mRNA_P-littoralis_Contig783.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig783.6.1
Unique NamemRNA_P-littoralis_Contig783.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig783.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig783contigP-littoralis_Contig783:17982..21596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons3
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.7301784-UTR-P-littoralis_Contig783:17981..180651680791609.7301784-UTR-P-littoralis_Contig783:17981..18065Pylaiella littoralis U1_48UTRP-littoralis_Contig783 17982..18065 +
1680791609.7801042-UTR-P-littoralis_Contig783:21492..215961680791609.7801042-UTR-P-littoralis_Contig783:21492..21596Pylaiella littoralis U1_48UTRP-littoralis_Contig783 21493..21596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.7440808-CDS-P-littoralis_Contig783:18065..181031680791609.7440808-CDS-P-littoralis_Contig783:18065..18103Pylaiella littoralis U1_48CDSP-littoralis_Contig783 18066..18103 +
1680791609.754693-CDS-P-littoralis_Contig783:21161..213231680791609.754693-CDS-P-littoralis_Contig783:21161..21323Pylaiella littoralis U1_48CDSP-littoralis_Contig783 21162..21323 +
1680791609.7694619-CDS-P-littoralis_Contig783:21341..214921680791609.7694619-CDS-P-littoralis_Contig783:21341..21492Pylaiella littoralis U1_48CDSP-littoralis_Contig783 21342..21492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig783.6.1prot_P-littoralis_Contig783.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig783 18066..21492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig783.6.1

>prot_P-littoralis_Contig783.6.1 ID=prot_P-littoralis_Contig783.6.1|Name=mRNA_P-littoralis_Contig783.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MLKNQGWLGKCKRQLGEISTLLRCVGLEKAGVPPAFRRGCLHDRPRFQVF
TPFRPSGYPFFGRQYSLSGKFPCGVLGVSFVVWLCFEVVSEPTDCLTSAL
LVLQLLSANTIKYEVK*
back to top

mRNA from alignment at P-littoralis_Contig783:17982..21596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig783.6.1 ID=mRNA_P-littoralis_Contig783.6.1|Name=mRNA_P-littoralis_Contig783.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3615bp|location=Sequence derived from alignment at P-littoralis_Contig783:17982..21596+ (Pylaiella littoralis U1_48)
