mRNA_P-littoralis_Contig783.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5KZE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE8_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 7.310e-17 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 328 AHHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
AH+S++ V+ S+ + G+ NVW RLQQA +S++ +C SPPCC G HVHT+ G DLGEEMSHV+GA+VVRRP
Sbjct: 159 AHNSNSAVLREDRLHAKTSTVIFGTSNVWARLQQAATISSQQRCPSPPCCLGTHVHTYRGGDLGEEMSHVQGAVVVRRP 237
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5L1R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.700e-16 Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 367 LVGSDNVWNRLQQAV--SARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
+VG+ +VW+RLQQA+ S+R +C SPPCC GVH HT+ G DLGEEMSHV+GA+VVRRP
Sbjct: 177 IVGAFSVWSRLQQALDKSSRLRCPSPPCCLGVHTHTYRGGDLGEEMSHVQGAVVVRRP 234
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JTU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU1_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 6.920e-16 Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 196 GRASRTLRDATDTESSLPL--ELHGVGFTPIHLPPTTECLLPSNATA----HHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
G+ R L AT+ +S L E+ G +P+ P+N T H S+A V+ S+ + G+ +VW RL+QA S+R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct: 117 GQEHRKLDRATEGDSKLSFKPEISENGNSPLPHIYRAATTPPTNGTCPVTLHKSNAAVLREDRDNAGPSTVIAGALSVWERLRQASTASSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 245
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 9.440e-16 Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 1
Query: 196 GRASRTLRDATDTESSLPL-----ELHGVGFTPIHLPPTTECLLPSNATA----HHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRR 531
GR R L AT+ + L L E F I+ PT P+N + H+S++ +N S+ +VG+ VW RLQQA VS+R +C SPPCC G HVHT+ G DLGEEMSH++GA+VVRR
Sbjct: 117 GREHRKLDRATEGDPGLSLVPKMPEDGDNSFPQIYRAPTDP---PTNGSCPVAVHNSNSAALNEDRDSPEPSTAIVGAFPVWVRLQQAATVSSRLRCPSPPCCLGDHVHTYRGGDLGEEMSHIQGAVVVRR 244
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ5_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 7.860e-15 Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 292 PTTECLLPSNATAHHSSAVVVN--------SSDLVGSDNVWNRLQQAVSA--RDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
P T+ + P H+S+A V+ S+ + G+ +VW RL+QA +A R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct: 120 PPTKGMCP--VALHNSNAAVLREDRDNAAPSTVIAGALSVWKRLRQAATAPSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 208
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 8.120e-15 Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 367 LVGSDNVWNRLQQAV--SARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
+VG+ +VW+RLQQA+ S+R +C SPPCC GVH HT+ DLGEEMSHV+GA+VVRRP
Sbjct: 179 IVGAFSVWSRLQQALDESSRLRCPSPPCCLGVHTHTYREGDLGEEMSHVQGAVVVRRP 236
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ4_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.010e-14 Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 367 LVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
+VG+ VW RLQQA VS+R +C SPPCC G HVHT+ G DLGEEMSHV+G +VVRRP
Sbjct: 13 IVGAFPVWARLQQAATVSSRLRCPSPPCCLGDHVHTYRGGDLGEEMSHVRGTVVVRRP 70
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ6_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 331 HHSSAVVVN--------SSDLVGSDNVWNRLQQAVSA--RDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
H+S+A V+ S+ + G+ +VW RL+QA +A R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct: 7 HNSNAAVLREDRDNAAPSTVIAGALSVWKRLRQAATAPSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 84
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.790e-14 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 367 LVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
+VG+ +VW RLQ+A +S++ +C SPPCC G H+HT+ G DLGEEMSH++GA+VVRRP
Sbjct: 195 IVGAFSVWARLQEALNISSQLRCPSPPCCLGTHLHTYRGGDLGEEMSHIQGAVVVRRP 252
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 8.330e-9 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 367 LVGSDNVWNRLQQAVSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
LVG+D VW+ L +A + R QC PPC G H+H DLGEEMS +KGA+VVRRP
Sbjct: 690 LVGADAVWSILLEA-TPRAQCAHPPCSNGKHMHA-AWADLGEEMSRIKGAVVVRRP 743 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig783.1.1 >prot_P-littoralis_Contig783.1.1 ID=prot_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp MGLVQTSSVLATGARGRWVEPSGSLQHAEADEHHLHNQNQGPALRKGGRWback to top mRNA from alignment at P-littoralis_Contig783:6247..7032+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig783.1.1 ID=mRNA_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig783:6247..7032+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig783:6247..7032+ >mRNA_P-littoralis_Contig783.1.1 ID=mRNA_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig783:6247..7032+ (Pylaiella littoralis U1_48)back to top |