mRNA_P-littoralis_Contig783.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig783.4.1
Unique Name	mRNA_P-littoralis_Contig783.4.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.270e-10
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 3

Query:  231 RSCDVLYGRRGPCT*QFSTQIAS*IR----EGPLFDANMSIGI-CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSGCQESGE---LYARIEAGV 608
            R+C ++Y +      QF T+     +    + PL  A   I   C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G+   GG++ DW+ RL + L A  +  D+  G   + + +    Y ++E G 
Sbjct:    5 RTCMLMYTKLNGTHRQFLTRCIGWSKRKRSDRPLSHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGA 139

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.070e-9
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 3

Query:  309 EGPLFDANMSIGI-CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGS---GCQESGELYARIEAGV 608
            +GPLF A   I   C   + AT+RKRRLCFAGFV RM D+RL + + L  +  G+   GG++ DW+ RL + L A  +  ++  G      + S   Y ++E G 
Sbjct:   46 DGPLFYAQALIKAGCEETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGA 150

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5KZJ1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.280e-8
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 3

Query:  309 EGPLFDAN--MSIGICAIVLGATLRKRRLCFAGFVARMRDNRLQN-IALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSGCQESGE----LYARIEAGV 608
            E PL  A   M  G C   + AT+RKRRLCFAGFV RM DNRL   + LR +  G+   GG++ DW+ RL + L A  +  ++  G   QES +     Y ++E G 
Sbjct:  275 ERPLSYARALMQAG-CEETIKATVRKRRLCFAGFVMRMEDNRLPKCMLLRAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKESGKK-QESAKDPEVWYNKVEDGA 379

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5K0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.760e-8
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSGCQESGEL---YARIEAGV 608
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G+   GG++ DW+ RL + L A  +  ++  G   + + +L   Y ++E G 
Sbjct:  139 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDLEMWYNKVEDGT 229

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5K3Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-7
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSGCQESGEL-YARIEAGV 608
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G+   GG++ DW+ RL + L A  +  D G      +  E+ Y + E G 
Sbjct:  252 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGQDLVAFNMGDDGGKWKESAKDPEVSYNKFEDGA 340

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5JLC9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.470e-7
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSG 563
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G+   GG++ DW+ RL + L A    T R  G+G
Sbjct:  377 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFAWETKRKGGNG 449

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5L4N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.510e-7
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTA--LGIATDRGVGSGCQESGEL-YARIEAGV 608
            C   + AT+RKRRLCFAGFV RM D+RL + + L  + EG+   GG++ DW+  L + L A  +G   +RG      +  E+ Y ++E G 
Sbjct:   31 CEETIEATVRKRRLCFAGFVMRMEDSRLLKRMLLGAMAEGVGYWGGQESDWVSHLGEDLVAFNMGDEKERGKWKVSAKGPEVWYNKVEDGA 121

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BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-7
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVG---SGCQESGELYARIEAGV 608
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G    GG++ DW+ RL + L A G+  ++  G      ++    Y +IE G 
Sbjct:  161 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 251

[Close]

BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5KTP5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-7
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVGSG 563
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G+   GG++ DW+ RL + L A  +  ++  G G
Sbjct:  537 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQEIDWVSRLGEDLVAFNMGDEKEGGDG 609

[Close]

BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-7
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 3

Query:  348 CAIVLGATLRKRRLCFAGFVARMRDNRL-QNIALRRV*EGLEVLGGKQFDWLKRLQKYLTALGIATDRGVG---SGCQESGELYARIEAGV 608
            C   + AT+RKRRLCFAGFV RM DNRL + + L  +  G    GG++ DW+ RL + L A G+  ++  G      ++    Y +IE G 
Sbjct:  191 CEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 281

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig783.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JX67_9PHAE	9.270e-10	33.33	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JNV8_9PHAE	4.070e-9	38.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZJ1_9PHAE	4.280e-8	41.12	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K0S6_9PHAE	6.760e-8	38.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3Y0_9PHAE	1.420e-7	40.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLC9_9PHAE	1.470e-7	46.58	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L4N9_9PHAE	1.510e-7	39.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KSH7_9PHAE	1.550e-7	39.56	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTP5_9PHAE	1.600e-7	43.84	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KB07_9PHAE	1.680e-7	39.56	Reverse transcriptase domain-containing protein (F...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig783	contig	P-littoralis_Contig783:13807..14890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	610
Hectar predicted targeting category	other localisation
Exons	2
Cds size	414

