mRNA_P-littoralis_Contig782.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig782.21.1
Unique NamemRNA_P-littoralis_Contig782.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig782.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig782contigP-littoralis_Contig782:69832..72483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size818
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.1841636-UTR-P-littoralis_Contig782:69831..699391680791609.1841636-UTR-P-littoralis_Contig782:69831..69939Pylaiella littoralis U1_48UTRP-littoralis_Contig782 69832..69939 -
1680791609.2193935-UTR-P-littoralis_Contig782:72331..724831680791609.2193935-UTR-P-littoralis_Contig782:72331..72483Pylaiella littoralis U1_48UTRP-littoralis_Contig782 72332..72483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791609.196632-CDS-P-littoralis_Contig782:69939..702551680791609.196632-CDS-P-littoralis_Contig782:69939..70255Pylaiella littoralis U1_48CDSP-littoralis_Contig782 69940..70255 -
1680791609.2088537-CDS-P-littoralis_Contig782:72089..723311680791609.2088537-CDS-P-littoralis_Contig782:72089..72331Pylaiella littoralis U1_48CDSP-littoralis_Contig782 72090..72331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig782.21.1prot_P-littoralis_Contig782.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig782 69940..72331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig782.21.1

>prot_P-littoralis_Contig782.21.1 ID=prot_P-littoralis_Contig782.21.1|Name=mRNA_P-littoralis_Contig782.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
MTTYIHTHTQTDTHSLSTQFFFVTVSSRFIIGSTSCRRPVVYRRRFTSCT
RASYKAPPASFTPRQHTSTQKQDRLGHFDEWYTSCEKKVHARSEIDQALP
RSSLLSTSVLGCETGYWTAQSLCASWIVPSFHLWCRLPPAREHGAGDMAF
GNANSNVDPDKEDIFRAISSPASQGRHGDTILDNI*
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mRNA from alignment at P-littoralis_Contig782:69832..72483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig782.21.1 ID=mRNA_P-littoralis_Contig782.21.1|Name=mRNA_P-littoralis_Contig782.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2652bp|location=Sequence derived from alignment at P-littoralis_Contig782:69832..72483- (Pylaiella littoralis U1_48)
CTCTCGCATGCAGGGCTTCCCCCTGTCTGTCAGCATCAAGACTTGGTGCA
CAGAGCCCACGATACGTCGAATGACTGCTGACTTCCCCCTGTGTGACCCC
GGTTGGAGCGTCTACCTACCCGAAAGGTGTAGAGTCGCGTCCAATCAAAG
GGATGACAACATACATACACACACATACACAAACAGACACACACAGTCTA
AGTACTCAGTTTTTTTTCGTCACCGTTTCATCCCGGTTTATTATCGGTTC
AACATCATGCCGCAGGCCGGTGGTGTATCGCCGGCGGTTCACAAGCTGCA
CACGAGCCAGCTACAAGGCCCCCCCTGCTTCGTTCACACCCCGACAACAC
ACCTCTACACAGAAGCAAGATCGACTTGGTCATTTTGACGAGTGGTGAGA
AGTGCTGCCCCCCATTGCTATGTAAAACCAATTAGTAATTCTTCCGTAAA
TCCTCCGTAAGTCCATTCCAAAACATACATGCCCACACCACTCGATCGAG
TAGCACAGCAAAGTACCATGTTCTATTATACATAGGTTCCGTTTCGCCTG
TCGCGACTGTTGCATCATCATTTGCAGCGGAATAGAACACAAATGGTGAT
CAAGTGCGCGACGTTGTTACAGCACAACATATGTGTTGATTATATTTTGA
TTAGTGGTCCCCTCGTTAAGCACTATATGCAGAGGAACGGGGGTTCGATT
CCCGGTGAGTGTGTTCCTTTGCTACTTTGAAAGCGGCTACAAGTATGCTG
TTTGTAAAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACGGCTGACCC
CTGCTCGCGAGAAAAAATCTCGCGCATGTACCGCAGAAGGAAGGTGGGGG
TAACTCCTCCTGTGTTGACCTTCCTCCTGTGTTACCCCGTCGATGGGCCT
AGCCTGTAGTTTCAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGG
GATGACAACACACATATATGTGACCCGCTTCATCAACAAGCCGACACGAC
GATACGCGGAGCTGTTGATGCTGCTGCTGTTAAAGCTTGACTTATCTTCA
AACAACAACAAACACAGAGCGAACAGGATGCGCATAAAACGTCGGAGATT
CCTGTAAAAAGAAAAAAGAAAATTCCGCACGAAAAACGAAGAGCTCGTTG
CATTTGAAGTCACTTGTATCGCTGCTTCGGAAGGAAAAGCCCGCCCTCAT
GAAACAAATCATATGTGTTGTCGTCCCTTTAATCGGACGCCACACTACAC
CTTTCGTCGGGCCGGTCGCCCCGGTGGACTAGTGGTTCCCTCGTTAACCA
CTAGATGCAGAGGAACGGGGGTGCGATTCCCGGTGAAGGTGTTTCTTTGC
TCTTTTGAAAGCGGCTATGCTGTTAGTAAAAGAAGATTCGGCTTCGCCGA
CGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAAATCTCACGCATG
TACCGCAGAAGGAAGGTGAAGGTAACTCCTCCTGTGTTGAGCTTCCTCCT
GTGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAAGGTGCAG
ACTAGTGTGCCAGAGAATATGGGATGACTACCCACACACACCTTTCGGGT
AGGTAGACGCTCCAACCGAAATCACACAGGGGGAAGTCAACACAGGAGTT
TTTTTTTTTTTCTCTACTTCCCTCTGCGGTGCTTGCCTTTTTGGTTGAGC
TTTTATCGCGAGAAAGGGGACAGCAATCCCTTTCGCTCGTCGATGGTACG
ATCGAATTTTGTCTACTCACGAATTGATCGCTTTCCACTTTCACGCGCAA
TGTGAGAAAACGCCCCAGATCGTGTTACTGTACTGCACTGGGATTCGGTC
TCACGCGTGAATGTCAGAAGGCTGCGTGGATTACCAACTGAACCCCCGGG
GGAACCGGTCAAAGATATGGCAACCGGAGAAGACACAAAAAGAAGAAACA
CCAAAACATACACGTGTATCAGATGTTGTCCAGGATTGTATCTCCATGCC
GCCCTTGCGACGCTGGTGATGATATCGCCCTAAATATGTCCTCCTTGTCT
GGGTCCATGTTGTTGTTGGGGTTGCCGAAGACCATATCACCAGCACCATG
CTCTCGTAACGCTTCTTCACTGCCGGCGTTACCTTAGGTCACCTCCATAA
CCGCCGCTCTCTCACATAACAGCTTTCTTGTTGTCCCTCTCCAATCCGTT
CCCTAAAAAACTCCGCTGTGCACTTGAGGTACACGTCTTGTGAAAAAAAA
GTTCACGCTCGGAGTGAGATCGACCAAGCTCTTCCCCGTTCGTCGCTGCT
GTCTACCTCCGTCCTTGGCTGCGAAACTGGCTACTGGACGGCACAATCCC
TCTGTGCATCCTGGATCGTACCGTCTTTTCACCTGTGGTGTCGCCTGCCT
CCGGCACGAGAGCATGGTGCTGGTGATATGGCCTTCGGCAATGCCAACAG
CAACGTGGACCCAGACAAGGAGGACATCTTCAGGGCGATATCATCACCAG
CGTCGCAAGGACGGCATGGAGATACCATCCTCGACAACATCTGATATACG
TGTATGTTTTTGTGTTTCTTCTTTTTCTGTCTTCTCCGATTGCCGGGGCT
ACTTGTACGTTGCAGGCAGCACTCCAGACAGCAACTAACTGCTGTAGTCT
GC
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Coding sequence (CDS) from alignment at P-littoralis_Contig782:69832..72483-

>mRNA_P-littoralis_Contig782.21.1 ID=mRNA_P-littoralis_Contig782.21.1|Name=mRNA_P-littoralis_Contig782.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig782:69832..72483- (Pylaiella littoralis U1_48)
ATGACAACATACATACACACACATACACAAACAGACACACACAGTCTAAG
TACTCAGTTTTTTTTCGTCACCGTTTCATCCCGGTTTATTATCGGTTCAA
CATCATGCCGCAGGCCGGTGGTGTATCGCCGGCGGTTCACAAGCTGCACA
CGAGCCAGCTACAAGGCCCCCCCTGCTTCGTTCACACCCCGACAACACAC
CTCTACACAGAAGCAAGATCGACTTGGTCATTTTGACGAGTGGTACACGT
CTTGTGAAAAAAAAGTTCACGCTCGGAGTGAGATCGACCAAGCTCTTCCC
CGTTCGTCGCTGCTGTCTACCTCCGTCCTTGGCTGCGAAACTGGCTACTG
GACGGCACAATCCCTCTGTGCATCCTGGATCGTACCGTCTTTTCACCTGT
GGTGTCGCCTGCCTCCGGCACGAGAGCATGGTGCTGGTGATATGGCCTTC
GGCAATGCCAACAGCAACGTGGACCCAGACAAGGAGGACATCTTCAGGGC
GATATCATCACCAGCGTCGCAAGGACGGCATGGAGATACCATCCTCGACA
ACATCTGA
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