mRNA_P-littoralis_Contig1197.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.24.1
Unique NamemRNA_P-littoralis_Contig1197.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.160e-15
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   34 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMISDILALVHGLHGHAGVGATLTLVRDRFH 234
            SS  G +R    Y L   D IR+ D +GRKL AIP  M++DI+ALVH LHGHAGVGATL+L+RD FH
Sbjct:  796 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 860
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BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.210e-15
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   34 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMISDILALVHGLHGHAGVGATLTLVRDRFH 234
            SS  G +R    Y L   D IR+ D +GRKL AIP  M++DI+ALVH LHGHAGVGATL+L+RD FH
Sbjct: 1318 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 1382
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFK7_9PHAE4.160e-1559.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE4.210e-1559.70RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:52783..53016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size235
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.8677168-CDS-P-littoralis_Contig1197:52782..530131680789503.8677168-CDS-P-littoralis_Contig1197:52782..53013Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 52783..53013 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.8809614-UTR-P-littoralis_Contig1197:53013..530161680789503.8809614-UTR-P-littoralis_Contig1197:53013..53016Pylaiella littoralis U1_48UTRP-littoralis_Contig1197 53014..53016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.24.1prot_P-littoralis_Contig1197.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 52783..53013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.24.1

>prot_P-littoralis_Contig1197.24.1 ID=prot_P-littoralis_Contig1197.24.1|Name=mRNA_P-littoralis_Contig1197.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MSDQQGVDPQSSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQTMIS
DILALVHGLHGHAGVGATLTLVRDRFH
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mRNA from alignment at P-littoralis_Contig1197:52783..53016-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.24.1 ID=mRNA_P-littoralis_Contig1197.24.1|Name=mRNA_P-littoralis_Contig1197.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig1197:52783..53016- (Pylaiella littoralis U1_48)
AGTATGTCAGACCAGCAAGGGGTAGACCCACAGAGTAGCCCATCTGGTGA
CCAGAGAGTTGCAAAGAATTACATCCTAGACGATCACGACACCATCCGCT
TTCTTGACACCCGAGGCAGGAAATTAATTGCCATTCCTCAAACCATGATA
TCTGATATTCTAGCGCTAGTTCACGGCTTACACGGGCACGCAGGAGTAGG
GGCTACACTCACTCTTGTTCGCGACCGTTTCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1197:52783..53016-

>mRNA_P-littoralis_Contig1197.24.1 ID=mRNA_P-littoralis_Contig1197.24.1|Name=mRNA_P-littoralis_Contig1197.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1197:52783..53016- (Pylaiella littoralis U1_48)
ATGTCAGACCAGCAAGGGGTAGACCCACAGAGTAGCCCATCTGGTGACCA
GAGAGTTGCAAAGAATTACATCCTAGACGATCACGACACCATCCGCTTTC
TTGACACCCGAGGCAGGAAATTAATTGCCATTCCTCAAACCATGATATCT
GATATTCTAGCGCTAGTTCACGGCTTACACGGGCACGCAGGAGTAGGGGC
TACACTCACTCTTGTTCGCGACCGTTTCCAC
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