CTATACATAACCGTCTGCGTGGAGAGGACAGCCGGCACGTGTCGCAATTA
CCAGTTACCATGTACCGGTCAAGGGTAGGGATGGATGCTCAAAAACCAGG
GCTGGCTAGGGAAATGCAAAAGGTAAGAACAAGCTTTCTTTGCAGGTATA
CCAACTAGAAGGACACACACCCGTGGCCAGGCTATGTGACGTATGGAATT
TTTGTACCGCTGTAGCCAGCTGCTGCTGTTTGCATCATCTACAGATCAGC
ACCCTTTGACCTGCAGCATATATTATGCGAGCGCTCGTGCACGCACAAAG
CTGTGGGCACCCACAGCTCTCTACAGCACGTACCGCGCGTCGCGATGTTC
GCAAGAGAGAGAGCAAGAGAGCAGTAGTCTAGTACTGGTCAGTCGTGGAG
CACAGGTCTCATCATCAGCATTGTGTGCGTTGTCTTTGTCTCCTCAGTAC
CTTCAAATATACGTACTCCTCCGATCATGGACGATTTCCGTGGCCACAGG
CTGCTTGCCCCAAAAGGGCCATGTAGTAGGCGGGAGATCCCATCAATCTG
CTAAAGGTACTGCAAAACACACATCGCTACAAAAATAGAAAACGAAAACG
GAGCCTGATCCAGGCAGAGTAAAAAAAAAAAAGTGCCACAATACACCGAA
TTCAGTTGCCAAAGGTGCCGGTAAAAATGAACATCGGGCTTGCAACTCTC
TTCACCGGCCCAGCGACAGTTTCAGGCAGCGCAAGCAAGCAGACGTGAAG
GGGCAAAAGGCAGAACGGCAGAAAACAGAAAACACGAAAGGAAAACTTCG
AAAGCAGTAACTCAGGCCACGGTAACCAACAGGGGGGGGCCGCACTGATG
AGGGGGGGGGGGGGGATAGAAAGGGCTAGTGCTATCACAGCAGTGTCAAT
CAATCTGGTGCATATGTCGTGCTACTTGTTTCCATCAATTCCCTCTTGCT
CTCCTCTGCCGCCGTCGTCTCATCCTTCCGGGTCTTTCTGCGCTTGCTTC
CTCGAGCTTCCCCCTCCCCTTTCTTCTCCTCCTCCGTTCTCTCCTTGGTC
GCGCTAAGTTCTCTCTCGGTTCGCTTTCCTGCACGTTTCCTGCTTGCCTC
CTTCTCCTCCTTGTGCCGGGTGGTCATAAACCGCGCAGCCCCTTCGCCAC
CCCCGCGTACCACGGCACACCCTTCTTCTCCTTCGCGGCCGTAGTCCACA
GGGCAGTGTCGATTCCGAACGTGAGGCGCCTGTCGTCCGTCGAACCGTCT
GTGGCTCCGAAAGCTTTGAAATCGTCCTCCCGCGATTTCAGCCAGTTTTG
CGCCGGCCGGCCTCTGCCTGGGTCCTCACCCCCCACGAGTTTCCCAAATA
TCAGTCGCTTCGGGAGCCGCCCATCGTCTTGGCTAGCCAGGCCTCCCGCG
AACAGAAATCGCCTTTGCCGGATGATGGCCTCAACACATTGGCTCCCGGT
CTTCTTGAGTGCTTTGGCGTATGACAGCTGTTGGTGGGTGCCTTGCACGC
AGCGGTATCCGATGACCCGCAGCAGGAGCCGGTGATGCGTTGTCCGCAGG
AACGTGTAGTAGTCGGCGCGTGGTGCCCAGGCCACACACCCATAGAGCAA
CGCCATCAACGCCTCCGCGTTCAGTAGTCGGACCTTGAGTCTCGACGGTG
CTGACTGCTGGTCGAAGAGGTCACGGGAGAACTTCTTGAGGCAGCCCCAC
GCGGCTCGGCTTCGGCGGTTGATCTCGCGCGTGAGCTCTCCATCTGCGCT
CACAAGGCCGCCCAAAAACCGAAACTCGCTCACTTGTGCGTACGTCTGAC
CCGCCGCTACGATGGAAAGTTTGGGCGGAGGAGAAGGTATAGGCTCCCCC
GGTTTTCGTGGTCTCTACGGCACTCGCATCAGCATCGTCTTCGTCTTTTT
CTCTGAAACGGTCACGCCAAAGGCCGCTAACACCTCCACAATGATAGTCA
TCATTTTGGCTAGGCCTTCGGGTGATCTCGAGACGAACCCTGCGTCGTCG
GCGTATGACATCCCTCATACCGCCCTCCGAATGTACTCTTGGGGGGTTTC
CGTCCTTCTGCCCTTCCCCTCTTCGTCCAAGCGCACCAAGTCCCTCATGA
