mRNA_P-littoralis_Contig1197.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.25.1
Unique NamemRNA_P-littoralis_Contig1197.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1197.25.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.470e-31
Identity = 88/236 (37.29%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    1 MVARGVAAHDSYQKFLDLLSVRPASYATPAAPRKTTKTAGPDTLFGMTELRRLLASPVNLAALINGNPPLDRLSDLVAVLASPSPGVPQEVAMAPPLAAFQNRTATTPGKHGVPFLPSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPVTAPRTDVVDFLRDNRVCFTHAFKG-CTRTSCRWSHDVVAAGFYSALANRRNNTGNNAGRDTHRRLAAMTEEQYSLAVDIG 705
            M  RGV A   ++KF+ +LS R ASY TP  PRK  K AGPD LF M E R L A+    A   +  PP        A+  +P P  P    +AP +AA+QNRTAT PG HGVPF   +                                  PP +A RT+++D+LR + VC+ HAF G C R+ CRW+H +V    Y  +++R+      AGR  HR +A+ +  QYSL  + G
Sbjct:  249 MARRGVTAEKLFRKFVGVLSARNASYITPPPPRKHLKVAGPDRLFTMAEARSLFANSGTGAP--SALPPPVLTQPFSALAPAPVPAPP----VAPQVAAYQNRTATAPGGHGVPF---EARSSAHRPAPAPSAPAAGTASAPALTTSTPSDTRPPPSASRTEIIDYLRSHDVCYRHAFSGTCRRSPCRWNHALVPPALYKEVSSRQG-----AGRGKHR-VASPSPGQYSLMCEFG 469          
BLAST of mRNA_P-littoralis_Contig1197.25.1 vs. uniprot
Match: A0A6H5K725_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K725_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.150e-20
Identity = 95/259 (36.68%), Postives = 125/259 (48.26%), Query Frame = 1
Query:    1 MVARGVAAHDSYQKFLDLLSVRPASYATPAAPRKTTKTAGPDTLFG---------MTELRRLLASPVNLAALINGNPPLDRLSDLVAVLASPSPGVPQEVAMAPPLAA-----------FQNRTATTPGKHGVPFL---PSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPVTAPRTDVVDFLRDNRVCFTHAFKGCT-RTSCRWSHDVVAAGFYSALANRRNNTGNNAGRDTHRRLAAMTEEQYSLAVDIG 705
            M  RG  A   +++F+ +LSVR   Y TP  PR   +  G D L G         M E R+L  +   LA+  N   PL               G+    A+APP+AA           FQN  A+TPG+HGVPF    PS T XXXXXXXXXXXXXXXX                PPVTAPR+ ++D+L ++ +C+ H F  C  +  CRW HD++ A FY  +        +     T R +AA+T   Y  AV +G
Sbjct:   76 MSHRGTMAEGLFREFVAVLSVRSKQYMTPPTPRTPNRAGGQDRLCGANPTPHHMSMPEYRQLFTAD-GLASYNNSTLPLAASGXXXXXXXXXXTGLNSVAAVAPPVAAPETPSSVAVAAFQNHKASTPGQHGVPFTAKAPSSTAXXXXXXXXXXXXXXXXTH--------------PPVTAPRSVILDYLMEHGICYAHVFSACRGQGRCRWRHDLLPASFYKDVPR----PASRGPTHTRRVVAALTPAHYDTAVAMG 315          
BLAST of mRNA_P-littoralis_Contig1197.25.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.330e-19
Identity = 95/261 (36.40%), Postives = 128/261 (49.04%), Query Frame = 1
Query:    1 MVARGVAAHDSYQKFLDLLSVRPASYATPAAPRKTTKTAGPDTL---------FGMTELRRLLASP------VNLAALINGN-----PPLDRLSDLVAVLASP--SPGVPQEVAMAPPLAAFQNRTATTPGKHGVPFL---PSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPVTAPRTDVVDFLRDNRVCFTHAFKGCTRTS-CRWSHDVVAAGFYSALANRRNNTGNNAGRDTHRRLAAMTEEQYSLAVDIG 705
            M  RG  A   +++F+ +LS R   Y TP  PRK T+  G D L           M E R+L  +        ++   ++G      PP     + VA +A P  +P  P  VA+A    AFQN  A+TPG+HGVPF    PS T  XXXXXXXXXXXXXXX                PPVTAPR+ ++D L ++ +C+ H F  C R    RW HD++ + FY  +        + A   T R +AA+T   Y  AV +G
Sbjct:  203 MSHRGKVAESLFREFVAVLSARSKPYMTPTTPRKPTRAGGQDRLCAANPTPRHLSMPEYRQLFTADGLASYNSSIPLTVSGGSAPLRPPPPTWLNSVAAVAPPVAAPESPSSVAVA----AFQNHKASTPGQHGVPFTAKAPSSTAAXXXXXXXXXXXXXXXTH--------------PPVTAPRSVILDHLMEHGICYAHVFSACRRQGRFRWRHDLLPSSFYKDVPR----PASRAATHTRRVVAALTPAHYDTAVAMG 441          
BLAST of mRNA_P-littoralis_Contig1197.25.1 vs. uniprot
Match: A0A6H5JX43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX43_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.270e-8
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1
Query:  460 PPVTAPRTDVVDFLRDNRVCFTHAFKGCTRTS-CRWSHDVVAAGFYSALANRRNNTGNNAGRDTHRRLAAMTEEQYSLAVDIG 705
