mRNA_P-littoralis_Contig1197.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1197.21.1
Unique NamemRNA_P-littoralis_Contig1197.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1197.21.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.080e-7
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   16 QDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFS 222
            +D+YA+   + P+P  QS+ D   AL+ AA+      G   L A TRAL  LH  GV++LSLFEVLVF+
Sbjct:  773 EDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKVVGGQSKLTA-TRALDALHRDGVRVLSLFEVLVFT 840
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1197.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE9.080e-746.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1197contigP-littoralis_Contig1197:36885..37108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size224
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789503.7778416-CDS-P-littoralis_Contig1197:36884..371061680789503.7778416-CDS-P-littoralis_Contig1197:36884..37106Pylaiella littoralis U1_48CDSP-littoralis_Contig1197 36885..37106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1197.21.1prot_P-littoralis_Contig1197.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1197 36885..37106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1197.21.1

>prot_P-littoralis_Contig1197.21.1 ID=prot_P-littoralis_Contig1197.21.1|Name=mRNA_P-littoralis_Contig1197.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
DRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAA
TRALTVLHGSGVKILSLFEVLVFS
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mRNA from alignment at P-littoralis_Contig1197:36885..37108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1197.21.1 ID=mRNA_P-littoralis_Contig1197.21.1|Name=mRNA_P-littoralis_Contig1197.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=224bp|location=Sequence derived from alignment at P-littoralis_Contig1197:36885..37108+ (Pylaiella littoralis U1_48)
GACAGGGTGAGCTCTCAAGACGTGTACGCCCTCAAGCACTTTTCTTTGCC
TCAGCCATCTCCTCAAAGCCAAGCAGACGAGCACAATGCTCTCTACATGG
CGGCTAGAATACAAGGGGGAGAAGCGGGCCCGGAAACCCTACGGGCGGCT
ACGAGGGCCTTGACGGTCTTGCATGGAAGCGGCGTGAAGATACTGTCATT
GTTCGAGGTGCTCGTATTCAGCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1197:36885..37108+

>mRNA_P-littoralis_Contig1197.21.1 ID=mRNA_P-littoralis_Contig1197.21.1|Name=mRNA_P-littoralis_Contig1197.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1197:36885..37108+ (Pylaiella littoralis U1_48)
GACAGGGTGAGCTCTCAAGACGTGTACGCCCTCAAGCACTTTTCTTTGCC
TCAGCCATCTCCTCAAAGCCAAGCAGACGAGCACAATGCTCTCTACATGG
CGGCTAGAATACAAGGGGGAGAAGCGGGCCCGGAAACCCTACGGGCGGCT
ACGAGGGCCTTGACGGTCTTGCATGGAAGCGGCGTGAAGATACTGTCATT
GTTCGAGGTGCTCGTATTCAGC
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