACCGCGCCCGCCAGAATGGCCGTGGCAGCACCA
GCTCCTGCTACAGACTCCACGAGCATCGCCGATATCATGTACCCGTACAG
TGATCTTTCGCGCACACAGCAGGCAGCCTACTCGGAGGCGATGTGGTCGG
GCTTCCCCGACAGCATCAAGGCGGGCCTGTGCAACCCGGCCCATGCAGCC
CGCTTGCACCAAGCGGCCGAGTCCGATGGACAGCAGGCCCAGGCAGCGGC
CAAGGCCATCCTCGTGGAGGCTGCCA
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