            PPVTAPR+ ++D L ++  C+ H F  C R   CRW HD++ A FY  +        ++    T R +AA+T   Y  AV +G
Sbjct:   87 PPVTAPRSVILDHLMEHGTCYAHVFSACRRQGRCRWRHDLLPASFYKDVPR----PASHGATHTRRVVAALTPAHYDTAVAMG 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J849_9PHAE2.470e-3137.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K725_9PHAE1.150e-2036.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8L9_9PHAE2.330e-1936.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX43_9PHAE1.270e-837.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:56105..56809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size705
Hectar predicted targeting categoryother localisation
Exons1
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.9117599-CDS-P-littoralis_Contig1197:56104..568091680789503.9117599-CDS-P-littoralis_Contig1197:56104..56809Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 56105..56809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.25.1prot_P-littoralis_Contig1197.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 56105..56809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.25.1

>prot_P-littoralis_Contig1197.25.1 ID=prot_P-littoralis_Contig1197.25.1|Name=mRNA_P-littoralis_Contig1197.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MVARGVAAHDSYQKFLDLLSVRPASYATPAAPRKTTKTAGPDTLFGMTEL
RRLLASPVNLAALINGNPPLDRLSDLVAVLASPSPGVPQEVAMAPPLAAF
QNRTATTPGKHGVPFLPSQTRTNTSPMPMSPPSPRSSPAQPSSVLPSTPP
SPPPPVTAPRTDVVDFLRDNRVCFTHAFKGCTRTSCRWSHDVVAAGFYSA
LANRRNNTGNNAGRDTHRRLAAMTEEQYSLAVDIG
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mRNA from alignment at P-littoralis_Contig1197:56105..56809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.25.1 ID=mRNA_P-littoralis_Contig1197.25.1|Name=mRNA_P-littoralis_Contig1197.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig1197:56105..56809- (Pylaiella littoralis U1_48)
ATGGTAGCCAGAGGTGTTGCGGCGCACGATTCGTACCAGAAGTTCCTCGA CCTTTTGTCCGTCCGCCCCGCCTCTTACGCCACCCCTGCAGCTCCTCGTA AAACCACGAAGACAGCAGGGCCAGACACATTGTTTGGCATGACGGAGTTG AGAAGGTTGCTTGCGTCACCCGTAAACCTCGCTGCACTCATAAATGGAAA CCCACCGCTCGACCGCCTGTCCGATCTTGTCGCCGTGCTAGCTTCGCCTT CGCCTGGCGTGCCTCAGGAAGTTGCCATGGCCCCACCCTTGGCTGCTTTC CAGAACCGCACCGCCACGACGCCAGGCAAACACGGCGTCCCGTTCCTGCC GTCGCAGACACGCACGAACACCTCACCCATGCCGATGTCACCTCCGTCGC CGCGCTCGTCGCCGGCCCAGCCGTCTTCGGTATTACCCTCGACCCCGCCG TCACCGCCACCACCGGTCACCGCTCCCAGAACGGACGTCGTGGATTTCCT GCGAGACAACCGTGTGTGCTTCACGCACGCCTTCAAAGGCTGCACACGGA CGTCCTGTCGGTGGTCTCACGACGTTGTTGCGGCTGGCTTCTACAGCGCT CTCGCCAACCGCCGCAACAACACTGGCAACAACGCCGGCCGCGACACACA CCGACGCCTGGCGGCGATGACCGAGGAGCAGTACAGCCTAGCGGTGGATA TTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1197:56105..56809-

>mRNA_P-littoralis_Contig1197.25.1 ID=mRNA_P-littoralis_Contig1197.25.1|Name=mRNA_P-littoralis_Contig1197.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig1197:56105..56809- (Pylaiella littoralis U1_48)
ATGGTAGCCAGAGGTGTTGCGGCGCACGATTCGTACCAGAAGTTCCTCGA
CCTTTTGTCCGTCCGCCCCGCCTCTTACGCCACCCCTGCAGCTCCTCGTA
AAACCACGAAGACAGCAGGGCCAGACACATTGTTTGGCATGACGGAGTTG
AGAAGGTTGCTTGCGTCACCCGTAAACCTCGCTGCACTCATAAATGGAAA
CCCACCGCTCGACCGCCTGTCCGATCTTGTCGCCGTGCTAGCTTCGCCTT
CGCCTGGCGTGCCTCAGGAAGTTGCCATGGCCCCACCCTTGGCTGCTTTC
CAGAACCGCACCGCCACGACGCCAGGCAAACACGGCGTCCCGTTCCTGCC
GTCGCAGACACGCACGAACACCTCACCCATGCCGATGTCACCTCCGTCGC
CGCGCTCGTCGCCGGCCCAGCCGTCTTCGGTATTACCCTCGACCCCGCCG
TCACCGCCACCACCGGTCACCGCTCCCAGAACGGACGTCGTGGATTTCCT
GCGAGACAACCGTGTGTGCTTCACGCACGCCTTCAAAGGCTGCACACGGA
CGTCCTGTCGGTGGTCTCACGACGTTGTTGCGGCTGGCTTCTACAGCGCT
CTCGCCAACCGCCGCAACAACACTGGCAACAACGCCGGCCGCGACACACA
CCGACGCCTGGCGGCGATGACCGAGGAGCAGTACAGCCTAGCGGTGGATA
TTGGC
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