mRNA_P-littoralis_Contig783.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig783.41.1
Unique NamemRNA_P-littoralis_Contig783.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5JCV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.400e-16
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KRH  SIRR+TSVGQK P+G+EG AWA + KLR +L
Sbjct:  231 PDALGGMPANAKPEEALAFKVKFNSWYQRFRKRHGSSIRRRTSVGQKLPKGYEGMAWATVMKLREAL 297
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.470e-16
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AW  + KLR +L
Sbjct:  144 PDALGGMPANTKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWTTVMKLRETL 210
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.490e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+  FN WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L
Sbjct:  132 PDALGGMPANAKPEEALAFKVNFNPWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREAL 198
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5JYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.270e-15
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KL  +L
Sbjct:  116 PDALGGMPANAKPEEALAFKVKFNSWYQRFGKRNGFSIRRRNSVGQKLPKGYEGMAWATVMKLLEAL 182
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L
Sbjct:    9 PDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREAL 75
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.650e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L
Sbjct:  163 PDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREAL 229
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.650e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSV QK P+G+EG AWA + KLR +L
Sbjct:  220 PDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVAQKLPKGYEGMAWATVMKLREAL 286
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5KKK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.670e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L
Sbjct:  106 PDALGGMPANAKPEEALALKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGHEGMAWATVMKLRETL 172
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.080e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L
Sbjct:  191 PDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREAL 257
[Close]
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Match: A0A6H5L819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L819_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.370e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 PTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSL 204
            P   GG+P+  +PE+   F+ +FN+WY RF KR+ F IRR+TSVGQK P+G+EG AWA + KLR +L
Sbjct:  160 PDALGGVPANAKPEEALAFKVKFNSWYQRFRKRNGFRIRRRTSVGQKLPKGYEGMAWATVMKLREAL 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig783.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCV1_9PHAE3.400e-1656.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN68_9PHAE6.470e-1655.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KJN9_9PHAE8.490e-1656.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC3_9PHAE1.270e-1553.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE1.560e-1556.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE1.650e-1555.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRF0_9PHAE1.650e-1555.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKK4_9PHAE1.670e-1555.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ8_9PHAE3.080e-1555.22DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5L819_9PHAE3.370e-1553.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig783contigP-littoralis_Contig783:122410..122622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size213
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791610.328659-CDS-P-littoralis_Contig783:122409..1226221680791610.328659-CDS-P-littoralis_Contig783:122409..122622Pylaiella littoralis U1_48CDSP-littoralis_Contig783 122410..122622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig783.41.1prot_P-littoralis_Contig783.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig783 122410..122622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig783.41.1

>prot_P-littoralis_Contig783.41.1 ID=prot_P-littoralis_Contig783.41.1|Name=mRNA_P-littoralis_Contig783.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFFKRHRFSIRRKTSVGQKKP
EGWEGKAWAFIQKLRSSLREH
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mRNA from alignment at P-littoralis_Contig783:122410..122622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig783.41.1 ID=mRNA_P-littoralis_Contig783.41.1|Name=mRNA_P-littoralis_Contig783.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig783:122410..122622+ (Pylaiella littoralis U1_48)
ATGCCAACCTTTTCAGGGGGCATGCCGTCCCAAGACGAGCCGGAGAAGAT
GGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCTTCAAGA
GGCACCGGTTCTCGATCCGACGCAAGACAAGCGTGGGGCAGAAGAAGCCG
GAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCAAG
CCTGCGTGAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig783:122410..122622+

>mRNA_P-littoralis_Contig783.41.1 ID=mRNA_P-littoralis_Contig783.41.1|Name=mRNA_P-littoralis_Contig783.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig783:122410..122622+ (Pylaiella littoralis U1_48)
ATGCCAACCTTTTCAGGGGGCATGCCGTCCCAAGACGAGCCGGAGAAGAT
GGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCTTCAAGA
GGCACCGGTTCTCGATCCGACGCAAGACAAGCGTGGGGCAGAAGAAGCCG
GAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCAAG
CCTGCGTGAGCAC
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