mRNA_P-littoralis_Contig783.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig783.1.1
Unique NamemRNA_P-littoralis_Contig783.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5KZE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.310e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  328 AHHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            AH+S++ V+         S+ + G+ NVW RLQQA  +S++ +C SPPCC G HVHT+ G DLGEEMSHV+GA+VVRRP
Sbjct:  159 AHNSNSAVLREDRLHAKTSTVIFGTSNVWARLQQAATISSQQRCPSPPCCLGTHVHTYRGGDLGEEMSHVQGAVVVRRP 237          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5L1R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  367 LVGSDNVWNRLQQAV--SARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            +VG+ +VW+RLQQA+  S+R +C SPPCC GVH HT+ G DLGEEMSHV+GA+VVRRP
Sbjct:  177 IVGAFSVWSRLQQALDKSSRLRCPSPPCCLGVHTHTYRGGDLGEEMSHVQGAVVVRRP 234          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JTU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.920e-16
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 GRASRTLRDATDTESSLPL--ELHGVGFTPIHLPPTTECLLPSNATA----HHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            G+  R L  AT+ +S L    E+   G +P+          P+N T     H S+A V+         S+ + G+ +VW RL+QA   S+R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct:  117 GQEHRKLDRATEGDSKLSFKPEISENGNSPLPHIYRAATTPPTNGTCPVTLHKSNAAVLREDRDNAGPSTVIAGALSVWERLRQASTASSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 245          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.440e-16
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  196 GRASRTLRDATDTESSLPL-----ELHGVGFTPIHLPPTTECLLPSNATA----HHSSAVVVN--------SSDLVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRR 531
            GR  R L  AT+ +  L L     E     F  I+  PT     P+N +     H+S++  +N        S+ +VG+  VW RLQQA  VS+R +C SPPCC G HVHT+ G DLGEEMSH++GA+VVRR
Sbjct:  117 GREHRKLDRATEGDPGLSLVPKMPEDGDNSFPQIYRAPTDP---PTNGSCPVAVHNSNSAALNEDRDSPEPSTAIVGAFPVWVRLQQAATVSSRLRCPSPPCCLGDHVHTYRGGDLGEEMSHIQGAVVVRR 244          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.860e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  292 PTTECLLPSNATAHHSSAVVVN--------SSDLVGSDNVWNRLQQAVSA--RDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            P T+ + P     H+S+A V+         S+ + G+ +VW RL+QA +A  R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct:  120 PPTKGMCP--VALHNSNAAVLREDRDNAAPSTVIAGALSVWKRLRQAATAPSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 208          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 8.120e-15
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  367 LVGSDNVWNRLQQAV--SARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            +VG+ +VW+RLQQA+  S+R +C SPPCC GVH HT+   DLGEEMSHV+GA+VVRRP
Sbjct:  179 IVGAFSVWSRLQQALDESSRLRCPSPPCCLGVHTHTYREGDLGEEMSHVQGAVVVRRP 236          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  367 LVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            +VG+  VW RLQQA  VS+R +C SPPCC G HVHT+ G DLGEEMSHV+G +VVRRP
Sbjct:   13 IVGAFPVWARLQQAATVSSRLRCPSPPCCLGDHVHTYRGGDLGEEMSHVRGTVVVRRP 70          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: D8LIQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  331 HHSSAVVVN--------SSDLVGSDNVWNRLQQAVSA--RDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            H+S+A V+         S+ + G+ +VW RL+QA +A  R +C SPPCC G+H HT+ G DLGEEMSH++GA+VVRRP
Sbjct:    7 HNSNAAVLREDRDNAAPSTVIAGALSVWKRLRQAATAPSRLRCPSPPCCLGMHAHTYQGGDLGEEMSHIQGAVVVRRP 84          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.790e-14
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  367 LVGSDNVWNRLQQA--VSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            +VG+ +VW RLQ+A  +S++ +C SPPCC G H+HT+ G DLGEEMSH++GA+VVRRP
Sbjct:  195 IVGAFSVWARLQEALNISSQLRCPSPPCCLGTHLHTYRGGDLGEEMSHIQGAVVVRRP 252          
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.330e-9
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  367 LVGSDNVWNRLQQAVSARDQCQSPPCCQGVHVHTHVGLDLGEEMSHVKGAIVVRRP 534
            LVG+D VW+ L +A + R QC  PPC  G H+H     DLGEEMS +KGA+VVRRP
Sbjct:  690 LVGADAVWSILLEA-TPRAQCAHPPCSNGKHMHA-AWADLGEEMSRIKGAVVVRRP 743          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KZE8_9PHAE7.310e-1754.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1R7_9PHAE3.700e-1667.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTU1_9PHAE6.920e-1641.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT9_9PHAE9.440e-1643.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIQ5_ECTSI7.860e-1547.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWK6_ECTSI8.120e-1565.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIQ4_ECTSI1.010e-1467.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIQ6_ECTSI1.200e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L311_9PHAE2.790e-1460.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA5_9PHAE8.330e-957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig783contigP-littoralis_Contig783:6247..7032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FWK6
PFAMsDUF563
Model size535
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.33e-15
EggNOG OGs2E14A@1|root,2S8GN@2759|Eukaryota
DescriptionProtein of unknown function (DUF563)
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.8756537-CDS-P-littoralis_Contig783:6246..66961680791609.8756537-CDS-P-littoralis_Contig783:6246..6696Pylaiella littoralis U1_48CDSP-littoralis_Contig783 6247..6696 +
1680791609.8899949-CDS-P-littoralis_Contig783:6948..70321680791609.8899949-CDS-P-littoralis_Contig783:6948..7032Pylaiella littoralis U1_48CDSP-littoralis_Contig783 6949..7032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig783.1.1prot_P-littoralis_Contig783.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig783 6247..7032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig783.1.1

>prot_P-littoralis_Contig783.1.1 ID=prot_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MGLVQTSSVLATGARGRWVEPSGSLQHAEADEHHLHNQNQGPALRKGGRW
HGQGRVQKLQWEEDKGRASRTLRDATDTESSLPLELHGVGFTPIHLPPTT
ECLLPSNATAHHSSAVVVNSSDLVGSDNVWNRLQQAVSARDQCQSPPCCQ
GVHVHTHVGLDLGEEMSHVKGAIVVRRP
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mRNA from alignment at P-littoralis_Contig783:6247..7032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig783.1.1 ID=mRNA_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=786bp|location=Sequence derived from alignment at P-littoralis_Contig783:6247..7032+ (Pylaiella littoralis U1_48)
ATGGGGCTAGTCCAGACTTCAAGTGTACTGGCAACAGGAGCTCGGGGAAG GTGGGTCGAACCATCAGGCAGTTTGCAGCACGCAGAGGCTGACGAGCATC ACCTACATAATCAGAACCAAGGACCCGCACTACGTAAAGGCGGGCGATGG CATGGGCAGGGTCGAGTCCAGAAGCTTCAGTGGGAGGAGGACAAGGGCCG CGCGTCAAGAACGTTGAGAGATGCCACAGATACGGAGAGCTCGTTGCCGT TGGAACTTCATGGCGTGGGCTTCACTCCAATCCATCTTCCTCCTACCACC GAATGCTTGCTACCATCGAATGCTACGGCTCATCATTCCAGCGCTGTGGT GGTAAATTCCTCAGATCTTGTCGGTTCCGACAACGTGTGGAACAGGTTGC AGCAAGCCGTATCCGCGCGAGATCAGTGCCAGAGCCCGCCCTGCTGTCAA GTATGTATTCCTACGTCTTTGTCGAATCAGAGTTCCCCCGTACGTCCACC AACTGCCCAATACGTTTCATACGTTCGTGAGGTCGTTGGTTGGACACAAC CCATTCAGAGGGCGCGCGTTCCAAATTCAAACCAGAAGCTGGACTTAGGC TGTCCTCTGGTGCGTCCCAAAATGGTACTTGACAAAATTTCCAATCCTCG TTCGACAAGGGTTTCCATAGCTGACGGTATATCTATTCTCGCGTGTCGTC AGGGTGTGCATGTTCATACACATGTTGGGCTGGATCTCGGAGAGGAGATG TCCCATGTCAAAGGAGCAATAGTGGTCCGGCGGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig783:6247..7032+

>mRNA_P-littoralis_Contig783.1.1 ID=mRNA_P-littoralis_Contig783.1.1|Name=mRNA_P-littoralis_Contig783.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig783:6247..7032+ (Pylaiella littoralis U1_48)
ATGGGGCTAGTCCAGACTTCAAGTGTACTGGCAACAGGAGCTCGGGGAAG
GTGGGTCGAACCATCAGGCAGTTTGCAGCACGCAGAGGCTGACGAGCATC
ACCTACATAATCAGAACCAAGGACCCGCACTACGTAAAGGCGGGCGATGG
CATGGGCAGGGTCGAGTCCAGAAGCTTCAGTGGGAGGAGGACAAGGGCCG
CGCGTCAAGAACGTTGAGAGATGCCACAGATACGGAGAGCTCGTTGCCGT
TGGAACTTCATGGCGTGGGCTTCACTCCAATCCATCTTCCTCCTACCACC
GAATGCTTGCTACCATCGAATGCTACGGCTCATCATTCCAGCGCTGTGGT
GGTAAATTCCTCAGATCTTGTCGGTTCCGACAACGTGTGGAACAGGTTGC
AGCAAGCCGTATCCGCGCGAGATCAGTGCCAGAGCCCGCCCTGCTGTCAA
GGTGTGCATGTTCATACACATGTTGGGCTGGATCTCGGAGAGGAGATGTC
CCATGTCAAAGGAGCAATAGTGGTCCGGCGGCCG
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