TGACATTATCCTTGCTGAAGCGCTCCAGTATTACCTCGAGTGCCGCTGCA
AAGAAGATATTGAACAGCGGTAGTGACAGTACGCATCCTTGTCGCAGCCC
CTGGGTGACTTCGAATCAGTCCGAGAATGACCCGTCATCCATGCGGATTC
GGGCTAGCATGCCATCGTGAAACTGACGGATAACTGTGATCATCTCCGGT
ACGCCGGCTCGGGACCGTATCTTCCACGGCAGTTCTAGGTCGACCGAGCC
GTAGGCCTTCTAGAGGTCGACGAAGCACATGTACAGCGGTATTCTCCTTC
GCTGTCTCAGTCTCGGAGTCGGCGTATATACTACGAACAGCAAGTCGACG
GTAGATCGCTGGGGTCGGAAGCCGCTCTGTTCTATGGTAGTATCCCTTGG
GCTTTCGCAGTATTCGCTGAGGCGGTTGGCCACAATGTTCAGCATCACCT
TACCAGCGTGGGAGACAAGATAAAATCCCCCTGTAGTTTTTGCAGTTGGA
TCTATCGGCCTTCTTGTGGAGCACTTCGATGGGCGCATCTTTCCACTCCT
GCGGAATTCCCCCCCCGTTCCACACGCGGACAAGCATATCGTGGTAACGT
TGGATGACGATGGGTTTAGTATCTCCATCAAGGCCGTCAATCTTCAGTAG
CTCTACAAAGAGGGAATCGTCGCCCGGTGCCTTCCAGTTTTGCATTTCCC
AAGCTGCCCGTTTCCTCTCTGAAAGCGTTGGTGCTGAGCTGAGTCGGACC
TGATAATCATGTGTTGGTTCTGCTGCCGTTCTTTGACTCACCTCCTCAAT
GATGTCTGGTTGGGGTTTCGGAGATTTCGCGTTGAGCAGGCCGCTGAAGA
ACCTTATCCAGCGTTGCGCAATTCCACTTTGGCTCCTCAACAGAACACCA
TTCTCGTCCTGGATGAACTGCTGTCCCCCCGATGGCCTCCCATCAACCCC
CACAGATCCCTTGAGGTGTTTATACGGGCCTCTCATGTCACGCACTTTGT
ACAGCCTTTCCAGTTCCGCCACGTATCTCTCCAGGTGAGCATTGATTCCC
GCTTCTATCGCTTCTTGCACTCCCTTACAGGCAGCTTGGAGAGATTTCCA
CCTTGCTGAGGTGCGTTGGGCTTGAAAAAGCCGGCGTACCACCCGCTTTT
CGGCGGGGCTGTCTCCACGACCGCCCTCGCTTCCAGGTTTTCACGCCATT
CCGGCCATCGGGGTATCCGTTTTTCGGCCGGCAGTATAGTCTGTGCTGCT
TCGAGGATAGCTCCGGCAAGTTCCCTTGTGGCGTCCTGGGGGTTAGCTTC
GTGGTCTGGTTGTGCTTCGAGGTTGTGTCGGAACCTACCGATTGCTTGAC
GTCGGCATTGCTCGTCCTTCAATTGTTGTCGGCAAATACCATAAAATACG
AAGTAAAGTGAAGCGTGTTGTCGTGCGAAAGAGAAGCACAACACCACCCA
GCCAAACGACTGCTGTACGGTATTTTTGAAATGAAAGGCACTTTGTAGCT
GTGATACCTTCTAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig783:17982..21596+

>mRNA_P-littoralis_Contig783.6.1 ID=mRNA_P-littoralis_Contig783.6.1|Name=mRNA_P-littoralis_Contig783.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig783:17982..21596+ (Pylaiella littoralis U1_48)
ATGCTCAAAAACCAGGGCTGGCTAGGGAAATGCAAAAGGCAGCTTGGAGA
GATTTCCACCTTGCTGAGGTGCGTTGGGCTTGAAAAAGCCGGCGTACCAC
CCGCTTTTCGGCGGGGCTGTCTCCACGACCGCCCTCGCTTCCAGGTTTTC
ACGCCATTCCGGCCATCGGGGTATCCGTTTTTCGGCCGGCAGTATAGTCT
CTCCGGCAAGTTCCCTTGTGGCGTCCTGGGGGTTAGCTTCGTGGTCTGGT
TGTGCTTCGAGGTTGTGTCGGAACCTACCGATTGCTTGACGTCGGCATTG
CTCGTCCTTCAATTGTTGTCGGCAAATACCATAAAATACGAAGTAAAGTG
A
back to top