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791609.65006-UTR-P-littoralis_Contig783:13806..13809	1680791609.65006-UTR-P-littoralis_Contig783:13806..13809	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig783 13807..13809 +
1680791609.692312-UTR-P-littoralis_Contig783:14697..14890	1680791609.692312-UTR-P-littoralis_Contig783:14697..14890	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig783 14698..14890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791609.6644657-CDS-P-littoralis_Contig783:13809..13837	1680791609.6644657-CDS-P-littoralis_Contig783:13809..13837	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig783 13810..13837 +
1680791609.6815827-CDS-P-littoralis_Contig783:14311..14697	1680791609.6815827-CDS-P-littoralis_Contig783:14311..14697	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig783 14312..14697 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig783.4.1	prot_P-littoralis_Contig783.4.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig783 13810..14697 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig783:13807..14890+
coding sequence from alignment at P-littoralis_Contig783:13807..14890+

protein sequence of mRNA_P-littoralis_Contig783.4.1

>prot_P-littoralis_Contig783.4.1 ID=prot_P-littoralis_Contig783.4.1|Name=mRNA_P-littoralis_Contig783.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MSMKLSISQETYWTRKAKPMPRTPLLLTWYHHEQWLLPPQRSGRSCAQTN
AICTTKPRWRPVCADGPCHSYVHIENARVTFCTEEGGRVPDNFRHKSPVR
LERALCLTRICLLGFARLFWEPLCASDGYALRGSSHA*

mRNA from alignment at P-littoralis_Contig783:13807..14890+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig783.4.1 ID=mRNA_P-littoralis_Contig783.4.1|Name=mRNA_P-littoralis_Contig783.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1084bp|location=Sequence derived from alignment at P-littoralis_Contig783:13807..14890+ (Pylaiella littoralis U1_48)
CAGATGTCCATGAAATTATCAATCTCGCAAGGTGAGCTTTATTCGCATCA
AAATAGTTTGTAAAACTGTTTAATCACGTGTGTAAGATTTGCTGGTAAAC
TTTCTCTTCTTCAACATTGCCGAAAGAACCTGGGGTAAGCACTCCGCGCT
ATCGGCTCATGTGGTCGTTTGGCAAGAAAACAATATCGATCGAGTCCTTG
TATCAATGCATCAGGCGCGTGCACCTCTCCCATTCAGGTGAAGATATTAC
GAAGAGCACGGCGAGGGGCGCTTGCGCCATTCTTTTTGCACGGCGGTGAA
TTTCGGAGGTTTCATCGCACACTATTTCCTGTGCACGCAATATTCTGTTG
AAGTCAATGCCACGACTACTTTGGCGGTGATGAAAAAACTAGGCCGCCGT
TTGTTGCTTCCCTAAATGATATTTCGAGTACACACTACGTAAGAGGTGCA
ATTTTTCGGATCTGACACCTCGACACTTCACCGAATCTAATGCCAACGTA
TGCAGAGACCTATTGGACGCGAAAAGCCAAGCCGATGCCGCGGACCCCCC
TACTGCTGACATGGTACCACCATGAACAGTGGCTTTTGCCGCCGCAGCGG
TCTGGACGATCTTGTGCCCAAACGAACGCCATCTGCACCACCAAGCCGAG
GTGGCGGCCTGTTTGCGCCGACGGCCCCTGCCACAGCTACGTCCACATTG
AAAACGCTCGTGTGACGTTTTGTACGGAAGAAGGGGGCCGTGTACCTGAC
AATTTTCGACACAAATCGCCAGTTAGATTAGAGAGGGCCCTTTGTTTGAC
GCGAATATGTCTATTGGGATTTGCGCGATTGTTCTGGGAGCCACTTTGCG
CAAGCGACGGCTATGCTTTGCGGGGTTCGTCGCACGCATGAGAGACAACA
GGCTTCAGAATATTGCTCTGCGGAGAGTTTGAGAGGGACTCGAGGTACTC
GGGGGAAAACAGTTTGATTGGCTGAAGCGACTACAGAAATACCTCACAGC
ATTGGGCATCGCCACCGACAGAGGGGTGGGAAGCGGGTGCCAAGAGAGCG
GAGAATTATACGCCAGGATCGAGGCGGGGGTGCA

Coding sequence (CDS) from alignment at P-littoralis_Contig783:13807..14890+

>mRNA_P-littoralis_Contig783.4.1 ID=mRNA_P-littoralis_Contig783.4.1|Name=mRNA_P-littoralis_Contig783.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig783:13807..14890+ (Pylaiella littoralis U1_48)
ATGTCCATGAAATTATCAATCTCGCAAGAGACCTATTGGACGCGAAAAGC
CAAGCCGATGCCGCGGACCCCCCTACTGCTGACATGGTACCACCATGAAC
AGTGGCTTTTGCCGCCGCAGCGGTCTGGACGATCTTGTGCCCAAACGAAC
GCCATCTGCACCACCAAGCCGAGGTGGCGGCCTGTTTGCGCCGACGGCCC
CTGCCACAGCTACGTCCACATTGAAAACGCTCGTGTGACGTTTTGTACGG
AAGAAGGGGGCCGTGTACCTGACAATTTTCGACACAAATCGCCAGTTAGA
TTAGAGAGGGCCCTTTGTTTGACGCGAATATGTCTATTGGGATTTGCGCG
ATTGTTCTGGGAGCCACTTTGCGCAAGCGACGGCTATGCTTTGCGGGGTT
CGTCGCACGCATGA