mRNA_P-littoralis_Contig780.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig780.14.1
Unique NamemRNA_P-littoralis_Contig780.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig780.14.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.760e-9
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSE 231
            +F  Q  SL  QE C  A+ + + I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E
Sbjct:  377 VFTSQFRSLLEQERCLGAIESKKTIRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTE 453
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BLAST of mRNA_P-littoralis_Contig780.14.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-6
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSE 231
            +F  Q  SL  QE C  A+ +   I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E
Sbjct:   73 VFTSQFRSLLKQERCLGAIESKNTIRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTE 149
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BLAST of mRNA_P-littoralis_Contig780.14.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.190e-5
Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:    1 MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSE 231
            +F  Q   L+  ++C +A+ +   I+VG  +     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E
Sbjct:  136 VFESQFRMLWQLDDCLNAIVSEETIRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTE 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig780.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LNE2_9PHAE6.760e-936.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE1.020e-633.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE1.190e-532.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig780contigP-littoralis_Contig780:126091..126321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791608.6892262-CDS-P-littoralis_Contig780:126090..1263211680791608.6892262-CDS-P-littoralis_Contig780:126090..126321Pylaiella littoralis U1_48CDSP-littoralis_Contig780 126091..126321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig780.14.1prot_P-littoralis_Contig780.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig780 126091..126321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig780.14.1

>prot_P-littoralis_Contig780.14.1 ID=prot_P-littoralis_Contig780.14.1|Name=mRNA_P-littoralis_Contig780.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQ
RAWSIILEKVTVPSLVEQLQALGSPSE
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mRNA from alignment at P-littoralis_Contig780:126091..126321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig780.14.1 ID=mRNA_P-littoralis_Contig780.14.1|Name=mRNA_P-littoralis_Contig780.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig780:126091..126321+ (Pylaiella littoralis U1_48)
ATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGTGCGATGA
CGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAAAAATTTAAGAC
CAGCAGACTTGCACGTGATTTTTGGTGTACCAGCAGTAGAGAAGGCACAG
AGAGCGTGGAGTATTATACTGGAGAAGGTCACTGTTCCATCTCTTGTCGA
GCAGCTGCAGGCACTAGGTAGTCCGAGTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig780:126091..126321+

>mRNA_P-littoralis_Contig780.14.1 ID=mRNA_P-littoralis_Contig780.14.1|Name=mRNA_P-littoralis_Contig780.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig780:126091..126321+ (Pylaiella littoralis U1_48)
ATGTTCAGAGGACAGATGGATTCTTTGTTTGTGCAGGAAGAGTGCGATGA
CGCACTGAGAAACACTCGCCCCATCAAGGTGGGCGACAAAAATTTAAGAC
CAGCAGACTTGCACGTGATTTTTGGTGTACCAGCAGTAGAGAAGGCACAG
AGAGCGTGGAGTATTATACTGGAGAAGGTCACTGTTCCATCTCTTGTCGA
GCAGCTGCAGGCACTAGGTAGTCCGAGTGAA
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