prot_P-littoralis_Contig78.77.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig78.77.2
Unique Nameprot_P-littoralis_Contig78.77.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length218
Homology
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 3.560e-79
Identity = 134/169 (79.29%), Postives = 140/169 (82.84%), Query Frame = 0
Query:   51 EVEAPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVEGRGRMDYST-DSK-SGGSSSSFIANSDGGKIPPPAGXXXXXXXXXXVTKLALDKKVALLKLKLREAQQQSGTR 217
            EV  PPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYH VGPR GEPRGFCFVEYSN +DAAKAIRALHGRKLYGRPLRVRFMTVEG+GRMDYST DSK S  +S SF    DG KIPP  G          VTKL+LDKKVALLKLKLREAQ+ +G R
Sbjct:  113 EVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR 281          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A169WBX9_DAUCS (RRM domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WBX9_DAUCS)

HSP 1 Score: 100 bits (250), Expect = 4.800e-23
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0
Query:   53 EAPPDVEGIPNET-LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMT----VEGRGRMDYSTDSKSGG 161
            + P ++ G   E+ L++GNL +R++EA +IK+F+PFG +V E F +H  GP+RGEPRG+ FV+Y   E+A  A   +HG+ +YGRPL VR  +    V+G G  D + D+K  G
Sbjct:   31 QEPNNIMGDKYESRLYIGNLDFRITEAALIKMFSPFGTIVSEDFLWHTRGPKRGEPRGYAFVQYRTVEEAKLAKEKVHGKLVYGRPLVVRLASEKDLVDGAGSSDKAIDAKKPG 144          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: UPI001FB14565 (probable RNA-binding protein 18 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14565)

HSP 1 Score: 98.6 bits (244), Expect = 2.360e-22
Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 0
Query:   66 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVEGRGRMDYSTDSKSGGSSSSFIANSDGGKI 175
            L++GNL Y++SEA +IK+F+PFGK+V E F  H  GP+RGEPRGF F+++SN E+A  A   ++GR + GRPL VR  + + +  M +++ +  G  + S +  S  G++
Sbjct:   15 LYIGNLDYKISEATLIKMFSPFGKIVAEDFLLHTRGPKRGEPRGFAFIQFSNREEAKLAKVKMNGRLVCGRPLIVRLESEKHQAEMTHNSGAVFGCENGSGLGGSSSGQV 124          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A176VG38_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VG38_MARPO)

HSP 1 Score: 98.6 bits (244), Expect = 3.440e-22
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 0
Query:   57 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFM 143
            D EG+  E     L++GNL +RV+E  +IKLF+PFGK+  E++ +H  GP+RGEPRGF FVEYS  EDA +A  +++GR  +GRPL VRF+
Sbjct:    9 DKEGLGGEKREHKLYIGNLDHRVTEYHVIKLFSPFGKIRCEEYMWHTHGPKRGEPRGFAFVEYSKREDAERAKASMNGRLAFGRPLVVRFV 99          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A2G5E0G3_AQUCA (RRM domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5E0G3_AQUCA)

HSP 1 Score: 97.8 bits (242), Expect = 3.600e-22
Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 0
Query:   58 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVEGRGRMDYSTDSKSG-GSSSSFIANSDG 172
            V+   +  L++GNL  R++EAV+IK+F+PFGK+V E F +H  GP+RGEPRGF F++++  E+A  A   +HG+   GRPL VRF   +     + +     G G+ SSF+ NS G
Sbjct:    7 VDDKSDRRLYIGNLDQRITEAVLIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQFNTKEEAELAKEKMHGKFACGRPLVVRFACEKYLVESEANPSKTIGEGNKSSFVGNSSG 122          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A565CPV0_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CPV0_9BRAS)

HSP 1 Score: 97.4 bits (241), Expect = 5.060e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0
Query:   56 PDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRF 142
            PD  G  +E     L+VGNL  R++EA ++K+F+P+GK++ E F +H  GP++GEPRG+ FV+YS  E+A  A+  +HGR   GRPL VRF
Sbjct:    2 PDTGGFVDEKNESRLYVGNLDLRINEAALLKMFSPYGKIISEDFLWHTRGPKKGEPRGYAFVQYSRKEEAEVAVEKMHGRLACGRPLVVRF 92          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A803MKS2_CHEQI (RRM domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MKS2_CHEQI)

