prot_P-littoralis_Contig1197.24.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1197.24.1
Unique Nameprot_P-littoralis_Contig1197.24.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length77
Homology
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BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.920e-15
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:   11 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMISDILALVHGLHGHAGVGATLTLVRDRFH 77
            SS  G +R    Y L   D IR+ D +GRKL AIP  M++DI+ALVH LHGHAGVGATL+L+RD FH
Sbjct:  796 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 860
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BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.960e-15
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:   11 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMISDILALVHGLHGHAGVGATLTLVRDRFH 77
            SS  G +R    Y L   D IR+ D +GRKL AIP  M++DI+ALVH LHGHAGVGATL+L+RD FH
Sbjct: 1318 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 1382
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFK7_9PHAE2.920e-1559.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE2.960e-1559.70RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 9..77
e-value: 1.6E-6
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:52783..53013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.24.1mRNA_P-littoralis_Contig1197.24.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1197 52783..53016 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1197.24.1 ID=prot_P-littoralis_Contig1197.24.1|Name=mRNA_P-littoralis_Contig1197.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MSDQQGVDPQSSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMIS
DILALVHGLHGHAGVGATLTLVRDRFH
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