HSP 1 Score: 97.4 bits (241), Expect = 6.730e-22
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 0
Query:   57 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRF 142
            D+ G+ NET    ++VGN+ +R+SEA ++K+F+PFGK+  E F  H  GP+RGEPRGF FV+YS  E+A  A   +HGR   GRPL VR 
Sbjct:   12 DLNGMSNETSDRRIYVGNIDHRISEATLLKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVRL 101          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: A0A2G5DIJ7_AQUCA (RRM domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DIJ7_AQUCA)

HSP 1 Score: 97.8 bits (242), Expect = 1.030e-21
Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 0
Query:   58 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVEGRGRMDYSTDSKSG-GSSSSFIANSDG 172
            V+   +  L++GNL  R++EAV+IK+F+PFGK+V E F +H  GP+RGEPRGF F++++  E+A  A   +HG+   GRPL VRF   +     + +     G G+ SSF+ NS G
Sbjct:   56 VDDKSDRRLYIGNLDQRITEAVLIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQFNTKEEAELAKEKMHGKFACGRPLVVRFACEKYLVESEANPSKTIGEGNKSSFVGNSSG 171          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: UPI000B8CF78D (probable RNA-binding protein 18 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF78D)

HSP 1 Score: 95.1 bits (235), Expect = 3.540e-21
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 0
Query:   66 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVE--GRGRMDYSTDSKSGGSSSSFIANSDGGKIPPPAGXXXXXXXXXXVTKLALDKKVALLKLKLREAQQQSGT 216
            L+VGNL  RV+EA +IK+F+P+GK+V E F +H  GP+RGEPRGF F++YS  E+A  A   +HGR   GRPL VR  + +   +   D S  +    + +S + +S G                    +++   K+A +K KL+  +++SG+
Sbjct:   15 LYVGNLDLRVTEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGRLACGRPLVVRIASEKYLEQAAQDPSKATTGDTNKTSLVGSSSG--------------------QMSRSAKIAAIKSKLKSLEEESGS 147          
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Match: UPI000CECE4CA (probable RNA-binding protein 18 isoform X1 n=2 Tax=Morus notabilis TaxID=981085 RepID=UPI000CECE4CA)

HSP 1 Score: 95.1 bits (235), Expect = 3.730e-21
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0
Query:   66 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMVGPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRF 142
            L++GNL  R++EA +IK+F+PFGK+V E F +H  GP+RGEPRGF FV+YS  E+A  A   +HGR   GRPL VR 
Sbjct:   15 LYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVRL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.77.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT06_ECTSI3.560e-7979.29RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A169WBX9_DAUCS4.800e-2343.86RRM domain-containing protein n=3 Tax=Daucus carot... [more]
UPI001FB145652.360e-2242.73probable RNA-binding protein 18 n=1 Tax=Impatiens ... [more]
A0A176VG38_MARPO3.440e-2252.75RRM domain-containing protein n=2 Tax=Marchantia p... [more]
A0A2G5E0G3_AQUCA3.600e-2243.10RRM domain-containing protein n=2 Tax=Thalictroide... [more]
A0A565CPV0_9BRAS5.060e-2248.35RRM domain-containing protein n=1 Tax=Arabis nemor... [more]
A0A803MKS2_CHEQI6.730e-2251.11RRM domain-containing protein n=4 Tax=Chenopodium ... [more]
A0A2G5DIJ7_AQUCA1.030e-2143.10RRM domain-containing protein n=1 Tax=Aquilegia co... [more]
UPI000B8CF78D3.540e-2135.95probable RNA-binding protein 18 n=1 Tax=Carica pap... [more]
UPI000CECE4CA3.730e-2155.84probable RNA-binding protein 18 isoform X1 n=2 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 65..162
NoneNo IPR availablePANTHERPTHR21245HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINcoord: 65..162
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 65..141
e-value: 3.3E-5
score: 33.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 65..141
e-value: 3.8E-23
score: 92.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 66..139
e-value: 8.6E-17
score: 60.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 64..145
score: 17.676954
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..152
e-value: 5.5E-25
score: 90.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 56..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:345674..348998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.77.2mRNA_P-littoralis_Contig78.77.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig78 345623..351034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig78.77.2 ID=prot_P-littoralis_Contig78.77.2|Name=mRNA_P-littoralis_Contig78.77.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MATTSGPSEKLEDDRDSSTGSTPTAASKSGAGGGAGEGAAAVAGGAAAGV
EVEAPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHMV
GPRRGEPRGFCFVEYSNCEDAAKAIRALHGRKLYGRPLRVRFMTVEGRGR
MDYSTDSKSGGSSSSFIANSDGGKIPPPAGAGADAGAGAGVTKLALDKKV
ALLKLKLREAQQQSGTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf